Wall clock time and date at job start Wed Apr 1 2020 04:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21281 * 120.00367 * 2 1 4 4 N 1.34777 * 119.99718 * 179.97438 * 2 1 3 5 5 C 1.48142 * 127.84219 * 359.97438 * 4 2 1 6 6 C 1.54391 * 104.61848 * 140.38776 * 5 4 2 7 7 C 1.54278 * 104.95962 * 23.86692 * 6 5 4 8 8 C 1.53003 * 110.33907 * 118.97767 * 7 6 5 9 9 C 1.50700 * 110.34536 * 241.12669 * 7 6 5 10 10 O 1.20822 * 120.00051 * 358.53073 * 9 7 6 11 11 O 1.34236 * 119.99940 * 178.52638 * 9 7 6 12 12 C 1.45198 * 116.99676 * 180.02562 * 11 9 7 13 13 C 1.50696 * 109.47036 * 180.02562 * 12 11 9 14 14 C 1.38302 * 119.93469 * 89.99651 * 13 12 11 15 15 C 1.38094 * 120.07461 * 180.02562 * 14 13 12 16 16 C 1.38878 * 119.92859 * 0.27306 * 15 14 13 17 17 O 1.35748 * 120.07147 * 179.72501 * 16 15 14 18 18 C 1.34830 * 117.00101 * 354.46447 * 17 16 15 19 19 H 1.07999 * 119.99626 * 5.05831 * 18 17 16 20 20 C 1.38650 * 120.00326 * 185.05731 * 18 17 16 21 21 N 1.31558 * 120.00083 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99968 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47421 * 89.99979 * 22 20 18 24 24 H 1.48502 * 109.47010 * 209.99858 * 22 20 18 25 25 H 1.48498 * 109.47443 * 330.00127 * 22 20 18 26 26 C 1.38878 * 119.86109 * 359.47415 * 16 15 14 27 27 C 1.38104 * 119.93072 * 0.53047 * 26 16 15 28 28 C 1.48426 * 127.82048 * 179.97438 * 4 2 1 29 29 H 1.08993 * 109.47190 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47071 * 300.00308 * 1 2 3 31 31 H 1.08996 * 109.47070 * 59.99933 * 1 2 3 32 32 H 1.09003 * 110.40394 * 21.60539 * 5 4 2 33 33 H 1.08996 * 110.40882 * 259.17449 * 5 4 2 34 34 H 1.08999 * 110.33899 * 264.99748 * 6 5 4 35 35 H 1.09001 * 110.34446 * 142.74523 * 6 5 4 36 36 H 1.09000 * 109.47146 * 181.47982 * 8 7 6 37 37 H 1.08998 * 109.47403 * 301.47326 * 8 7 6 38 38 H 1.08999 * 109.47248 * 61.47615 * 8 7 6 39 39 H 1.08993 * 109.47591 * 59.99800 * 12 11 9 40 40 H 1.09004 * 109.46714 * 299.99824 * 12 11 9 41 41 H 1.08002 * 119.96329 * 0.02562 * 14 13 12 42 42 H 1.08000 * 120.04048 * 180.02562 * 15 14 13 43 43 H 0.97006 * 120.00005 * 180.02562 * 21 20 18 44 44 H 1.08003 * 120.03575 * 180.25499 * 26 16 15 45 45 H 1.07996 * 119.96455 * 179.74788 * 27 26 16 46 46 H 1.08999 * 110.44602 * 100.87618 * 28 4 2 47 47 H 1.08992 * 110.49544 * 338.36156 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.6220 -2.5392 0.0017 6 6 2.5406 -3.3349 -0.9507 7 6 3.8766 -2.5634 -0.9522 8 6 5.0057 -3.4543 -0.4300 9 6 4.1970 -2.0731 -2.3407 10 8 3.4550 -2.3310 -3.2586 11 8 5.3068 -1.3498 -2.5576 12 6 5.5515 -0.9106 -3.9198 13 6 6.8328 -0.1189 -3.9697 14 6 8.0334 -0.7632 -4.2070 15 6 9.2093 -0.0406 -4.2528 16 6 9.1861 1.3338 -4.0548 17 8 10.3410 2.0462 -4.0938 18 6 11.4877 1.3471 -4.2143 19 1 11.4552 0.2771 -4.3571 20 6 12.7084 2.0019 -4.1549 21 7 12.7479 3.3054 -3.9814 22 14 14.2969 1.0335 -4.3225 23 1 14.6853 0.9634 -5.7542 24 1 15.3715 1.7077 -3.5506 25 1 14.0969 -0.3407 -3.7963 26 6 7.9784 1.9787 -3.8221 27 6 6.8058 1.2504 -3.7773 28 6 3.6513 -1.3693 0.0001 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.5989 -2.5331 -0.3741 33 1 1.6568 -2.9629 1.0053 34 1 2.1159 -3.3591 -1.9542 35 1 2.6882 -4.3479 -0.5763 36 1 5.9368 -2.8879 -0.4123 37 1 4.7661 -3.7909 0.5786 38 1 5.1186 -4.3188 -1.0844 39 1 4.7241 -0.2848 -4.2540 40 1 5.6362 -1.7798 -4.5720 41 1 8.0513 -1.8327 -4.3565 42 1 10.1464 -0.5442 -4.4385 43 1 13.6019 3.7636 -3.9402 44 1 7.9566 3.0480 -3.6718 45 1 5.8668 1.7507 -3.5923 46 1 4.0027 -1.6113 1.0031 47 1 4.1584 -0.4813 -0.3772 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747083399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:23 Heat of formation + Delta-G solvation = -140.596509 kcal Electronic energy + Delta-G solvation = -29986.749223 eV Core-core repulsion = 25713.679876 eV Total energy + Delta-G solvation = -4273.069348 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.14345 -40.94840 -40.60641 -38.95676 -38.33700 -37.33407 -34.46380 -34.33161 -32.18515 -31.87900 -30.89853 -30.60089 -27.92378 -27.19253 -26.69346 -25.10567 -23.76545 -23.73830 -22.22987 -20.80645 -20.30959 -19.93682 -18.96611 -18.50008 -18.31651 -17.62060 -17.51454 -16.90041 -16.48473 -16.38795 -16.26637 -16.04484 -15.60604 -15.37339 -15.07851 -14.81492 -14.53499 -14.43750 -14.13799 -14.11458 -13.91869 -13.57638 -13.51606 -13.35878 -13.22025 -13.14591 -13.07043 -13.02071 -12.65870 -12.48473 -12.48058 -12.30013 -12.13111 -12.11227 -11.75433 -11.66138 -11.44659 -11.24415 -11.02846 -10.83743 -9.89892 -9.87447 -9.10947 -8.50683 -6.19634 0.37607 0.49942 1.06084 1.35022 1.43051 1.52712 1.53096 1.72858 1.91894 2.15764 2.77508 3.09364 3.19521 3.40609 3.42640 3.62935 3.77815 3.80759 3.84329 3.93898 4.09151 4.19220 4.22969 4.29566 4.32174 4.41313 4.45209 4.48873 4.58858 4.66305 4.68066 4.72101 4.79467 4.84283 4.93102 4.93306 5.04106 5.08712 5.13672 5.16980 5.19964 5.33482 5.37409 5.48219 5.60708 5.63138 5.97505 6.06036 6.47508 6.62930 6.93296 7.05343 7.70679 8.72073 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017437 B = 0.002103 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.382716 B =13308.852758 C =13857.268433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.517 3.483 3 O -0.606 6.606 4 N -0.631 5.631 5 C 0.099 3.901 6 C -0.124 4.124 7 C -0.064 4.064 8 C -0.134 4.134 9 C 0.466 3.534 10 O -0.532 6.532 11 O -0.356 6.356 12 C 0.131 3.869 13 C -0.182 4.182 14 C -0.039 4.039 15 C -0.242 4.242 16 C 0.128 3.872 17 O -0.226 6.226 18 C -0.416 4.416 19 H 0.106 0.894 20 C -0.022 4.022 21 N -0.919 5.919 22 Si 1.021 2.979 23 H -0.262 1.262 24 H -0.272 1.272 25 H -0.250 1.250 26 C -0.206 4.206 27 C -0.045 4.045 28 C 0.110 3.890 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.060 0.940 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.146 0.854 42 H 0.129 0.871 43 H 0.274 0.726 44 H 0.116 0.884 45 H 0.137 0.863 46 H 0.115 0.885 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.252 -20.030 9.967 32.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.309 3.691 3 O -0.488 6.488 4 N -0.365 5.365 5 C -0.022 4.022 6 C -0.162 4.162 7 C -0.067 4.067 8 C -0.192 4.192 9 C 0.310 3.690 10 O -0.422 6.422 11 O -0.273 6.273 12 C 0.058 3.942 13 C -0.183 4.183 14 C -0.057 4.057 15 C -0.261 4.261 16 C 0.077 3.923 17 O -0.131 6.131 18 C -0.492 4.492 19 H 0.123 0.877 20 C -0.220 4.220 21 N -0.556 5.556 22 Si 0.840 3.160 23 H -0.187 1.187 24 H -0.196 1.196 25 H -0.174 1.174 26 C -0.225 4.225 27 C -0.063 4.063 28 C -0.013 4.013 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.098 0.902 35 H 0.145 0.855 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.164 0.836 42 H 0.146 0.854 43 H 0.083 0.917 44 H 0.134 0.866 45 H 0.155 0.845 46 H 0.133 0.867 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.022 -19.024 9.693 32.139 hybrid contribution 1.159 0.612 -0.626 1.453 sum -22.862 -18.412 9.067 30.723 Atomic orbital electron populations 1.21911 0.87400 1.06658 1.05971 1.21457 0.92218 0.81268 0.74151 1.90741 1.72164 1.32847 1.53011 1.49374 1.07445 1.07229 1.72437 1.22831 0.99057 0.78686 1.01614 1.22845 0.90888 1.00335 1.02126 1.21607 1.00434 0.97333 0.87286 1.21903 0.95442 0.98314 1.03499 1.24160 0.77822 0.74256 0.92777 1.90597 1.49504 1.55679 1.46384 1.86622 1.42598 1.64091 1.33989 1.21635 0.94513 0.98060 0.79951 1.19212 0.94053 0.93401 1.11645 1.20948 0.90320 0.99924 0.94464 1.21259 0.99989 0.93388 1.11459 1.19943 0.87570 0.91868 0.92950 1.83956 1.12605 1.35947 1.80630 1.21888 0.81639 0.93551 1.52123 0.87652 1.26660 1.02529 0.97184 0.95653 1.70191 1.27950 1.09755 1.47704 0.84554 0.74411 0.77917 0.79130 1.18730 1.19642 1.17394 1.20395 0.90607 1.00313 1.11231 1.20826 0.96794 0.93547 0.95170 1.22489 0.82104 0.96387 1.00337 0.87193 0.87428 0.88554 0.87428 0.87066 0.90203 0.85463 0.92071 0.87368 0.90728 0.90922 0.89439 0.83619 0.85362 0.91705 0.86563 0.84496 0.86681 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 10.24 71.24 0.73 -0.97 16 2 C 0.52 11.21 8.03 87.66 0.70 11.91 16 3 O -0.61 -20.41 17.37 -3.03 -0.05 -20.46 16 4 N -0.63 -10.56 3.32 -807.24 -2.68 -13.24 16 5 C 0.10 0.65 6.80 86.54 0.59 1.24 16 6 C -0.12 -1.16 6.24 31.50 0.20 -0.96 16 7 C -0.06 -1.01 0.96 -52.02 -0.05 -1.06 16 8 C -0.13 -1.45 8.18 71.98 0.59 -0.86 16 9 C 0.47 11.59 6.53 71.24 0.47 12.06 16 10 O -0.53 -15.25 15.01 21.97 0.33 -14.92 16 11 O -0.36 -10.24 9.93 -51.47 -0.51 -10.75 16 12 C 0.13 3.78 5.59 71.23 0.40 4.17 16 13 C -0.18 -6.22 5.52 -19.84 -0.11 -6.33 16 14 C -0.04 -1.36 9.69 22.25 0.22 -1.14 16 15 C -0.24 -10.50 9.17 22.39 0.21 -10.29 16 16 C 0.13 6.46 6.65 22.58 0.15 6.61 16 17 O -0.23 -13.63 9.76 -22.72 -0.22 -13.85 16 18 C -0.42 -24.08 9.49 67.92 0.64 -23.44 16 19 H 0.11 5.53 5.20 -2.91 -0.02 5.51 16 20 C -0.02 -1.26 5.49 84.83 0.47 -0.80 16 21 N -0.92 -56.38 13.67 21.61 0.30 -56.09 16 22 Si 1.02 42.38 29.55 68.60 2.03 44.41 16 23 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 26 C -0.21 -9.19 9.99 22.39 0.22 -8.97 16 27 C -0.05 -1.68 9.69 22.25 0.22 -1.46 16 28 C 0.11 2.02 6.15 86.48 0.53 2.55 16 29 H 0.11 0.40 5.99 -2.39 -0.01 0.38 16 30 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.11 0.29 6.44 -2.39 -0.02 0.27 16 33 H 0.11 0.10 8.14 -2.39 -0.02 0.09 16 34 H 0.08 1.13 6.47 -2.39 -0.02 1.12 16 35 H 0.13 0.35 7.71 -2.39 -0.02 0.33 16 36 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 37 H 0.11 0.48 8.12 -2.39 -0.02 0.46 16 38 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 2.06 8.08 -2.39 -0.02 2.04 16 40 H 0.09 2.25 8.08 -2.38 -0.02 2.23 16 41 H 0.15 4.05 8.06 -2.91 -0.02 4.02 16 42 H 0.13 5.52 5.64 -2.91 -0.02 5.51 16 43 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 44 H 0.12 5.14 8.06 -2.91 -0.02 5.11 16 45 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 46 H 0.12 1.50 7.85 -2.39 -0.02 1.48 16 47 H 0.06 1.49 7.43 -2.39 -0.02 1.48 16 Total: -1.00 -85.15 394.54 6.34 -78.80 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.99 Total: 23.84 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: 6.16 Total: -17.74 kcal Atomic # 7 Polarization: -66.94 SS G_CDS: -2.39 Total: -69.33 kcal Atomic # 8 Polarization: -59.52 SS G_CDS: -0.46 Total: -59.98 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -85.15 6.34 -78.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747083399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.792 kcal (2) G-P(sol) polarization free energy of solvation -85.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds