Wall clock time and date at job start Wed Apr 1 2020 04:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35904 * 117.00038 * 2 1 4 4 C 1.38734 * 120.05545 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.94644 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05361 * 359.97336 * 5 4 3 7 7 C 1.50696 * 119.94833 * 180.02562 * 6 5 4 8 8 C 1.50697 * 110.06014 * 187.56159 * 7 6 5 9 9 O 1.20820 * 120.00363 * 238.57906 * 8 7 6 10 10 O 1.34233 * 119.99473 * 58.58995 * 8 7 6 11 11 C 1.45202 * 116.99494 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.46706 * 179.97438 * 11 10 8 13 13 O 1.21287 * 119.99945 * 359.97438 * 12 11 10 14 14 N 1.34781 * 119.99788 * 180.02562 * 12 11 10 15 15 C 1.37091 * 119.99687 * 180.02562 * 14 12 11 16 16 H 1.07998 * 120.00518 * 359.97438 * 15 14 12 17 17 C 1.38956 * 119.99919 * 179.97438 * 15 14 12 18 18 N 1.31406 * 120.00287 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99666 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47458 * 89.99977 * 19 17 15 21 21 H 1.48503 * 109.47081 * 209.99643 * 19 17 15 22 22 H 1.48496 * 109.47190 * 329.99713 * 19 17 15 23 23 C 1.54266 * 110.03364 * 308.98671 * 7 6 5 24 24 C 1.54882 * 104.20156 * 142.88887 * 23 7 6 25 25 C 1.54891 * 102.74681 * 322.05913 * 24 23 7 26 26 C 1.53880 * 110.03102 * 66.14614 * 7 6 5 27 27 C 1.38272 * 120.11055 * 0.29751 * 6 5 4 28 28 C 1.38148 * 120.05461 * 359.45175 * 27 6 5 29 29 H 1.08998 * 109.46983 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47356 * 300.00619 * 1 2 3 31 31 H 1.08994 * 109.46974 * 60.00366 * 1 2 3 32 32 H 1.08003 * 120.02385 * 0.03462 * 4 3 2 33 33 H 1.07991 * 119.97744 * 179.97438 * 5 4 3 34 34 H 1.09004 * 109.47305 * 299.99299 * 11 10 8 35 35 H 1.08998 * 109.47448 * 60.00204 * 11 10 8 36 36 H 0.97003 * 119.99797 * 359.97438 * 14 12 11 37 37 H 0.96998 * 120.00161 * 179.97438 * 18 17 15 38 38 H 1.09008 * 110.48538 * 24.20623 * 23 7 6 39 39 H 1.08996 * 110.48269 * 261.57402 * 23 7 6 40 40 H 1.08999 * 110.76257 * 203.74174 * 24 23 7 41 41 H 1.08999 * 110.75391 * 80.37114 * 24 23 7 42 42 H 1.09001 * 110.48868 * 156.62066 * 25 24 23 43 43 H 1.09002 * 110.48562 * 279.12781 * 25 24 23 44 44 H 1.08996 * 110.03081 * 121.43080 * 26 7 6 45 45 H 1.09002 * 110.06799 * 0.02944 * 26 7 6 46 46 H 1.08008 * 119.97122 * 179.70495 * 27 6 5 47 47 H 1.07998 * 120.02311 * 180.29722 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2849 -0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3020 3.6758 0.0005 7 6 3.9861 5.0185 0.0005 8 6 2.9705 6.1160 0.1874 9 8 2.8561 6.9819 -0.6474 10 8 2.1930 6.1317 1.2816 11 6 1.2374 7.2190 1.3956 12 6 0.4592 7.0714 2.6777 13 8 0.6873 6.1411 3.4218 14 7 -0.4908 7.9725 2.9969 15 6 -1.1983 7.8385 4.1635 16 1 -0.9948 7.0106 4.8265 17 6 -2.1774 8.7678 4.4929 18 7 -2.8560 8.6392 5.6108 19 14 -2.5300 10.1994 3.3458 20 1 -3.5811 9.8070 2.3729 21 1 -2.9990 11.3646 4.1380 22 1 -1.2902 10.5647 2.6146 23 6 5.0389 5.0753 1.1267 24 6 6.2060 5.8893 0.5151 25 6 6.2335 5.3968 -0.9532 26 6 4.7458 5.2230 -1.3220 27 6 1.9211 3.6047 0.0067 28 6 1.2916 2.3751 0.0010 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.0208 0.3799 -0.0015 33 1 5.1345 2.5750 0.0000 34 1 1.7688 8.1708 1.4002 35 1 0.5513 7.1900 0.5492 36 1 -0.6733 8.7163 2.4016 37 1 -3.5392 9.2881 5.8410 38 1 5.3709 4.0708 1.3895 39 1 4.6349 5.5854 2.0011 40 1 7.1446 5.6567 1.0182 41 1 5.9968 6.9580 0.5602 42 1 6.7015 6.1418 -1.5968 43 1 6.7606 4.4455 -1.0267 44 1 4.3798 6.1160 -1.8285 45 1 4.6196 4.3515 -1.9644 46 1 1.3342 4.5114 0.0119 47 1 0.2130 2.3202 0.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731244137.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:19 Heat of formation + Delta-G solvation = -153.080850 kcal Electronic energy + Delta-G solvation = -30916.467306 eV Core-core repulsion = 26642.856596 eV Total energy + Delta-G solvation = -4273.610709 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.44435 -41.04078 -40.36086 -39.33667 -37.91835 -37.24108 -36.11823 -33.90121 -32.70919 -31.98812 -30.45674 -29.66512 -29.11963 -27.71610 -26.53401 -24.54092 -23.22241 -22.82899 -21.66288 -21.56993 -20.58848 -20.41759 -19.37472 -18.67279 -18.09950 -17.93592 -17.48464 -17.01912 -16.85944 -16.67692 -16.52869 -16.08362 -15.69341 -15.48480 -15.21466 -14.83663 -14.62180 -14.49598 -14.28983 -14.25927 -14.03280 -14.03002 -13.77065 -13.57539 -13.03845 -12.90568 -12.80066 -12.49382 -12.33995 -12.10536 -12.03899 -12.02528 -11.98313 -11.89422 -11.83287 -11.80593 -11.62255 -11.53446 -11.24692 -10.64133 -10.37314 -10.00182 -9.11083 -8.48981 -6.12179 0.32415 0.34078 0.97662 1.25450 1.30119 1.30535 1.42120 1.71588 2.17065 2.33498 2.67217 2.72966 3.04981 3.37258 3.46178 3.59995 3.71746 3.79281 3.89821 3.91936 4.01983 4.05203 4.21279 4.27709 4.32418 4.32988 4.42295 4.47902 4.52859 4.55509 4.68807 4.69904 4.77362 4.92979 4.96609 5.04597 5.12221 5.17507 5.21494 5.27107 5.30340 5.35919 5.44094 5.50045 5.52360 5.72818 5.81803 6.36956 6.42023 6.55647 6.73971 7.21986 7.73749 8.67658 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009734 B = 0.003226 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2875.695012 B = 8677.719211 C =10757.610839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.328 6.328 3 C 0.115 3.885 4 C -0.150 4.150 5 C -0.058 4.058 6 C -0.115 4.115 7 C -0.004 4.004 8 C 0.471 3.529 9 O -0.522 6.522 10 O -0.338 6.338 11 C 0.062 3.938 12 C 0.449 3.551 13 O -0.604 6.604 14 N -0.576 5.576 15 C -0.334 4.334 16 H 0.061 0.939 17 C -0.006 4.006 18 N -0.924 5.924 19 Si 0.960 3.040 20 H -0.255 1.255 21 H -0.270 1.270 22 H -0.233 1.233 23 C -0.115 4.115 24 C -0.125 4.125 25 C -0.113 4.113 26 C -0.113 4.113 27 C -0.089 4.089 28 C -0.213 4.213 29 H 0.125 0.875 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.156 0.844 33 H 0.168 0.832 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.392 0.608 37 H 0.283 0.717 38 H 0.107 0.893 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.054 0.946 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.101 0.899 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.487 -10.204 -18.833 27.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.242 6.242 3 C 0.070 3.930 4 C -0.168 4.168 5 C -0.076 4.076 6 C -0.116 4.116 7 C -0.005 4.005 8 C 0.315 3.685 9 O -0.411 6.411 10 O -0.253 6.253 11 C -0.015 4.015 12 C 0.236 3.764 13 O -0.489 6.489 14 N -0.218 5.218 15 C -0.462 4.462 16 H 0.079 0.921 17 C -0.206 4.206 18 N -0.564 5.564 19 Si 0.779 3.221 20 H -0.179 1.179 21 H -0.195 1.195 22 H -0.156 1.156 23 C -0.152 4.152 24 C -0.163 4.163 25 C -0.150 4.150 26 C -0.150 4.150 27 C -0.107 4.107 28 C -0.232 4.232 29 H 0.143 0.857 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.174 0.826 33 H 0.185 0.815 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.228 0.772 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.075 0.925 40 H 0.115 0.885 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.113 0.887 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.119 0.881 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 16.479 -10.679 -18.415 26.920 hybrid contribution -1.710 1.367 0.190 2.198 sum 14.769 -9.311 -18.224 25.238 Atomic orbital electron populations 1.23297 0.76922 1.05597 1.01740 1.86026 1.22968 1.26551 1.88638 1.19289 0.93256 0.84020 0.96433 1.20718 0.90865 0.99598 1.05631 1.20964 1.01237 0.89254 0.96102 1.19391 0.92787 0.93948 1.05451 1.20230 0.92191 0.87457 1.00592 1.24134 0.79976 0.86376 0.77998 1.90593 1.67917 1.39068 1.43487 1.86652 1.46712 1.48406 1.43490 1.22633 0.91752 0.90500 0.96655 1.20093 0.83257 0.84353 0.88667 1.90589 1.69367 1.34756 1.54147 1.41809 1.33659 1.25412 1.20870 1.18996 1.16650 1.12423 0.98170 0.92135 1.26064 0.94901 1.01190 0.98425 1.69774 1.23711 1.38093 1.24789 0.85441 0.80606 0.77395 0.78640 1.17898 1.19487 1.15650 1.22682 0.93862 1.03511 0.95186 1.22582 0.98325 0.98875 0.96494 1.22380 0.94060 1.02988 0.95606 1.22413 0.95723 1.03820 0.93037 1.20942 0.94770 0.97138 0.97825 1.21295 1.00725 0.92288 1.08878 0.85710 0.93040 0.91907 0.82602 0.81464 0.86778 0.86955 0.77174 0.90763 0.87500 0.92492 0.88481 0.92743 0.90220 0.88667 0.90734 0.89208 0.88115 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -7.42 10.50 -92.47 -0.97 -8.39 16 3 C 0.12 2.81 6.69 22.50 0.15 2.96 16 4 C -0.15 -2.99 9.99 22.37 0.22 -2.77 16 5 C -0.06 -1.08 8.41 22.25 0.19 -0.89 16 6 C -0.12 -2.82 4.60 -19.85 -0.09 -2.91 16 7 C 0.00 -0.08 0.72 -52.95 -0.04 -0.12 16 8 C 0.47 14.56 5.16 71.23 0.37 14.93 16 9 O -0.52 -17.06 14.96 21.98 0.33 -16.73 16 10 O -0.34 -12.33 8.01 -45.09 -0.36 -12.69 16 11 C 0.06 2.19 5.94 71.24 0.42 2.62 16 12 C 0.45 21.25 7.86 87.66 0.69 21.94 16 13 O -0.60 -34.89 16.08 15.75 0.25 -34.64 16 14 N -0.58 -27.50 5.09 -306.98 -1.56 -29.06 16 15 C -0.33 -19.47 10.16 84.04 0.85 -18.61 16 16 H 0.06 4.19 7.39 -2.91 -0.02 4.17 16 17 C -0.01 -0.31 5.50 84.93 0.47 0.16 16 18 N -0.92 -54.76 13.96 21.66 0.30 -54.45 16 19 Si 0.96 38.19 27.74 68.60 1.90 40.09 16 20 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 21 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.23 -7.90 6.52 99.48 0.65 -7.25 16 23 C -0.12 -2.34 5.76 31.67 0.18 -2.15 16 24 C -0.13 -1.92 6.91 31.88 0.22 -1.70 16 25 C -0.11 -1.42 6.83 31.67 0.22 -1.20 16 26 C -0.11 -2.06 5.89 31.32 0.18 -1.88 16 27 C -0.09 -2.60 8.81 22.26 0.20 -2.41 16 28 C -0.21 -5.79 9.04 22.36 0.20 -5.59 16 29 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 0.94 7.66 -2.39 -0.02 0.92 16 31 H 0.06 0.95 7.66 -2.39 -0.02 0.93 16 32 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 33 H 0.17 1.85 7.31 -2.92 -0.02 1.83 16 34 H 0.11 3.46 8.13 -2.38 -0.02 3.45 16 35 H 0.11 3.41 8.13 -2.39 -0.02 3.39 16 36 H 0.39 15.47 5.76 -92.71 -0.53 14.93 16 37 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.11 1.72 6.43 -2.38 -0.02 1.70 16 39 H 0.06 1.46 7.66 -2.39 -0.02 1.44 16 40 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.07 1.66 6.40 -2.39 -0.02 1.64 16 45 H 0.09 1.42 7.49 -2.39 -0.02 1.40 16 46 H 0.10 3.31 5.84 -2.91 -0.02 3.30 16 47 H 0.13 3.31 6.30 -2.91 -0.02 3.29 16 Total: -1.00 -79.80 384.37 5.86 -73.95 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: 0.42 Total: 38.11 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 5.55 Total: 3.82 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -1.26 Total: -83.52 kcal Atomic # 8 Polarization: -71.70 SS G_CDS: -0.75 Total: -72.45 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 1.90 Total: 40.09 kcal Total: -79.80 5.86 -73.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244137.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.135 kcal (2) G-P(sol) polarization free energy of solvation -79.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds