Wall clock time and date at job start Wed Apr 1 2020 04:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21282 * 120.00378 * 2 1 4 4 N 1.34776 * 119.99982 * 180.02562 * 2 1 3 5 5 C 1.47021 * 125.65109 * 359.97308 * 4 2 1 6 6 C 1.54319 * 107.27610 * 178.98838 * 5 4 2 7 7 C 1.55159 * 102.94146 * 337.80401 * 6 5 4 8 8 H 1.08999 * 111.00392 * 277.39046 * 7 6 5 9 9 C 1.52993 * 111.00436 * 153.57619 * 7 6 5 10 10 O 1.45203 * 109.47136 * 174.99976 * 9 7 6 11 11 C 1.34234 * 117.00018 * 179.97438 * 10 9 7 12 12 O 1.20820 * 119.99683 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99735 * 180.02562 * 11 10 9 14 14 C 1.50699 * 109.46735 * 180.02562 * 13 11 10 15 15 C 1.38305 * 119.93408 * 89.99836 * 14 13 11 16 16 C 1.38101 * 120.07071 * 179.97438 * 15 14 13 17 17 C 1.38876 * 119.92956 * 0.02562 * 16 15 14 18 18 O 1.35750 * 120.06861 * 180.02562 * 17 16 15 19 19 C 1.34828 * 117.00075 * 5.53840 * 18 17 16 20 20 H 1.08003 * 120.00029 * 354.94359 * 19 18 17 21 21 C 1.38659 * 120.00122 * 174.94542 * 19 18 17 22 22 N 1.31558 * 119.99705 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00035 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47181 * 89.99980 * 23 21 19 25 25 H 1.48498 * 109.47260 * 210.00361 * 23 21 19 26 26 H 1.48502 * 109.47130 * 330.00179 * 23 21 19 27 27 C 1.38880 * 119.86555 * 0.27954 * 17 16 15 28 28 C 1.38102 * 119.92551 * 359.44514 * 27 17 16 29 29 C 1.47424 * 125.64936 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.47218 * 239.99952 * 1 2 3 31 31 H 1.09001 * 109.47175 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.47731 * 119.99486 * 1 2 3 33 33 H 1.09004 * 109.88538 * 59.56547 * 5 4 2 34 34 H 1.09005 * 110.00962 * 298.47854 * 5 4 2 35 35 H 1.09001 * 110.72322 * 219.44417 * 6 5 4 36 36 H 1.08995 * 110.72129 * 96.17100 * 6 5 4 37 37 H 1.09005 * 109.47319 * 55.00491 * 9 7 6 38 38 H 1.09001 * 109.47222 * 294.99836 * 9 7 6 39 39 H 1.08986 * 109.47293 * 60.00092 * 13 11 10 40 40 H 1.09005 * 109.47046 * 299.99775 * 13 11 10 41 41 H 1.07999 * 119.96326 * 0.02562 * 15 14 13 42 42 H 1.07997 * 120.03156 * 180.02562 * 16 15 14 43 43 H 0.96997 * 119.99350 * 179.97438 * 22 21 19 44 44 H 1.07996 * 120.04097 * 179.72435 * 27 17 16 45 45 H 1.07997 * 119.96688 * 180.27743 * 28 27 17 46 46 H 1.09002 * 110.36634 * 85.24667 * 29 4 2 47 47 H 1.09004 * 110.36981 * 322.92324 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.5746 -2.5066 -0.0006 6 6 2.7280 -3.5316 -0.0273 7 6 3.9082 -2.7115 -0.6119 8 1 3.8593 -2.6779 -1.7003 9 6 5.2518 -3.2736 -0.1434 10 8 6.3312 -2.5590 -0.8011 11 6 7.5840 -2.9329 -0.4967 12 8 7.7723 -3.8279 0.2927 13 6 8.7555 -2.2362 -1.1397 14 6 10.0394 -2.8406 -0.6325 15 6 10.6076 -3.9121 -1.2972 16 6 11.7844 -4.4678 -0.8351 17 6 12.3970 -3.9500 0.2986 18 8 13.5541 -4.4937 0.7549 19 6 14.1171 -5.4581 -0.0007 20 1 13.6065 -5.8222 -0.8800 21 6 15.3516 -5.9824 0.3510 22 7 15.9011 -6.9230 -0.3866 23 14 16.2350 -5.3522 1.8714 24 1 15.8332 -6.1627 3.0490 25 1 17.7025 -5.4619 1.6724 26 1 15.8717 -3.9308 2.1016 27 6 11.8206 -2.8780 0.9675 28 6 10.6467 -2.3231 0.4972 29 6 3.6479 -1.3123 -0.0001 30 1 -0.3634 -0.5138 0.8900 31 1 -0.3633 1.0277 0.0005 32 1 -0.3634 -0.5137 -0.8900 33 1 0.9483 -2.6302 -0.8841 34 1 0.9763 -2.6453 0.9000 35 1 2.4826 -4.3715 -0.6773 36 1 2.9601 -3.8773 0.9800 37 1 5.3105 -4.3324 -0.3956 38 1 5.3401 -3.1517 0.9361 39 1 8.7292 -1.1757 -0.8899 40 1 8.7004 -2.3562 -2.2217 41 1 10.1309 -4.3141 -2.1790 42 1 12.2278 -5.3043 -1.3549 43 1 16.7648 -7.2894 -0.1407 44 1 12.2922 -2.4760 1.8520 45 1 10.2003 -1.4866 1.0143 46 1 4.0333 -1.2661 1.0185 47 1 4.1059 -0.5379 -0.6154 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758560886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:49 Heat of formation + Delta-G solvation = -124.509147 kcal Electronic energy + Delta-G solvation = -28781.460972 eV Core-core repulsion = 24509.089225 eV Total energy + Delta-G solvation = -4272.371747 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.74740 -40.25879 -39.15553 -38.09728 -37.01118 -36.17283 -33.21546 -32.55398 -31.72266 -30.36036 -30.28114 -29.91759 -27.39372 -26.07275 -24.95273 -23.63082 -22.15541 -21.60564 -21.06003 -20.17029 -19.78285 -17.93041 -17.73490 -17.42339 -17.34037 -17.15874 -16.56633 -16.00531 -15.76452 -15.04908 -14.84497 -14.74825 -14.34922 -14.04910 -13.89603 -13.78582 -13.60546 -13.52975 -13.21144 -13.12691 -12.94061 -12.73714 -12.56790 -12.53945 -12.38983 -12.23085 -12.07056 -11.78463 -11.56416 -11.35248 -11.29667 -10.99830 -10.81297 -10.73610 -10.69404 -10.34933 -10.29917 -10.16619 -9.40919 -9.15863 -8.88492 -8.27624 -7.36529 -6.43499 -4.10014 1.98766 2.12563 2.19597 2.30376 2.47938 2.72350 3.22224 3.24981 3.39517 3.82294 3.91319 4.20047 4.22511 4.31433 4.45138 4.57880 4.69228 4.72972 4.76292 4.81032 4.86217 4.90503 4.98121 5.07150 5.07463 5.09899 5.17287 5.23599 5.25738 5.31642 5.36107 5.50176 5.55563 5.63015 5.65319 5.71896 5.77807 6.10277 6.28736 6.36115 6.54102 6.75900 6.98903 7.02110 7.17082 7.26485 7.57956 7.70847 7.77831 7.83744 8.01635 8.91548 9.53494 10.63947 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.030332 B = 0.001563 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.903364 B =17909.167193 C =18199.393736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.524 3.476 3 O -0.543 6.543 4 N -0.624 5.624 5 C 0.102 3.898 6 C -0.126 4.126 7 C -0.101 4.101 8 H 0.099 0.901 9 C 0.077 3.923 10 O -0.363 6.363 11 C 0.456 3.544 12 O -0.491 6.491 13 C -0.052 4.052 14 C -0.175 4.175 15 C -0.055 4.055 16 C -0.220 4.220 17 C 0.165 3.835 18 O -0.215 6.215 19 C -0.390 4.390 20 H 0.107 0.893 21 C 0.064 3.936 22 N -0.878 5.878 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.192 4.192 28 C -0.058 4.058 29 C 0.110 3.890 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.134 0.866 43 H 0.280 0.720 44 H 0.118 0.882 45 H 0.112 0.888 46 H 0.070 0.930 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.725 8.817 -1.507 32.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.314 3.686 3 O -0.421 6.421 4 N -0.359 5.359 5 C -0.021 4.021 6 C -0.164 4.164 7 C -0.120 4.120 8 H 0.117 0.883 9 C 0.002 3.998 10 O -0.281 6.281 11 C 0.299 3.701 12 O -0.376 6.376 13 C -0.090 4.090 14 C -0.176 4.176 15 C -0.073 4.073 16 C -0.240 4.240 17 C 0.113 3.887 18 O -0.120 6.120 19 C -0.465 4.465 20 H 0.124 0.876 21 C -0.140 4.140 22 N -0.516 5.516 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.211 4.211 28 C -0.077 4.077 29 C -0.012 4.012 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.152 0.848 43 H 0.090 0.910 44 H 0.136 0.864 45 H 0.130 0.870 46 H 0.088 0.912 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -30.092 9.063 -1.075 31.446 hybrid contribution 0.351 -0.293 0.608 0.760 sum -29.742 8.770 -0.467 31.011 Atomic orbital electron populations 1.21901 0.91249 1.05542 1.04179 1.20531 0.90441 0.81970 0.75659 1.90755 1.70846 1.30611 1.49839 1.48578 1.07545 1.05884 1.73898 1.22045 0.96281 0.81586 1.02182 1.22662 0.93287 0.97579 1.02833 1.22391 0.92637 0.94858 1.02101 0.88253 1.22877 0.83383 0.96203 0.97305 1.86514 1.15739 1.60413 1.65429 1.24178 0.83491 0.82157 0.80320 1.90711 1.85606 1.28862 1.32447 1.20116 0.87422 1.00184 1.01234 1.18709 0.96982 1.01676 1.00260 1.20589 0.94578 0.94050 0.98074 1.21229 0.98268 1.04466 0.99991 1.19148 0.86606 0.91194 0.91790 1.83570 1.32555 1.49213 1.46680 1.20786 1.03245 1.13198 1.09307 0.87569 1.24473 0.95438 0.95437 0.98607 1.69647 1.17922 1.25827 1.38180 0.86174 0.78125 0.80658 0.81923 1.19867 1.20772 1.18325 1.20159 0.98802 0.98910 1.03207 1.20433 0.94264 0.98376 0.94602 1.22306 0.80330 0.97205 1.01367 0.89431 0.88864 0.89400 0.90924 0.90883 0.89068 0.89779 0.90497 0.90859 0.87613 0.87624 0.87332 0.84822 0.91018 0.86395 0.86984 0.91153 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 9.51 36.00 0.34 -0.39 16 2 C 0.52 4.65 7.96 -10.99 -0.09 4.56 16 3 O -0.54 -7.43 17.34 5.56 0.10 -7.34 16 4 N -0.62 -4.50 3.33 -170.52 -0.57 -5.07 16 5 C 0.10 0.37 6.49 -3.07 -0.02 0.35 16 6 C -0.13 -0.46 6.42 -24.90 -0.16 -0.62 16 7 C -0.10 -0.62 3.31 -88.47 -0.29 -0.91 16 8 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 9 C 0.08 0.65 4.92 37.15 0.18 0.84 16 10 O -0.36 -3.96 10.19 -39.27 -0.40 -4.36 16 11 C 0.46 6.09 7.95 36.01 0.29 6.37 16 12 O -0.49 -8.37 15.78 -18.75 -0.30 -8.67 16 13 C -0.05 -0.63 5.94 -29.03 -0.17 -0.80 16 14 C -0.18 -2.87 4.38 -104.57 -0.46 -3.33 16 15 C -0.05 -0.99 9.69 -39.61 -0.38 -1.37 16 16 C -0.22 -4.79 9.17 -39.40 -0.36 -5.15 16 17 C 0.17 3.85 6.65 -39.11 -0.26 3.59 16 18 O -0.22 -5.73 8.59 0.05 0.00 -5.73 16 19 C -0.39 -11.02 9.95 30.89 0.31 -10.71 16 20 H 0.11 3.06 5.44 -52.48 -0.29 2.77 16 21 C 0.06 1.79 5.49 -17.51 -0.10 1.70 16 22 N -0.88 -25.32 13.96 55.48 0.77 -24.55 16 23 Si 0.91 21.72 28.62 -169.99 -4.86 16.85 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 27 C -0.19 -3.85 9.99 -39.39 -0.39 -4.24 16 28 C -0.06 -1.00 9.69 -39.61 -0.38 -1.39 16 29 C 0.11 0.88 6.35 -2.53 -0.02 0.87 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.43 8.12 -51.93 -0.42 0.00 16 32 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.08 0.30 8.04 -51.93 -0.42 -0.12 16 37 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 38 H 0.07 0.64 7.95 -51.93 -0.41 0.23 16 39 H 0.11 1.03 8.08 -51.94 -0.42 0.61 16 40 H 0.11 1.04 8.08 -51.93 -0.42 0.62 16 41 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.13 3.04 5.64 -52.49 -0.30 2.74 16 43 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 45 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 46 H 0.07 0.59 7.91 -51.93 -0.41 0.18 16 47 H 0.09 0.84 8.04 -51.93 -0.42 0.42 16 LS Contribution 399.74 15.07 6.02 6.02 Total: -1.00 -35.35 399.74 -8.06 -43.42 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.86 Total: 0.05 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -1.97 Total: -10.64 kcal Atomic # 7 Polarization: -29.82 SS G_CDS: 0.21 Total: -29.61 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.60 Total: -26.10 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.86 Total: 16.85 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.35 -8.06 -43.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758560886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.093 kcal (2) G-P(sol) polarization free energy of solvation -35.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds