Wall clock time and date at job start Wed Apr 1 2020 04:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35904 * 117.00038 * 2 1 4 4 C 1.38734 * 120.05545 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.94644 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05361 * 359.97336 * 5 4 3 7 7 C 1.50696 * 119.94833 * 180.02562 * 6 5 4 8 8 C 1.50697 * 110.06014 * 187.56159 * 7 6 5 9 9 O 1.20820 * 120.00363 * 238.57906 * 8 7 6 10 10 O 1.34233 * 119.99473 * 58.58995 * 8 7 6 11 11 C 1.45202 * 116.99494 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.46706 * 179.97438 * 11 10 8 13 13 O 1.21287 * 119.99945 * 359.97438 * 12 11 10 14 14 N 1.34781 * 119.99788 * 180.02562 * 12 11 10 15 15 C 1.37091 * 119.99687 * 180.02562 * 14 12 11 16 16 H 1.07998 * 120.00518 * 359.97438 * 15 14 12 17 17 C 1.38956 * 119.99919 * 179.97438 * 15 14 12 18 18 N 1.31406 * 120.00287 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99666 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47458 * 89.99977 * 19 17 15 21 21 H 1.48503 * 109.47081 * 209.99643 * 19 17 15 22 22 H 1.48496 * 109.47190 * 329.99713 * 19 17 15 23 23 C 1.54266 * 110.03364 * 308.98671 * 7 6 5 24 24 C 1.54882 * 104.20156 * 142.88887 * 23 7 6 25 25 C 1.54891 * 102.74681 * 322.05913 * 24 23 7 26 26 C 1.53880 * 110.03102 * 66.14614 * 7 6 5 27 27 C 1.38272 * 120.11055 * 0.29751 * 6 5 4 28 28 C 1.38148 * 120.05461 * 359.45175 * 27 6 5 29 29 H 1.08998 * 109.46983 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47356 * 300.00619 * 1 2 3 31 31 H 1.08994 * 109.46974 * 60.00366 * 1 2 3 32 32 H 1.08003 * 120.02385 * 0.03462 * 4 3 2 33 33 H 1.07991 * 119.97744 * 179.97438 * 5 4 3 34 34 H 1.09004 * 109.47305 * 299.99299 * 11 10 8 35 35 H 1.08998 * 109.47448 * 60.00204 * 11 10 8 36 36 H 0.97003 * 119.99797 * 359.97438 * 14 12 11 37 37 H 0.96998 * 120.00161 * 179.97438 * 18 17 15 38 38 H 1.09008 * 110.48538 * 24.20623 * 23 7 6 39 39 H 1.08996 * 110.48269 * 261.57402 * 23 7 6 40 40 H 1.08999 * 110.76257 * 203.74174 * 24 23 7 41 41 H 1.08999 * 110.75391 * 80.37114 * 24 23 7 42 42 H 1.09001 * 110.48868 * 156.62066 * 25 24 23 43 43 H 1.09002 * 110.48562 * 279.12781 * 25 24 23 44 44 H 1.08996 * 110.03081 * 121.43080 * 26 7 6 45 45 H 1.09002 * 110.06799 * 0.02944 * 26 7 6 46 46 H 1.08008 * 119.97122 * 179.70495 * 27 6 5 47 47 H 1.07998 * 120.02311 * 180.29722 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2849 -0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3020 3.6758 0.0005 7 6 3.9861 5.0185 0.0005 8 6 2.9705 6.1160 0.1874 9 8 2.8561 6.9819 -0.6474 10 8 2.1930 6.1317 1.2816 11 6 1.2374 7.2190 1.3956 12 6 0.4592 7.0714 2.6777 13 8 0.6873 6.1411 3.4218 14 7 -0.4908 7.9725 2.9969 15 6 -1.1983 7.8385 4.1635 16 1 -0.9948 7.0106 4.8265 17 6 -2.1774 8.7678 4.4929 18 7 -2.8560 8.6392 5.6108 19 14 -2.5300 10.1994 3.3458 20 1 -3.5811 9.8070 2.3729 21 1 -2.9990 11.3646 4.1380 22 1 -1.2902 10.5647 2.6146 23 6 5.0389 5.0753 1.1267 24 6 6.2060 5.8893 0.5151 25 6 6.2335 5.3968 -0.9532 26 6 4.7458 5.2230 -1.3220 27 6 1.9211 3.6047 0.0067 28 6 1.2916 2.3751 0.0010 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.0208 0.3799 -0.0015 33 1 5.1345 2.5750 0.0000 34 1 1.7688 8.1708 1.4002 35 1 0.5513 7.1900 0.5492 36 1 -0.6733 8.7163 2.4016 37 1 -3.5392 9.2881 5.8410 38 1 5.3709 4.0708 1.3895 39 1 4.6349 5.5854 2.0011 40 1 7.1446 5.6567 1.0182 41 1 5.9968 6.9580 0.5602 42 1 6.7015 6.1418 -1.5968 43 1 6.7606 4.4455 -1.0267 44 1 4.3798 6.1160 -1.8285 45 1 4.6196 4.3515 -1.9644 46 1 1.3342 4.5114 0.0119 47 1 0.2130 2.3202 0.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731244137.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:20 Heat of formation + Delta-G solvation = -132.468322 kcal Electronic energy + Delta-G solvation = -30915.573479 eV Core-core repulsion = 26642.856596 eV Total energy + Delta-G solvation = -4272.716883 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.33240 -40.03092 -38.80178 -38.05997 -36.89530 -36.05095 -34.07130 -31.87663 -31.76212 -31.08132 -29.15274 -28.76430 -28.10517 -26.87864 -24.66672 -23.44165 -22.31981 -21.78773 -20.91251 -19.66746 -19.39134 -18.59616 -18.44227 -17.53366 -16.79790 -16.75306 -15.93656 -15.87098 -15.84561 -15.54500 -15.20795 -14.89959 -14.47311 -14.07859 -13.91435 -13.74614 -13.59588 -13.27777 -13.17170 -12.97750 -12.84868 -12.48033 -12.28021 -12.19634 -12.15507 -11.96441 -11.46423 -11.34787 -11.28862 -11.26671 -11.06608 -11.00534 -10.96322 -10.72698 -10.66415 -10.51426 -10.24327 -10.05983 -9.68650 -9.07677 -8.67049 -8.30381 -8.19307 -6.40430 -3.93257 1.23632 1.29750 2.18718 2.57712 2.97337 3.01857 3.10722 3.12984 3.54441 3.59607 4.02378 4.20913 4.31964 4.39671 4.54929 4.71021 4.77962 4.87035 4.93329 4.99114 5.02614 5.09513 5.19031 5.23861 5.24481 5.29338 5.31868 5.34438 5.41874 5.44979 5.51738 5.58386 5.66053 5.70863 5.73111 5.85806 5.88941 5.95497 6.03953 6.11803 6.16960 6.29077 6.43070 6.51704 6.61731 7.24541 7.43570 7.78084 7.99845 8.46846 8.82698 9.28795 9.64781 10.71893 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009734 B = 0.003226 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2875.695012 B = 8677.719211 C =10757.610839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.319 6.319 3 C 0.127 3.873 4 C -0.151 4.151 5 C -0.068 4.068 6 C -0.108 4.108 7 C -0.004 4.004 8 C 0.472 3.528 9 O -0.508 6.508 10 O -0.317 6.317 11 C 0.053 3.947 12 C 0.448 3.552 13 O -0.554 6.554 14 N -0.580 5.580 15 C -0.308 4.308 16 H 0.122 0.878 17 C 0.045 3.955 18 N -0.875 5.875 19 Si 0.878 3.122 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.268 1.268 23 C -0.114 4.114 24 C -0.129 4.129 25 C -0.121 4.121 26 C -0.116 4.116 27 C -0.061 4.061 28 C -0.198 4.198 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.373 0.627 37 H 0.275 0.725 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.077 0.923 46 H 0.123 0.877 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.291 -10.607 -16.018 23.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.233 6.233 3 C 0.082 3.918 4 C -0.170 4.170 5 C -0.086 4.086 6 C -0.108 4.108 7 C -0.006 4.006 8 C 0.315 3.685 9 O -0.397 6.397 10 O -0.232 6.232 11 C -0.025 4.025 12 C 0.233 3.767 13 O -0.435 6.435 14 N -0.220 5.220 15 C -0.436 4.436 16 H 0.140 0.860 17 C -0.158 4.158 18 N -0.514 5.514 19 Si 0.704 3.296 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.194 1.194 23 C -0.151 4.151 24 C -0.166 4.166 25 C -0.159 4.159 26 C -0.153 4.153 27 C -0.079 4.079 28 C -0.217 4.217 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.206 0.794 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.111 0.889 45 H 0.096 0.904 46 H 0.141 0.859 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 14.273 -11.086 -15.577 23.859 hybrid contribution -1.005 1.623 -0.761 2.055 sum 13.268 -9.463 -16.338 23.076 Atomic orbital electron populations 1.23082 0.78209 1.03897 1.01764 1.86040 1.21557 1.26939 1.88718 1.19053 0.92408 0.84100 0.96281 1.20327 0.91276 0.98377 1.06977 1.20633 0.99699 0.90450 0.97819 1.19249 0.93326 0.92968 1.05280 1.20020 0.92809 0.88915 0.98808 1.23431 0.80230 0.85777 0.79104 1.90612 1.67460 1.38239 1.43355 1.86639 1.46272 1.48313 1.41934 1.22790 0.91178 0.89186 0.99311 1.19175 0.84018 0.85842 0.87697 1.90616 1.68062 1.32813 1.52005 1.42039 1.33777 1.24470 1.21755 1.19420 1.14423 1.12915 0.96853 0.86020 1.25029 0.96272 0.97995 0.96550 1.69609 1.23033 1.36441 1.22345 0.86692 0.79134 0.82696 0.81063 1.19423 1.19929 1.19366 1.22621 0.93608 1.02291 0.96572 1.22576 0.98336 1.00073 0.95624 1.22362 0.95673 1.01332 0.96506 1.22397 0.94454 1.04142 0.94332 1.20950 0.93733 0.97582 0.95611 1.21214 1.00336 0.92018 1.08100 0.88262 0.92215 0.92632 0.85070 0.85000 0.89424 0.89567 0.79437 0.91391 0.89449 0.89831 0.90744 0.91270 0.91190 0.91287 0.88943 0.90430 0.85918 0.85210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.73 10.50 -19.44 -0.20 -3.93 16 3 C 0.13 1.58 6.69 -39.22 -0.26 1.32 16 4 C -0.15 -1.67 9.99 -39.43 -0.39 -2.07 16 5 C -0.07 -0.72 8.41 -39.61 -0.33 -1.05 16 6 C -0.11 -1.36 4.60 -104.60 -0.48 -1.84 16 7 C 0.00 -0.05 0.72 -155.69 -0.11 -0.17 16 8 C 0.47 7.31 5.16 36.00 0.19 7.50 16 9 O -0.51 -8.46 14.96 -18.74 -0.28 -8.74 16 10 O -0.32 -5.68 8.01 -45.91 -0.37 -6.05 16 11 C 0.05 0.95 5.94 36.01 0.21 1.17 16 12 C 0.45 10.30 7.86 -10.98 -0.09 10.21 16 13 O -0.55 -15.09 16.08 -14.11 -0.23 -15.32 16 14 N -0.58 -13.70 5.09 -10.96 -0.06 -13.75 16 15 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16 16 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 17 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 18 N -0.88 -25.06 13.96 55.50 0.77 -24.29 16 19 Si 0.88 18.98 27.74 -169.99 -4.71 14.26 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 23 C -0.11 -1.24 5.76 -25.08 -0.14 -1.39 16 24 C -0.13 -1.15 6.91 -24.74 -0.17 -1.32 16 25 C -0.12 -0.98 6.83 -25.07 -0.17 -1.15 16 26 C -0.12 -1.19 5.89 -25.61 -0.15 -1.34 16 27 C -0.06 -0.87 8.81 -39.60 -0.35 -1.21 16 28 C -0.20 -2.60 9.04 -39.43 -0.36 -2.96 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 31 H 0.06 0.42 7.66 -51.93 -0.40 0.03 16 32 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 33 H 0.13 1.04 7.31 -52.49 -0.38 0.66 16 34 H 0.09 1.40 8.13 -51.93 -0.42 0.98 16 35 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 36 H 0.37 7.67 5.76 -40.82 -0.24 7.44 16 37 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.09 0.83 6.43 -51.92 -0.33 0.49 16 39 H 0.08 1.07 7.66 -51.93 -0.40 0.67 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 1.09 6.40 -51.93 -0.33 0.76 16 45 H 0.08 0.72 7.49 -51.93 -0.39 0.33 16 46 H 0.12 1.89 5.84 -52.48 -0.31 1.59 16 47 H 0.13 1.53 6.30 -52.49 -0.33 1.20 16 LS Contribution 384.37 15.07 5.79 5.79 Total: -1.00 -33.79 384.37 -7.59 -41.38 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -6.44 Total: 11.33 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -1.87 Total: -0.70 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.72 Total: -38.04 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -1.08 Total: -34.03 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.71 Total: 14.26 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.79 -7.59 -41.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244137.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.085 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds