Wall clock time and date at job start Wed Apr 1 2020 04:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21282 * 120.00378 * 2 1 4 4 N 1.34776 * 119.99982 * 180.02562 * 2 1 3 5 5 C 1.47021 * 125.65109 * 359.97308 * 4 2 1 6 6 C 1.54319 * 107.27610 * 178.98838 * 5 4 2 7 7 C 1.55159 * 102.94146 * 337.80401 * 6 5 4 8 8 H 1.08999 * 111.00392 * 277.39046 * 7 6 5 9 9 C 1.52993 * 111.00436 * 153.57619 * 7 6 5 10 10 O 1.45203 * 109.47136 * 174.99976 * 9 7 6 11 11 C 1.34234 * 117.00018 * 179.97438 * 10 9 7 12 12 O 1.20820 * 119.99683 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99735 * 180.02562 * 11 10 9 14 14 C 1.50699 * 109.46735 * 180.02562 * 13 11 10 15 15 C 1.38305 * 119.93408 * 89.99836 * 14 13 11 16 16 C 1.38101 * 120.07071 * 179.97438 * 15 14 13 17 17 C 1.38876 * 119.92956 * 0.02562 * 16 15 14 18 18 O 1.35750 * 120.06861 * 180.02562 * 17 16 15 19 19 C 1.34828 * 117.00075 * 5.53840 * 18 17 16 20 20 H 1.08003 * 120.00029 * 354.94359 * 19 18 17 21 21 C 1.38659 * 120.00122 * 174.94542 * 19 18 17 22 22 N 1.31558 * 119.99705 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00035 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47181 * 89.99980 * 23 21 19 25 25 H 1.48498 * 109.47260 * 210.00361 * 23 21 19 26 26 H 1.48502 * 109.47130 * 330.00179 * 23 21 19 27 27 C 1.38880 * 119.86555 * 0.27954 * 17 16 15 28 28 C 1.38102 * 119.92551 * 359.44514 * 27 17 16 29 29 C 1.47424 * 125.64936 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.47218 * 239.99952 * 1 2 3 31 31 H 1.09001 * 109.47175 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.47731 * 119.99486 * 1 2 3 33 33 H 1.09004 * 109.88538 * 59.56547 * 5 4 2 34 34 H 1.09005 * 110.00962 * 298.47854 * 5 4 2 35 35 H 1.09001 * 110.72322 * 219.44417 * 6 5 4 36 36 H 1.08995 * 110.72129 * 96.17100 * 6 5 4 37 37 H 1.09005 * 109.47319 * 55.00491 * 9 7 6 38 38 H 1.09001 * 109.47222 * 294.99836 * 9 7 6 39 39 H 1.08986 * 109.47293 * 60.00092 * 13 11 10 40 40 H 1.09005 * 109.47046 * 299.99775 * 13 11 10 41 41 H 1.07999 * 119.96326 * 0.02562 * 15 14 13 42 42 H 1.07997 * 120.03156 * 180.02562 * 16 15 14 43 43 H 0.96997 * 119.99350 * 179.97438 * 22 21 19 44 44 H 1.07996 * 120.04097 * 179.72435 * 27 17 16 45 45 H 1.07997 * 119.96688 * 180.27743 * 28 27 17 46 46 H 1.09002 * 110.36634 * 85.24667 * 29 4 2 47 47 H 1.09004 * 110.36981 * 322.92324 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.5746 -2.5066 -0.0006 6 6 2.7280 -3.5316 -0.0273 7 6 3.9082 -2.7115 -0.6119 8 1 3.8593 -2.6779 -1.7003 9 6 5.2518 -3.2736 -0.1434 10 8 6.3312 -2.5590 -0.8011 11 6 7.5840 -2.9329 -0.4967 12 8 7.7723 -3.8279 0.2927 13 6 8.7555 -2.2362 -1.1397 14 6 10.0394 -2.8406 -0.6325 15 6 10.6076 -3.9121 -1.2972 16 6 11.7844 -4.4678 -0.8351 17 6 12.3970 -3.9500 0.2986 18 8 13.5541 -4.4937 0.7549 19 6 14.1171 -5.4581 -0.0007 20 1 13.6065 -5.8222 -0.8800 21 6 15.3516 -5.9824 0.3510 22 7 15.9011 -6.9230 -0.3866 23 14 16.2350 -5.3522 1.8714 24 1 15.8332 -6.1627 3.0490 25 1 17.7025 -5.4619 1.6724 26 1 15.8717 -3.9308 2.1016 27 6 11.8206 -2.8780 0.9675 28 6 10.6467 -2.3231 0.4972 29 6 3.6479 -1.3123 -0.0001 30 1 -0.3634 -0.5138 0.8900 31 1 -0.3633 1.0277 0.0005 32 1 -0.3634 -0.5137 -0.8900 33 1 0.9483 -2.6302 -0.8841 34 1 0.9763 -2.6453 0.9000 35 1 2.4826 -4.3715 -0.6773 36 1 2.9601 -3.8773 0.9800 37 1 5.3105 -4.3324 -0.3956 38 1 5.3401 -3.1517 0.9361 39 1 8.7292 -1.1757 -0.8899 40 1 8.7004 -2.3562 -2.2217 41 1 10.1309 -4.3141 -2.1790 42 1 12.2278 -5.3043 -1.3549 43 1 16.7648 -7.2894 -0.1407 44 1 12.2922 -2.4760 1.8520 45 1 10.2003 -1.4866 1.0143 46 1 4.0333 -1.2661 1.0185 47 1 4.1059 -0.5379 -0.6154 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758560886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:48 Heat of formation + Delta-G solvation = -146.437506 kcal Electronic energy + Delta-G solvation = -28782.411857 eV Core-core repulsion = 24509.089225 eV Total energy + Delta-G solvation = -4273.322632 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.66625 -41.03992 -40.74795 -38.89611 -38.42526 -37.27739 -34.54387 -33.86378 -33.09941 -31.84554 -30.77301 -30.44513 -28.74077 -27.20074 -26.45327 -24.16017 -23.74545 -22.85105 -21.64164 -21.40507 -20.33725 -19.83983 -19.13026 -18.67404 -18.02496 -17.93109 -17.47504 -16.93253 -16.64223 -16.37756 -16.21360 -15.82420 -15.66599 -15.48273 -15.22615 -14.89751 -14.50428 -14.41219 -14.31093 -14.10941 -14.06860 -13.80285 -13.76088 -13.28906 -13.10499 -13.03232 -13.00800 -12.87803 -12.63695 -12.52023 -12.43774 -12.33138 -12.18439 -11.94842 -11.75094 -11.52997 -11.45491 -11.30030 -11.01256 -10.91279 -9.82405 -9.72900 -9.04999 -8.51453 -6.24214 0.51637 0.55582 1.26627 1.30396 1.34406 1.50564 1.57675 1.72424 2.00948 2.26945 2.75706 3.02784 3.14612 3.33909 3.48446 3.67533 3.76460 3.86815 3.99542 4.07004 4.13388 4.18134 4.26411 4.35098 4.40250 4.42405 4.46610 4.53285 4.54155 4.62591 4.66418 4.67839 4.77542 4.81152 4.90566 4.94355 5.01279 5.08799 5.18665 5.21735 5.29772 5.33523 5.45500 5.53457 5.68538 5.77111 5.88866 6.21258 6.48945 6.82263 6.82664 7.09779 7.56407 8.60042 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.030332 B = 0.001563 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.903364 B =17909.167193 C =18199.393736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.512 3.488 3 O -0.606 6.606 4 N -0.623 5.623 5 C 0.098 3.902 6 C -0.119 4.119 7 C -0.089 4.089 8 H 0.104 0.896 9 C 0.073 3.927 10 O -0.358 6.358 11 C 0.464 3.536 12 O -0.535 6.535 13 C -0.053 4.053 14 C -0.150 4.150 15 C -0.059 4.059 16 C -0.239 4.239 17 C 0.122 3.878 18 O -0.245 6.245 19 C -0.401 4.401 20 H 0.081 0.919 21 C 0.011 3.989 22 N -0.922 5.922 23 Si 0.971 3.029 24 H -0.267 1.267 25 H -0.266 1.266 26 H -0.263 1.263 27 C -0.194 4.194 28 C -0.056 4.056 29 C 0.105 3.895 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.109 0.891 43 H 0.285 0.715 44 H 0.129 0.871 45 H 0.154 0.846 46 H 0.062 0.938 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.389 10.072 -1.361 35.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.304 3.696 3 O -0.488 6.488 4 N -0.357 5.357 5 C -0.024 4.024 6 C -0.157 4.157 7 C -0.108 4.108 8 H 0.122 0.878 9 C -0.001 4.001 10 O -0.275 6.275 11 C 0.308 3.692 12 O -0.424 6.424 13 C -0.090 4.090 14 C -0.151 4.151 15 C -0.077 4.077 16 C -0.258 4.258 17 C 0.073 3.927 18 O -0.152 6.152 19 C -0.477 4.477 20 H 0.099 0.901 21 C -0.187 4.187 22 N -0.562 5.562 23 Si 0.793 3.207 24 H -0.192 1.192 25 H -0.190 1.190 26 H -0.187 1.187 27 C -0.213 4.213 28 C -0.074 4.074 29 C -0.018 4.018 30 H 0.129 0.871 31 H 0.105 0.895 32 H 0.131 0.869 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.131 0.869 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.159 0.841 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.127 0.873 43 H 0.095 0.905 44 H 0.147 0.853 45 H 0.172 0.828 46 H 0.080 0.920 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -33.829 10.310 -0.953 35.378 hybrid contribution 1.097 -0.535 0.455 1.303 sum -32.732 9.775 -0.498 34.164 Atomic orbital electron populations 1.21911 0.87555 1.05990 1.06420 1.21421 0.92248 0.81410 0.74496 1.90719 1.72328 1.32844 1.52915 1.48724 1.07279 1.07082 1.72624 1.22336 0.96450 0.79265 1.04314 1.22722 0.91817 0.97846 1.03331 1.22318 0.92259 0.94026 1.02240 0.87799 1.23108 0.83508 0.96425 0.97092 1.86504 1.15417 1.60340 1.65213 1.24236 0.84420 0.81205 0.79321 1.90720 1.86276 1.30875 1.34552 1.20250 0.84362 1.01469 1.02874 1.19239 0.97813 0.99472 0.98560 1.20940 0.93265 0.94352 0.99122 1.21263 0.99912 1.04514 1.00100 1.19709 0.86504 0.92985 0.93463 1.83512 1.34443 1.50003 1.47265 1.20724 1.03743 1.14118 1.09140 0.90126 1.25276 0.96084 0.95725 1.01647 1.69728 1.18804 1.27522 1.40163 0.85219 0.77600 0.79643 0.78267 1.19218 1.19026 1.18707 1.20500 0.99649 0.97871 1.03315 1.20962 0.92907 0.98899 0.94601 1.22250 0.81275 0.97681 1.00560 0.87064 0.89453 0.86915 0.88644 0.88890 0.86877 0.89496 0.90092 0.91282 0.84103 0.84480 0.84471 0.87287 0.90535 0.85316 0.82849 0.92013 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.51 71.23 0.68 -0.29 16 2 C 0.51 8.54 7.96 87.65 0.70 9.23 16 3 O -0.61 -16.99 17.34 -3.04 -0.05 -17.04 16 4 N -0.62 -7.83 3.33 -811.79 -2.70 -10.53 16 5 C 0.10 0.35 6.49 86.73 0.56 0.91 16 6 C -0.12 -0.46 6.42 31.78 0.20 -0.26 16 7 C -0.09 -0.89 3.31 -9.40 -0.03 -0.92 16 8 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 9 C 0.07 1.08 4.92 71.98 0.35 1.44 16 10 O -0.36 -6.82 10.19 -51.45 -0.52 -7.34 16 11 C 0.46 10.92 7.95 71.24 0.57 11.48 16 12 O -0.54 -17.17 15.78 21.98 0.35 -16.82 16 13 C -0.05 -1.03 5.94 29.10 0.17 -0.86 16 14 C -0.15 -4.45 4.38 -19.83 -0.09 -4.54 16 15 C -0.06 -2.06 9.69 22.25 0.22 -1.84 16 16 C -0.24 -10.77 9.17 22.39 0.21 -10.57 16 17 C 0.12 5.91 6.65 22.58 0.15 6.06 16 18 O -0.24 -13.65 8.59 -22.72 -0.20 -13.84 16 19 C -0.40 -24.10 9.95 67.92 0.68 -23.42 16 20 H 0.08 5.07 5.44 -2.91 -0.02 5.05 16 21 C 0.01 0.66 5.49 84.83 0.47 1.12 16 22 N -0.92 -55.57 13.96 21.61 0.30 -55.27 16 23 Si 0.97 46.13 28.62 68.60 1.96 48.09 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 27 C -0.19 -7.67 9.99 22.39 0.22 -7.44 16 28 C -0.06 -1.75 9.69 22.25 0.22 -1.53 16 29 C 0.11 1.58 6.35 86.86 0.55 2.13 16 30 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.09 0.66 8.12 -2.39 -0.02 0.64 16 32 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.10 -0.02 8.14 -2.38 -0.02 -0.04 16 34 H 0.09 0.03 8.14 -2.38 -0.02 0.01 16 35 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.09 0.33 8.04 -2.39 -0.02 0.31 16 37 H 0.08 1.18 8.13 -2.38 -0.02 1.16 16 38 H 0.07 1.11 7.95 -2.39 -0.02 1.09 16 39 H 0.14 1.92 8.08 -2.39 -0.02 1.90 16 40 H 0.14 1.96 8.08 -2.38 -0.02 1.94 16 41 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 42 H 0.11 5.39 5.64 -2.91 -0.02 5.37 16 43 H 0.29 15.73 8.31 -92.71 -0.77 14.96 16 44 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 45 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 46 H 0.06 1.01 7.91 -2.39 -0.02 0.99 16 47 H 0.06 1.22 8.04 -2.39 -0.02 1.20 16 Total: -1.00 -84.39 399.74 5.94 -78.45 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.98 Total: 13.59 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: 5.82 Total: -19.29 kcal Atomic # 7 Polarization: -63.40 SS G_CDS: -2.40 Total: -65.79 kcal Atomic # 8 Polarization: -54.62 SS G_CDS: -0.43 Total: -55.05 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.96 Total: 48.09 kcal Total: -84.39 5.94 -78.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758560886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.984 kcal (2) G-P(sol) polarization free energy of solvation -84.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds