Wall clock time and date at job start Wed Apr 1 2020 05:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99904 * 2 1 4 4 C 1.52998 * 109.46838 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47071 * 67.97877 * 4 3 2 6 6 C 1.46898 * 110.99909 * 282.19288 * 5 4 3 7 7 C 1.50702 * 109.46977 * 164.77610 * 6 5 4 8 8 C 1.38627 * 119.75533 * 90.00008 * 7 6 5 9 9 C 1.37614 * 120.25123 * 180.27914 * 8 7 6 10 10 C 1.40716 * 119.74291 * 359.51554 * 9 8 7 11 11 C 1.41401 * 120.24376 * 180.23199 * 10 9 8 12 12 H 1.07998 * 120.00369 * 207.90847 * 11 10 9 13 13 C 1.39953 * 119.99911 * 27.91350 * 11 10 9 14 14 N 1.30819 * 119.99810 * 12.85335 * 13 11 10 15 15 Si 1.86791 * 119.99845 * 192.85826 * 13 11 10 16 16 H 1.48501 * 109.47412 * 89.99944 * 15 13 11 17 17 H 1.48499 * 109.47191 * 209.99601 * 15 13 11 18 18 H 1.48502 * 109.47379 * 329.99941 * 15 13 11 19 19 C 1.40707 * 119.51355 * 0.48047 * 10 9 8 20 20 C 1.37620 * 119.74506 * 359.75289 * 19 10 9 21 21 C 1.46907 * 110.99781 * 158.24059 * 5 4 3 22 22 C 1.52998 * 109.47425 * 287.36370 * 21 5 4 23 23 H 1.09003 * 109.47075 * 57.64656 * 22 21 5 24 24 O 1.42904 * 109.46879 * 297.65003 * 22 21 5 25 25 C 1.52993 * 109.47598 * 177.64901 * 22 21 5 26 26 F 1.39903 * 109.47151 * 59.99642 * 25 22 21 27 27 F 1.39890 * 109.47514 * 179.97438 * 25 22 21 28 28 F 1.39902 * 109.46964 * 300.00249 * 25 22 21 29 29 H 1.09005 * 109.47160 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47536 * 300.00048 * 1 2 3 31 31 H 1.08995 * 109.47614 * 60.00375 * 1 2 3 32 32 H 1.09000 * 109.47329 * 59.99872 * 3 2 1 33 33 H 1.09002 * 109.46737 * 300.00045 * 3 2 1 34 34 H 1.08994 * 109.47511 * 307.97534 * 4 3 2 35 35 H 1.08999 * 109.46578 * 187.97691 * 4 3 2 36 36 H 1.08999 * 109.47159 * 44.77310 * 6 5 4 37 37 H 1.09004 * 109.47026 * 284.77173 * 6 5 4 38 38 H 1.08000 * 119.87433 * 359.97438 * 8 7 6 39 39 H 1.08001 * 120.12966 * 179.72103 * 9 8 7 40 40 H 0.97007 * 120.00143 * 180.02562 * 14 13 11 41 41 H 1.08000 * 120.13318 * 179.72771 * 19 10 9 42 42 H 1.07998 * 119.88011 * 180.02562 * 20 19 10 43 43 H 1.08996 * 109.47174 * 47.36326 * 21 5 4 44 44 H 1.08995 * 109.46878 * 167.36021 * 21 5 4 45 45 H 0.96698 * 114.00314 * 300.00071 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9830 0.6280 -1.2830 6 6 3.7700 -0.8246 -1.3298 7 6 3.8804 -1.3029 -2.7547 8 6 5.1114 -1.6992 -3.2539 9 6 5.2250 -2.1322 -4.5552 10 6 4.0836 -2.1814 -5.3767 11 6 4.1873 -2.6292 -6.7139 12 1 3.4924 -2.2707 -7.4590 13 6 5.1903 -3.5371 -7.0720 14 7 5.8676 -4.1630 -6.1442 15 14 5.5620 -3.8551 -8.8748 16 1 6.6022 -2.9035 -9.3411 17 1 6.0538 -5.2464 -9.0409 18 1 4.3254 -3.6682 -9.6756 19 6 2.8392 -1.7767 -4.8594 20 6 2.7500 -1.3426 -3.5565 21 6 5.3903 0.9623 -1.5396 22 6 5.5059 2.4466 -1.8922 23 1 5.0970 3.0462 -1.0788 24 8 4.7751 2.7096 -3.0917 25 6 6.9777 2.8080 -2.1020 26 9 7.5025 2.0385 -3.1459 27 9 7.0833 4.1650 -2.4249 28 9 7.6931 2.5505 -0.9277 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8474 0.5258 0.8109 35 1 3.9778 2.1705 0.1433 36 1 2.7780 -1.0590 -0.9437 37 1 4.5242 -1.3223 -0.7201 38 1 5.9856 -1.6633 -2.6207 39 1 6.1858 -2.4362 -4.9435 40 1 6.5631 -4.7921 -6.3924 41 1 1.9575 -1.8062 -5.4824 42 1 1.7960 -1.0319 -3.1570 43 1 5.9817 0.7535 -0.6482 44 1 5.7608 0.3617 -2.3703 45 1 5.0851 2.2091 -3.8589 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594017713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:56 Heat of formation + Delta-G solvation = -224.939662 kcal Electronic energy + Delta-G solvation = -32017.324299 eV Core-core repulsion = 27198.740817 eV Total energy + Delta-G solvation = -4818.583482 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.16617 -47.68579 -47.63882 -39.03464 -37.62516 -37.35401 -35.77239 -33.64010 -30.88388 -30.87032 -29.26300 -28.86171 -26.82951 -26.17365 -24.86842 -23.09822 -22.52222 -21.11983 -20.69711 -19.79664 -18.65436 -18.52321 -18.25087 -17.25285 -16.55263 -16.39883 -15.90224 -15.61025 -15.29105 -14.90534 -14.72789 -14.49151 -14.33561 -14.15846 -14.07914 -14.07335 -13.79928 -13.78779 -13.71788 -13.41049 -13.22467 -12.93854 -12.35889 -12.10755 -11.93773 -11.82440 -11.60840 -11.52256 -11.41589 -11.25668 -11.13600 -10.93295 -10.90542 -10.42384 -10.29360 -10.24627 -9.63995 -9.41427 -9.32305 -9.13807 -8.05405 -7.40943 -7.21540 -6.69267 -4.32929 2.56661 2.77179 3.08507 3.11106 3.12776 3.18797 3.56448 3.72451 3.80415 3.92232 3.96513 4.27551 4.42881 4.69369 4.75773 4.89105 5.03734 5.22547 5.27508 5.38731 5.41668 5.49975 5.55344 5.67947 5.73923 5.77900 5.89962 5.95459 6.10800 6.37151 6.46674 6.60958 6.96340 7.10787 7.13686 7.23970 7.33522 7.36945 7.42210 7.45101 7.66150 7.92301 8.09596 8.18222 8.35002 8.68008 8.94118 9.01205 10.25262 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.008589 B = 0.003958 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3259.378952 B = 7072.246618 C = 9518.800841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.069 3.931 4 C 0.050 3.950 5 N -0.512 5.512 6 C 0.111 3.889 7 C -0.199 4.199 8 C -0.103 4.103 9 C -0.159 4.159 10 C 0.112 3.888 11 C -0.465 4.465 12 H 0.075 0.925 13 C 0.075 3.925 14 N -0.801 5.801 15 Si 0.908 3.092 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.263 1.263 19 C -0.224 4.224 20 C -0.066 4.066 21 C 0.013 3.987 22 C 0.082 3.918 23 H 0.132 0.868 24 O -0.517 6.517 25 C 0.416 3.584 26 F -0.178 7.178 27 F -0.180 7.180 28 F -0.184 7.184 29 H 0.083 0.917 30 H 0.034 0.966 31 H 0.041 0.959 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.021 0.979 38 H 0.081 0.919 39 H 0.116 0.884 40 H 0.279 0.721 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.049 0.951 44 H 0.107 0.893 45 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.821 11.202 11.589 16.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.008 4.008 4 C -0.079 4.079 5 N -0.236 5.236 6 C -0.014 4.014 7 C -0.200 4.200 8 C -0.122 4.122 9 C -0.178 4.178 10 C 0.109 3.891 11 C -0.495 4.495 12 H 0.094 0.906 13 C -0.142 4.142 14 N -0.427 5.427 15 Si 0.733 3.267 16 H -0.194 1.194 17 H -0.204 1.204 18 H -0.187 1.187 19 C -0.244 4.244 20 C -0.085 4.085 21 C -0.116 4.116 22 C 0.020 3.980 23 H 0.149 0.851 24 O -0.322 6.322 25 C 0.361 3.639 26 F -0.159 7.159 27 F -0.161 7.161 28 F -0.166 7.166 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.039 0.961 38 H 0.099 0.901 39 H 0.134 0.866 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.067 0.933 44 H 0.125 0.875 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -2.118 11.457 11.631 16.463 hybrid contribution 1.222 -0.673 -0.532 1.493 sum -0.896 10.784 11.100 15.501 Atomic orbital electron populations 1.22698 0.81595 1.02596 0.99564 1.87906 1.19261 1.27746 1.95202 1.22535 0.93235 0.85001 1.00052 1.22219 0.94240 0.99793 0.91608 1.62000 1.16530 1.14889 1.30158 1.21103 1.01593 0.83660 0.95045 1.18892 0.94128 1.12096 0.94910 1.20540 0.94967 1.00821 0.95854 1.21288 0.99095 1.04008 0.93443 1.17612 0.90379 0.88126 0.92942 1.19590 1.12401 1.22547 0.94952 0.90638 1.25868 0.94555 0.94370 0.99370 1.69803 1.18280 1.20064 1.34588 0.86320 0.79637 0.78036 0.82739 1.19385 1.20404 1.18710 1.21015 0.96666 1.11407 0.95306 1.20311 0.96027 0.98347 0.93792 1.22855 0.91852 0.93788 1.03119 1.23117 0.83816 0.99341 0.91764 0.85058 1.86637 1.58013 1.69071 1.18529 1.21883 0.92874 0.74928 0.74244 1.93223 1.88729 1.75192 1.58777 1.93189 1.96920 1.33337 1.92697 1.93171 1.81168 1.93833 1.48409 0.89842 0.94698 0.93987 0.93608 0.92036 0.93847 0.90342 0.88262 0.96108 0.90127 0.86611 0.91063 0.89252 0.89485 0.93313 0.87461 0.75964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -5.01 7.91 -35.23 -0.28 -5.29 16 3 C 0.07 0.78 6.25 37.16 0.23 1.01 16 4 C 0.05 0.58 5.36 -3.83 -0.02 0.56 16 5 N -0.51 -7.42 4.23 -236.08 -1.00 -8.42 16 6 C 0.11 1.90 4.91 -4.98 -0.02 1.88 16 7 C -0.20 -4.10 5.10 -104.33 -0.53 -4.63 16 8 C -0.10 -2.28 8.03 -39.67 -0.32 -2.60 16 9 C -0.16 -4.00 8.67 -38.87 -0.34 -4.34 16 10 C 0.11 2.92 5.55 -106.83 -0.59 2.33 16 11 C -0.46 -12.26 9.06 -37.74 -0.34 -12.60 16 12 H 0.08 1.93 7.88 -52.49 -0.41 1.52 16 13 C 0.07 1.88 5.22 -17.34 -0.09 1.79 16 14 N -0.80 -20.74 10.90 55.55 0.61 -20.13 16 15 Si 0.91 18.79 29.58 -169.99 -5.03 13.76 16 16 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 17 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 19 C -0.22 -5.41 9.80 -38.88 -0.38 -5.80 16 20 C -0.07 -1.44 9.67 -39.66 -0.38 -1.83 16 21 C 0.01 0.17 4.20 -3.82 -0.02 0.15 16 22 C 0.08 0.98 3.01 -26.74 -0.08 0.90 16 23 H 0.13 1.32 6.52 -51.93 -0.34 0.98 16 24 O -0.52 -7.05 13.19 -35.23 -0.46 -7.51 16 25 C 0.42 5.15 2.85 37.15 0.11 5.25 16 26 F -0.18 -2.49 16.46 2.25 0.04 -2.45 16 27 F -0.18 -2.31 17.26 2.25 0.04 -2.27 16 28 F -0.18 -2.25 16.76 2.25 0.04 -2.21 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.51 7.97 -51.93 -0.41 0.09 16 35 H 0.08 0.74 6.24 -51.93 -0.32 0.42 16 36 H 0.10 1.72 5.06 -51.93 -0.26 1.46 16 37 H 0.02 0.35 8.00 -51.93 -0.42 -0.06 16 38 H 0.08 1.64 7.55 -52.49 -0.40 1.24 16 39 H 0.12 3.06 6.24 -52.49 -0.33 2.74 16 40 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 41 H 0.09 2.07 8.06 -52.49 -0.42 1.64 16 42 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 43 H 0.05 0.61 7.64 -51.93 -0.40 0.21 16 44 H 0.11 1.70 5.01 -51.93 -0.26 1.44 16 45 H 0.39 5.03 8.69 45.56 0.40 5.43 16 LS Contribution 378.20 15.07 5.70 5.70 Total: -1.00 -28.11 378.20 -7.27 -35.38 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -5.25 Total: 9.92 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -1.67 Total: -16.48 kcal Atomic # 7 Polarization: -28.16 SS G_CDS: -0.39 Total: -28.55 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.74 Total: -12.80 kcal Atomic # 9 Polarization: -7.05 SS G_CDS: 0.11 Total: -6.93 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -28.11 -7.27 -35.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594017713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.564 kcal (2) G-P(sol) polarization free energy of solvation -28.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds