Wall clock time and date at job start Wed Apr 1 2020 05:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99904 * 2 1 4 4 C 1.52998 * 109.46838 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47071 * 67.97877 * 4 3 2 6 6 C 1.46898 * 110.99909 * 282.19288 * 5 4 3 7 7 C 1.50702 * 109.46977 * 164.77610 * 6 5 4 8 8 C 1.38627 * 119.75533 * 90.00008 * 7 6 5 9 9 C 1.37614 * 120.25123 * 180.27914 * 8 7 6 10 10 C 1.40716 * 119.74291 * 359.51554 * 9 8 7 11 11 C 1.41401 * 120.24376 * 180.23199 * 10 9 8 12 12 H 1.07998 * 120.00369 * 207.90847 * 11 10 9 13 13 C 1.39953 * 119.99911 * 27.91350 * 11 10 9 14 14 N 1.30819 * 119.99810 * 12.85335 * 13 11 10 15 15 Si 1.86791 * 119.99845 * 192.85826 * 13 11 10 16 16 H 1.48501 * 109.47412 * 89.99944 * 15 13 11 17 17 H 1.48499 * 109.47191 * 209.99601 * 15 13 11 18 18 H 1.48502 * 109.47379 * 329.99941 * 15 13 11 19 19 C 1.40707 * 119.51355 * 0.48047 * 10 9 8 20 20 C 1.37620 * 119.74506 * 359.75289 * 19 10 9 21 21 C 1.46907 * 110.99781 * 158.24059 * 5 4 3 22 22 C 1.52998 * 109.47425 * 287.36370 * 21 5 4 23 23 H 1.09003 * 109.47075 * 57.64656 * 22 21 5 24 24 O 1.42904 * 109.46879 * 297.65003 * 22 21 5 25 25 C 1.52993 * 109.47598 * 177.64901 * 22 21 5 26 26 F 1.39903 * 109.47151 * 59.99642 * 25 22 21 27 27 F 1.39890 * 109.47514 * 179.97438 * 25 22 21 28 28 F 1.39902 * 109.46964 * 300.00249 * 25 22 21 29 29 H 1.09005 * 109.47160 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47536 * 300.00048 * 1 2 3 31 31 H 1.08995 * 109.47614 * 60.00375 * 1 2 3 32 32 H 1.09000 * 109.47329 * 59.99872 * 3 2 1 33 33 H 1.09002 * 109.46737 * 300.00045 * 3 2 1 34 34 H 1.08994 * 109.47511 * 307.97534 * 4 3 2 35 35 H 1.08999 * 109.46578 * 187.97691 * 4 3 2 36 36 H 1.08999 * 109.47159 * 44.77310 * 6 5 4 37 37 H 1.09004 * 109.47026 * 284.77173 * 6 5 4 38 38 H 1.08000 * 119.87433 * 359.97438 * 8 7 6 39 39 H 1.08001 * 120.12966 * 179.72103 * 9 8 7 40 40 H 0.97007 * 120.00143 * 180.02562 * 14 13 11 41 41 H 1.08000 * 120.13318 * 179.72771 * 19 10 9 42 42 H 1.07998 * 119.88011 * 180.02562 * 20 19 10 43 43 H 1.08996 * 109.47174 * 47.36326 * 21 5 4 44 44 H 1.08995 * 109.46878 * 167.36021 * 21 5 4 45 45 H 0.96698 * 114.00314 * 300.00071 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9830 0.6280 -1.2830 6 6 3.7700 -0.8246 -1.3298 7 6 3.8804 -1.3029 -2.7547 8 6 5.1114 -1.6992 -3.2539 9 6 5.2250 -2.1322 -4.5552 10 6 4.0836 -2.1814 -5.3767 11 6 4.1873 -2.6292 -6.7139 12 1 3.4924 -2.2707 -7.4590 13 6 5.1903 -3.5371 -7.0720 14 7 5.8676 -4.1630 -6.1442 15 14 5.5620 -3.8551 -8.8748 16 1 6.6022 -2.9035 -9.3411 17 1 6.0538 -5.2464 -9.0409 18 1 4.3254 -3.6682 -9.6756 19 6 2.8392 -1.7767 -4.8594 20 6 2.7500 -1.3426 -3.5565 21 6 5.3903 0.9623 -1.5396 22 6 5.5059 2.4466 -1.8922 23 1 5.0970 3.0462 -1.0788 24 8 4.7751 2.7096 -3.0917 25 6 6.9777 2.8080 -2.1020 26 9 7.5025 2.0385 -3.1459 27 9 7.0833 4.1650 -2.4249 28 9 7.6931 2.5505 -0.9277 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8474 0.5258 0.8109 35 1 3.9778 2.1705 0.1433 36 1 2.7780 -1.0590 -0.9437 37 1 4.5242 -1.3223 -0.7201 38 1 5.9856 -1.6633 -2.6207 39 1 6.1858 -2.4362 -4.9435 40 1 6.5631 -4.7921 -6.3924 41 1 1.9575 -1.8062 -5.4824 42 1 1.7960 -1.0319 -3.1570 43 1 5.9817 0.7535 -0.6482 44 1 5.7608 0.3617 -2.3703 45 1 5.0851 2.2091 -3.8589 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594017713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:55 Heat of formation + Delta-G solvation = -242.739005 kcal Electronic energy + Delta-G solvation = -32018.096137 eV Core-core repulsion = 27198.740817 eV Total energy + Delta-G solvation = -4819.355319 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -51.18251 -48.69975 -48.66715 -40.25472 -39.01368 -38.49868 -36.96156 -35.43047 -32.47978 -31.87719 -31.07646 -30.14669 -28.25248 -27.05302 -26.25921 -24.45228 -23.56058 -22.76044 -22.04847 -21.38488 -19.67624 -19.56550 -19.27443 -19.15398 -17.49679 -17.41487 -17.08113 -16.92856 -16.58835 -16.09825 -15.88577 -15.63124 -15.50804 -15.38267 -15.33401 -15.18501 -15.09906 -14.99793 -14.81606 -14.76933 -14.43288 -14.22996 -13.86426 -13.61896 -13.43133 -13.03870 -12.94429 -12.79681 -12.68109 -12.58182 -12.36306 -12.27478 -12.22063 -12.12677 -11.78516 -11.37030 -11.23505 -11.13387 -10.98665 -10.39849 -9.31395 -9.17792 -9.04349 -8.55768 -6.29354 0.99168 1.22587 1.39016 1.50342 1.51783 1.61035 2.23411 2.50417 2.72606 2.79475 2.90758 2.99582 3.27775 3.44960 3.69840 3.85157 3.91500 4.13525 4.31757 4.41903 4.43467 4.46546 4.52781 4.60118 4.65728 4.67359 4.69616 4.74315 4.84404 4.94114 5.04065 5.09840 5.21153 5.25366 5.46789 5.54529 5.78145 6.02782 6.04765 6.16859 6.22953 6.35387 6.36767 6.44339 6.47762 6.77534 7.01423 7.10850 8.40811 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.008589 B = 0.003958 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3259.378952 B = 7072.246618 C = 9518.800841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.408 6.408 3 C 0.067 3.933 4 C 0.048 3.952 5 N -0.520 5.520 6 C 0.120 3.880 7 C -0.179 4.179 8 C -0.100 4.100 9 C -0.179 4.179 10 C 0.080 3.920 11 C -0.504 4.504 12 H 0.070 0.930 13 C 0.035 3.965 14 N -0.835 5.835 15 Si 0.979 3.021 16 H -0.263 1.263 17 H -0.270 1.270 18 H -0.260 1.260 19 C -0.237 4.237 20 C -0.068 4.068 21 C 0.014 3.986 22 C 0.091 3.909 23 H 0.159 0.841 24 O -0.528 6.528 25 C 0.420 3.580 26 F -0.190 7.190 27 F -0.182 7.182 28 F -0.181 7.181 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.024 0.976 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.284 0.716 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.181 12.487 13.256 18.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.328 6.328 3 C -0.009 4.009 4 C -0.080 4.080 5 N -0.244 5.244 6 C -0.006 4.006 7 C -0.181 4.181 8 C -0.119 4.119 9 C -0.199 4.199 10 C 0.078 3.922 11 C -0.534 4.534 12 H 0.089 0.911 13 C -0.179 4.179 14 N -0.462 5.462 15 Si 0.800 3.200 16 H -0.188 1.188 17 H -0.194 1.194 18 H -0.184 1.184 19 C -0.257 4.257 20 C -0.087 4.087 21 C -0.115 4.115 22 C 0.029 3.971 23 H 0.176 0.824 24 O -0.334 6.334 25 C 0.365 3.635 26 F -0.172 7.172 27 F -0.163 7.163 28 F -0.162 7.162 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.042 0.958 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.125 0.875 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.487 12.759 13.316 18.609 hybrid contribution 1.282 -0.977 -0.851 1.823 sum -1.205 11.781 12.465 17.194 Atomic orbital electron populations 1.22810 0.80381 1.03105 1.00452 1.87839 1.20703 1.28887 1.95384 1.22618 0.92881 0.84545 1.00868 1.22383 0.94671 1.01019 0.89888 1.61841 1.17167 1.12890 1.32499 1.20945 1.01971 0.85591 0.92087 1.19297 0.92909 1.09297 0.96601 1.20711 0.96364 0.99882 0.94904 1.21211 0.98127 1.05690 0.94867 1.17907 0.91386 0.89369 0.93566 1.19805 1.13957 1.24253 0.95391 0.91143 1.26659 0.93865 0.93566 1.03767 1.69867 1.18958 1.20757 1.36615 0.85248 0.79419 0.78208 0.77088 1.18817 1.19422 1.18378 1.21176 0.96173 1.11848 0.96502 1.20542 0.97357 0.97753 0.93006 1.22807 0.91515 0.94400 1.02791 1.23175 0.83418 0.98680 0.91821 0.82404 1.86619 1.58475 1.69223 1.19103 1.21918 0.93027 0.74648 0.73955 1.93205 1.88955 1.75553 1.59486 1.93187 1.96934 1.33450 1.92728 1.93178 1.81173 1.93795 1.48092 0.89636 0.92687 0.94186 0.90850 0.93099 0.93380 0.87626 0.88010 0.95797 0.88408 0.88663 0.90518 0.89131 0.87485 0.91733 0.90090 0.75937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.41 -9.65 7.91 -148.98 -1.18 -10.83 16 3 C 0.07 1.31 6.25 71.98 0.45 1.76 16 4 C 0.05 0.94 5.36 86.30 0.46 1.40 16 5 N -0.52 -13.75 4.23 -900.81 -3.81 -17.56 16 6 C 0.12 3.86 4.91 85.56 0.42 4.28 16 7 C -0.18 -7.28 5.10 -19.67 -0.10 -7.38 16 8 C -0.10 -4.45 8.03 22.22 0.18 -4.27 16 9 C -0.18 -9.37 8.67 22.73 0.20 -9.17 16 10 C 0.08 4.34 5.55 -21.29 -0.12 4.22 16 11 C -0.50 -27.72 9.06 23.46 0.21 -27.50 16 12 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 13 C 0.03 1.79 5.22 85.26 0.44 2.23 16 14 N -0.83 -44.69 10.90 21.83 0.24 -44.45 16 15 Si 0.98 39.35 29.58 68.60 2.03 41.37 16 16 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 17 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 18 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 19 C -0.24 -11.73 9.80 22.73 0.22 -11.51 16 20 C -0.07 -2.94 9.67 22.22 0.21 -2.73 16 21 C 0.01 0.34 4.20 86.30 0.36 0.70 16 22 C 0.09 1.97 3.01 30.59 0.09 2.06 16 23 H 0.16 2.56 6.52 -2.39 -0.02 2.54 16 24 O -0.53 -13.62 13.19 -148.98 -1.96 -15.59 16 25 C 0.42 9.66 2.85 71.98 0.21 9.87 16 26 F -0.19 -5.22 16.46 44.97 0.74 -4.48 16 27 F -0.18 -4.35 17.26 44.97 0.78 -3.57 16 28 F -0.18 -4.01 16.76 44.97 0.75 -3.25 16 29 H 0.09 1.47 8.14 -2.38 -0.02 1.46 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 0.94 7.97 -2.39 -0.02 0.92 16 35 H 0.11 1.50 6.24 -2.39 -0.01 1.48 16 36 H 0.10 3.30 5.06 -2.39 -0.01 3.29 16 37 H 0.02 0.76 8.00 -2.38 -0.02 0.74 16 38 H 0.10 3.95 7.55 -2.91 -0.02 3.93 16 39 H 0.10 5.30 6.24 -2.91 -0.02 5.29 16 40 H 0.28 13.85 8.30 -92.70 -0.77 13.08 16 41 H 0.09 4.32 8.06 -2.91 -0.02 4.29 16 42 H 0.11 4.18 8.06 -2.91 -0.02 4.15 16 43 H 0.06 1.41 7.64 -2.39 -0.02 1.39 16 44 H 0.08 2.48 5.01 -2.39 -0.01 2.47 16 45 H 0.39 9.97 8.69 -74.06 -0.64 9.32 16 Total: -1.00 -62.10 378.20 2.46 -59.64 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: 0.39 Total: 33.00 kcal Atomic # 6 Polarization: -38.77 SS G_CDS: 4.49 Total: -34.28 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -3.57 Total: -62.01 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -3.14 Total: -26.42 kcal Atomic # 9 Polarization: -13.58 SS G_CDS: 2.27 Total: -11.31 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.37 kcal Total: -62.10 2.46 -59.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594017713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.102 kcal (2) G-P(sol) polarization free energy of solvation -62.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds