Wall clock time and date at job start Wed Apr 1 2020 04:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21281 * 120.00367 * 2 1 4 4 N 1.34777 * 119.99718 * 179.97438 * 2 1 3 5 5 C 1.48142 * 127.84219 * 359.97438 * 4 2 1 6 6 C 1.54391 * 104.61848 * 140.38776 * 5 4 2 7 7 C 1.54278 * 104.95962 * 23.86692 * 6 5 4 8 8 C 1.53003 * 110.33907 * 118.97767 * 7 6 5 9 9 C 1.50700 * 110.34536 * 241.12669 * 7 6 5 10 10 O 1.20822 * 120.00051 * 358.53073 * 9 7 6 11 11 O 1.34236 * 119.99940 * 178.52638 * 9 7 6 12 12 C 1.45198 * 116.99676 * 180.02562 * 11 9 7 13 13 C 1.50696 * 109.47036 * 180.02562 * 12 11 9 14 14 C 1.38302 * 119.93469 * 89.99651 * 13 12 11 15 15 C 1.38094 * 120.07461 * 180.02562 * 14 13 12 16 16 C 1.38878 * 119.92859 * 0.27306 * 15 14 13 17 17 O 1.35748 * 120.07147 * 179.72501 * 16 15 14 18 18 C 1.34830 * 117.00101 * 354.46447 * 17 16 15 19 19 H 1.07999 * 119.99626 * 5.05831 * 18 17 16 20 20 C 1.38650 * 120.00326 * 185.05731 * 18 17 16 21 21 N 1.31558 * 120.00083 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99968 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47421 * 89.99979 * 22 20 18 24 24 H 1.48502 * 109.47010 * 209.99858 * 22 20 18 25 25 H 1.48498 * 109.47443 * 330.00127 * 22 20 18 26 26 C 1.38878 * 119.86109 * 359.47415 * 16 15 14 27 27 C 1.38104 * 119.93072 * 0.53047 * 26 16 15 28 28 C 1.48426 * 127.82048 * 179.97438 * 4 2 1 29 29 H 1.08993 * 109.47190 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47071 * 300.00308 * 1 2 3 31 31 H 1.08996 * 109.47070 * 59.99933 * 1 2 3 32 32 H 1.09003 * 110.40394 * 21.60539 * 5 4 2 33 33 H 1.08996 * 110.40882 * 259.17449 * 5 4 2 34 34 H 1.08999 * 110.33899 * 264.99748 * 6 5 4 35 35 H 1.09001 * 110.34446 * 142.74523 * 6 5 4 36 36 H 1.09000 * 109.47146 * 181.47982 * 8 7 6 37 37 H 1.08998 * 109.47403 * 301.47326 * 8 7 6 38 38 H 1.08999 * 109.47248 * 61.47615 * 8 7 6 39 39 H 1.08993 * 109.47591 * 59.99800 * 12 11 9 40 40 H 1.09004 * 109.46714 * 299.99824 * 12 11 9 41 41 H 1.08002 * 119.96329 * 0.02562 * 14 13 12 42 42 H 1.08000 * 120.04048 * 180.02562 * 15 14 13 43 43 H 0.97006 * 120.00005 * 180.02562 * 21 20 18 44 44 H 1.08003 * 120.03575 * 180.25499 * 26 16 15 45 45 H 1.07996 * 119.96455 * 179.74788 * 27 26 16 46 46 H 1.08999 * 110.44602 * 100.87618 * 28 4 2 47 47 H 1.08992 * 110.49544 * 338.36156 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.6220 -2.5392 0.0017 6 6 2.5406 -3.3349 -0.9507 7 6 3.8766 -2.5634 -0.9522 8 6 5.0057 -3.4543 -0.4300 9 6 4.1970 -2.0731 -2.3407 10 8 3.4550 -2.3310 -3.2586 11 8 5.3068 -1.3498 -2.5576 12 6 5.5515 -0.9106 -3.9198 13 6 6.8328 -0.1189 -3.9697 14 6 8.0334 -0.7632 -4.2070 15 6 9.2093 -0.0406 -4.2528 16 6 9.1861 1.3338 -4.0548 17 8 10.3410 2.0462 -4.0938 18 6 11.4877 1.3471 -4.2143 19 1 11.4552 0.2771 -4.3571 20 6 12.7084 2.0019 -4.1549 21 7 12.7479 3.3054 -3.9814 22 14 14.2969 1.0335 -4.3225 23 1 14.6853 0.9634 -5.7542 24 1 15.3715 1.7077 -3.5506 25 1 14.0969 -0.3407 -3.7963 26 6 7.9784 1.9787 -3.8221 27 6 6.8058 1.2504 -3.7773 28 6 3.6513 -1.3693 0.0001 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.5989 -2.5331 -0.3741 33 1 1.6568 -2.9629 1.0053 34 1 2.1159 -3.3591 -1.9542 35 1 2.6882 -4.3479 -0.5763 36 1 5.9368 -2.8879 -0.4123 37 1 4.7661 -3.7909 0.5786 38 1 5.1186 -4.3188 -1.0844 39 1 4.7241 -0.2848 -4.2540 40 1 5.6362 -1.7798 -4.5720 41 1 8.0513 -1.8327 -4.3565 42 1 10.1464 -0.5442 -4.4385 43 1 13.6019 3.7636 -3.9402 44 1 7.9566 3.0480 -3.6718 45 1 5.8668 1.7507 -3.5923 46 1 4.0027 -1.6113 1.0031 47 1 4.1584 -0.4813 -0.3772 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747083399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:24 Heat of formation + Delta-G solvation = -118.370060 kcal Electronic energy + Delta-G solvation = -29985.785412 eV Core-core repulsion = 25713.679876 eV Total energy + Delta-G solvation = -4272.105537 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.20298 -39.80461 -39.07593 -37.91312 -36.87719 -36.02008 -33.65033 -32.43049 -30.66418 -30.30525 -30.23797 -29.92141 -26.60479 -26.14606 -25.08573 -24.29202 -22.87898 -22.04878 -20.60797 -19.94122 -19.55778 -18.07309 -17.66068 -17.35378 -17.08096 -16.71861 -16.39591 -15.95892 -15.66758 -14.88388 -14.68305 -14.49441 -14.41823 -13.84346 -13.72269 -13.69294 -13.54783 -13.46520 -12.96207 -12.86114 -12.79287 -12.73963 -12.65331 -12.52169 -12.32609 -12.21675 -11.88716 -11.73387 -11.46387 -11.39281 -11.11007 -11.03144 -10.82055 -10.70829 -10.50299 -10.44883 -10.37854 -10.15289 -9.40577 -9.13634 -8.90381 -8.25641 -7.32528 -6.51724 -4.10419 1.93215 2.10310 2.16875 2.34529 2.56106 2.86725 3.09841 3.11016 3.15433 3.84739 3.91408 4.05597 4.36380 4.40997 4.52159 4.62329 4.77091 4.83263 4.84211 5.03309 5.05149 5.06126 5.15802 5.20717 5.21565 5.24226 5.26945 5.32500 5.36544 5.45863 5.57007 5.62816 5.64940 5.69482 5.73931 5.78871 5.90131 6.14168 6.34592 6.49768 6.61037 6.81942 6.97782 7.16488 7.17842 7.27496 7.36315 7.71110 7.74090 7.84551 7.92980 8.93351 9.61611 10.65734 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017437 B = 0.002103 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.382716 B =13308.852758 C =13857.268433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.531 3.469 3 O -0.539 6.539 4 N -0.629 5.629 5 C 0.101 3.899 6 C -0.130 4.130 7 C -0.069 4.069 8 C -0.138 4.138 9 C 0.472 3.528 10 O -0.512 6.512 11 O -0.344 6.344 12 C 0.130 3.870 13 C -0.205 4.205 14 C -0.044 4.044 15 C -0.238 4.238 16 C 0.164 3.836 17 O -0.172 6.172 18 C -0.393 4.393 19 H 0.094 0.906 20 C 0.040 3.960 21 N -0.859 5.859 22 Si 0.943 3.057 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.195 4.195 27 C -0.047 4.047 28 C 0.115 3.885 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.130 0.870 43 H 0.271 0.729 44 H 0.120 0.880 45 H 0.113 0.887 46 H 0.090 0.910 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.795 -15.608 8.829 28.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.321 3.679 3 O -0.416 6.416 4 N -0.364 5.364 5 C -0.022 4.022 6 C -0.168 4.168 7 C -0.072 4.072 8 C -0.195 4.195 9 C 0.314 3.686 10 O -0.400 6.400 11 O -0.261 6.261 12 C 0.058 3.942 13 C -0.206 4.206 14 C -0.063 4.063 15 C -0.257 4.257 16 C 0.109 3.891 17 O -0.074 6.074 18 C -0.469 4.469 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.493 5.493 22 Si 0.767 3.233 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.214 4.214 27 C -0.066 4.066 28 C -0.008 4.008 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.126 0.874 42 H 0.147 0.853 43 H 0.081 0.919 44 H 0.138 0.862 45 H 0.131 0.869 46 H 0.108 0.892 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.489 -14.518 8.552 27.308 hybrid contribution 0.787 -0.613 -0.294 1.040 sum -20.703 -15.131 8.259 26.940 Atomic orbital electron populations 1.21879 0.91138 1.04357 1.05452 1.20526 0.90349 0.81742 0.75302 1.90779 1.70587 1.30425 1.49793 1.49182 1.07452 1.05930 1.73858 1.22485 0.98461 0.81355 0.99912 1.22782 0.92645 0.98736 1.02592 1.21429 0.98154 0.97221 0.90359 1.21858 0.97146 0.98950 1.01557 1.23233 0.78954 0.75249 0.91146 1.90606 1.49186 1.54986 1.45247 1.86643 1.41254 1.63403 1.34769 1.21725 0.95985 0.97533 0.78975 1.18844 0.92926 0.93544 1.15263 1.20596 0.91504 0.98206 0.95958 1.21128 0.98682 0.94292 1.11640 1.19437 0.87823 0.90411 0.91437 1.83980 1.11452 1.34390 1.77579 1.21366 0.81143 0.92753 1.51670 0.88882 1.25331 0.98763 0.96069 0.96338 1.70042 1.26906 1.07567 1.44751 0.85685 0.79822 0.79068 0.78710 1.19802 1.20171 1.19117 1.20202 0.90279 1.00024 1.10920 1.20527 0.96881 0.92912 0.96234 1.22441 0.81565 0.97712 0.99060 0.90425 0.88557 0.88566 0.89560 0.90393 0.88266 0.88933 0.90344 0.90658 0.91416 0.91299 0.91227 0.87375 0.85264 0.91859 0.86180 0.86906 0.89187 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 10.24 36.01 0.37 -0.72 16 2 C 0.53 5.98 8.03 -10.98 -0.09 5.89 16 3 O -0.54 -8.76 17.37 5.56 0.10 -8.66 16 4 N -0.63 -5.94 3.32 -169.08 -0.56 -6.50 16 5 C 0.10 0.56 6.80 -2.41 -0.02 0.54 16 6 C -0.13 -0.87 6.24 -25.33 -0.16 -1.03 16 7 C -0.07 -0.64 0.96 -154.26 -0.15 -0.79 16 8 C -0.14 -0.98 8.18 37.16 0.30 -0.68 16 9 C 0.47 6.27 6.53 36.01 0.24 6.50 16 10 O -0.51 -7.78 15.01 -18.75 -0.28 -8.06 16 11 O -0.34 -5.19 9.93 -39.27 -0.39 -5.58 16 12 C 0.13 2.01 5.59 36.00 0.20 2.21 16 13 C -0.20 -3.65 5.52 -104.58 -0.58 -4.23 16 14 C -0.04 -0.82 9.69 -39.61 -0.38 -1.20 16 15 C -0.24 -5.13 9.17 -39.40 -0.36 -5.49 16 16 C 0.16 3.95 6.65 -39.11 -0.26 3.69 16 17 O -0.17 -4.86 9.76 0.05 0.00 -4.86 16 18 C -0.39 -10.85 9.49 30.88 0.29 -10.56 16 19 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -24.94 13.67 55.48 0.76 -24.18 16 22 Si 0.94 20.22 29.55 -169.99 -5.02 15.19 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 C -0.19 -4.18 9.99 -39.39 -0.39 -4.57 16 27 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 28 C 0.11 1.14 6.15 -2.25 -0.01 1.13 16 29 H 0.08 0.30 5.99 -51.93 -0.31 -0.01 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.34 6.44 -51.93 -0.33 0.00 16 33 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.10 0.86 6.47 -51.93 -0.34 0.53 16 35 H 0.09 0.39 7.71 -51.93 -0.40 -0.01 16 36 H 0.08 0.66 8.13 -51.93 -0.42 0.24 16 37 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 40 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 41 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.13 2.75 5.64 -52.49 -0.30 2.46 16 43 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.12 2.49 8.06 -52.48 -0.42 2.06 16 45 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 46 H 0.09 0.70 7.85 -51.93 -0.41 0.29 16 47 H 0.10 1.26 7.43 -51.93 -0.39 0.88 16 LS Contribution 394.54 15.07 5.95 5.95 Total: -1.00 -35.22 394.54 -7.46 -42.68 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.52 Total: 3.60 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -1.48 Total: -9.58 kcal Atomic # 7 Polarization: -30.88 SS G_CDS: 0.20 Total: -30.68 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.57 Total: -27.17 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.22 -7.46 -42.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747083399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.690 kcal (2) G-P(sol) polarization free energy of solvation -35.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds