Wall clock time and date at job start Wed Apr 1 2020 04:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50707 * 119.99635 * 2 1 4 4 N 1.46500 * 109.46793 * 125.00024 * 3 2 1 5 5 C 1.46500 * 119.99836 * 269.99610 * 4 3 2 6 6 C 1.50697 * 109.47470 * 270.00393 * 5 4 3 7 7 O 1.20827 * 119.99548 * 359.97438 * 6 5 4 8 8 O 1.34223 * 120.00014 * 180.02562 * 6 5 4 9 9 C 1.45204 * 116.99678 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47125 * 179.97438 * 9 8 6 11 11 C 1.34774 * 120.00045 * 89.99864 * 4 3 2 12 12 O 1.21282 * 120.00304 * 179.97438 * 11 4 3 13 13 C 1.50704 * 120.00135 * 359.97438 * 11 4 3 14 14 C 1.50699 * 109.47208 * 180.02562 * 13 11 4 15 15 C 1.38328 * 119.96230 * 269.97915 * 14 13 11 16 16 C 1.38281 * 120.13505 * 180.02562 * 15 14 13 17 17 C 1.38120 * 120.06679 * 359.68445 * 16 15 14 18 18 C 1.38852 * 119.93490 * 0.58817 * 17 16 15 19 19 O 1.35752 * 120.07221 * 179.70368 * 18 17 16 20 20 C 1.34829 * 116.99954 * 354.17311 * 19 18 17 21 21 H 1.07998 * 119.99999 * 5.03596 * 20 19 18 22 22 C 1.38656 * 119.99670 * 185.03445 * 20 19 18 23 23 N 1.31550 * 120.00275 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99668 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46814 * 90.00164 * 24 22 20 26 26 H 1.48501 * 109.47378 * 210.00272 * 24 22 20 27 27 H 1.48503 * 109.47143 * 330.00397 * 24 22 20 28 28 C 1.38073 * 119.96534 * 89.99715 * 14 13 11 29 29 H 1.08003 * 120.00586 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.99954 * 179.97438 * 1 2 3 31 31 H 1.07991 * 120.00244 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.46879 * 5.00075 * 3 2 1 33 33 H 1.08997 * 109.47176 * 244.99751 * 3 2 1 34 34 H 1.09006 * 109.46954 * 30.00438 * 5 4 3 35 35 H 1.09003 * 109.47215 * 149.99975 * 5 4 3 36 36 H 1.08997 * 109.47160 * 299.99707 * 9 8 6 37 37 H 1.09000 * 109.47224 * 60.00053 * 9 8 6 38 38 H 1.08997 * 109.46997 * 299.99971 * 10 9 8 39 39 H 1.08997 * 109.47139 * 59.99545 * 10 9 8 40 40 H 1.08996 * 109.47299 * 179.97438 * 10 9 8 41 41 H 1.09002 * 109.46571 * 59.99894 * 13 11 4 42 42 H 1.08992 * 109.46782 * 300.00158 * 13 11 4 43 43 H 1.08001 * 119.93314 * 0.02562 * 15 14 13 44 44 H 1.07993 * 119.96315 * 179.97438 * 16 15 14 45 45 H 1.08001 * 120.03256 * 180.31909 * 17 16 15 46 46 H 0.96999 * 119.99936 * 179.97438 * 23 22 20 47 47 H 1.07996 * 120.03547 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5587 1.8650 2.4248 6 6 2.8440 3.3437 2.4804 7 8 3.3584 3.8956 1.5366 8 8 2.5276 4.0474 3.5788 9 6 2.8317 5.4672 3.5622 10 6 2.4024 6.0962 4.8893 11 6 4.2496 0.8663 0.9824 12 8 5.0199 0.8889 1.9190 13 6 4.6969 0.3175 -0.3479 14 6 6.1311 -0.1342 -0.2484 15 6 7.1555 0.7514 -0.5307 16 6 8.4728 0.3406 -0.4411 17 6 8.7697 -0.9542 -0.0629 18 6 7.7436 -1.8472 0.2156 19 8 8.0321 -3.1222 0.5818 20 6 9.3277 -3.4929 0.5394 21 1 10.0901 -2.7653 0.3033 22 6 9.6813 -4.8082 0.7991 23 7 8.7526 -5.6946 1.0863 24 14 11.4763 -5.3220 0.7397 25 1 12.0838 -5.1542 2.0843 26 1 11.5703 -6.7457 0.3282 27 1 12.2016 -4.4744 -0.2405 28 6 6.4213 -1.4317 0.1240 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3584 2.1317 0.0896 33 1 2.6212 1.4027 -0.9313 34 1 1.4885 1.6967 2.5459 35 1 3.0988 1.3604 3.2260 36 1 3.9036 5.6076 3.4231 37 1 2.2934 5.9445 2.7434 38 1 1.3305 5.9558 5.0279 39 1 2.9403 5.6189 5.7084 40 1 2.6311 7.1618 4.8770 41 1 4.6119 1.0939 -1.1083 42 1 4.0678 -0.5295 -0.6215 43 1 6.9260 1.7659 -0.8218 44 1 9.2704 1.0343 -0.6625 45 1 9.7989 -1.2729 0.0119 46 1 8.9999 -6.6148 1.2675 47 1 5.6211 -2.1229 0.3436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760430717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:50 Heat of formation + Delta-G solvation = -95.393805 kcal Electronic energy + Delta-G solvation = -29805.884259 eV Core-core repulsion = 25534.775048 eV Total energy + Delta-G solvation = -4271.109211 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.92572 -39.85812 -38.79478 -37.02720 -36.46286 -36.18302 -33.44992 -32.41484 -32.14826 -31.93632 -29.53177 -28.91854 -26.93920 -25.98325 -25.15657 -23.59906 -21.88222 -21.52648 -20.86839 -20.49918 -19.17111 -18.07538 -17.62662 -17.35673 -17.08038 -16.73701 -16.59008 -16.05317 -15.38254 -15.02821 -14.85144 -14.54852 -14.33880 -14.30489 -13.80962 -13.64022 -13.52410 -13.38144 -13.27077 -13.09750 -12.68235 -12.51934 -12.41956 -12.32789 -12.04197 -11.95682 -11.86270 -11.64730 -11.43875 -11.22183 -10.82258 -10.81376 -10.77487 -10.72134 -10.55382 -10.40054 -9.85397 -9.78420 -9.27378 -9.04563 -8.77769 -8.00167 -7.14793 -6.38388 -3.97150 1.76284 1.99559 2.10526 2.25447 2.46588 2.77195 3.03879 3.17528 3.17568 3.22455 4.01963 4.37832 4.41098 4.58750 4.59634 4.64661 4.68299 4.72882 4.90986 4.93201 4.96373 5.06727 5.16318 5.18990 5.28508 5.31302 5.35219 5.42692 5.53060 5.57971 5.61691 5.74160 5.81020 5.98535 6.01668 6.18912 6.24546 6.27355 6.40420 6.41669 6.71770 6.98324 7.12874 7.14238 7.33586 7.44240 7.50548 7.53233 7.89641 8.06953 8.16676 9.07569 9.78958 10.80003 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013154 B = 0.002280 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.190576 B =12276.094829 C =13185.036128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.177 4.177 3 C 0.138 3.862 4 N -0.604 5.604 5 C 0.126 3.874 6 C 0.445 3.555 7 O -0.498 6.498 8 O -0.360 6.360 9 C 0.062 3.938 10 C -0.152 4.152 11 C 0.524 3.476 12 O -0.510 6.510 13 C -0.090 4.090 14 C -0.035 4.035 15 C -0.194 4.194 16 C -0.075 4.075 17 C -0.230 4.230 18 C 0.154 3.846 19 O -0.180 6.180 20 C -0.390 4.390 21 H 0.091 0.909 22 C 0.038 3.962 23 N -0.865 5.865 24 Si 0.940 3.060 25 H -0.274 1.274 26 H -0.278 1.278 27 H -0.268 1.268 28 C -0.174 4.174 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.126 0.874 46 H 0.269 0.731 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.206 18.360 0.394 25.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.196 4.196 3 C 0.016 3.984 4 N -0.339 5.339 5 C 0.001 3.999 6 C 0.285 3.715 7 O -0.384 6.384 8 O -0.277 6.277 9 C -0.012 4.012 10 C -0.209 4.209 11 C 0.313 3.687 12 O -0.383 6.383 13 C -0.129 4.129 14 C -0.035 4.035 15 C -0.214 4.214 16 C -0.093 4.093 17 C -0.249 4.249 18 C 0.101 3.899 19 O -0.084 6.084 20 C -0.466 4.466 21 H 0.108 0.892 22 C -0.166 4.166 23 N -0.500 5.500 24 Si 0.765 3.235 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.192 1.192 28 C -0.193 4.193 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.135 0.865 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.137 0.863 35 H 0.146 0.854 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.144 0.856 46 H 0.079 0.921 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -17.731 18.136 0.765 25.375 hybrid contribution 0.933 0.001 -0.114 0.939 sum -16.799 18.137 0.652 24.730 Atomic orbital electron populations 1.23899 0.95689 1.02152 0.99634 1.23438 0.96396 0.99135 1.00600 1.20745 0.92375 0.95537 0.89777 1.47712 1.12881 1.62438 1.10853 1.20822 1.03252 0.86633 0.89211 1.24506 0.75271 0.91372 0.80334 1.90670 1.38956 1.71631 1.37191 1.86493 1.76392 1.23573 1.41223 1.23020 1.01433 0.77269 0.99455 1.21807 1.02716 1.00462 0.95942 1.20893 0.80188 0.76573 0.91057 1.90763 1.51873 1.53935 1.41710 1.20626 0.95798 1.02041 0.94468 1.18663 0.92226 0.93192 0.99453 1.20371 0.92608 0.98418 1.09953 1.20677 0.95662 0.95155 0.97824 1.21175 0.99733 0.94367 1.09628 1.19267 0.92898 0.85984 0.91741 1.83974 1.28871 1.22139 1.73405 1.21311 0.80745 0.94951 1.49611 0.89157 1.25266 1.00034 0.94598 0.96673 1.70038 1.32878 1.03278 1.43847 0.85726 0.80635 0.78265 0.78872 1.19936 1.20314 1.19239 1.19928 0.94278 0.95873 1.09213 0.88513 0.88015 0.86497 0.89974 0.88624 0.86269 0.85415 0.91163 0.91354 0.91495 0.91317 0.90239 0.88166 0.88068 0.87934 0.87491 0.85625 0.92142 0.86830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.07 14.32 29.02 0.42 -0.65 16 2 C -0.18 -1.31 9.74 -36.02 -0.35 -1.66 16 3 C 0.14 1.11 5.65 -5.19 -0.03 1.08 16 4 N -0.60 -6.86 1.94 -176.43 -0.34 -7.20 16 5 C 0.13 1.27 6.00 -5.19 -0.03 1.24 16 6 C 0.44 5.31 8.02 36.00 0.29 5.60 16 7 O -0.50 -7.39 16.18 -18.75 -0.30 -7.69 16 8 O -0.36 -3.82 10.22 -39.24 -0.40 -4.22 16 9 C 0.06 0.54 6.19 37.16 0.23 0.77 16 10 C -0.15 -0.90 10.29 37.16 0.38 -0.51 16 11 C 0.52 8.02 7.66 -10.98 -0.08 7.93 16 12 O -0.51 -10.17 15.61 5.56 0.09 -10.08 16 13 C -0.09 -1.27 4.38 -29.03 -0.13 -1.39 16 14 C -0.03 -0.66 4.37 -104.65 -0.46 -1.12 16 15 C -0.19 -3.70 9.70 -39.53 -0.38 -4.09 16 16 C -0.07 -1.50 10.04 -39.61 -0.40 -1.90 16 17 C -0.23 -5.32 9.17 -39.40 -0.36 -5.68 16 18 C 0.15 3.93 6.65 -39.11 -0.26 3.67 16 19 O -0.18 -5.32 9.76 0.05 0.00 -5.32 16 20 C -0.39 -11.23 9.49 30.89 0.29 -10.94 16 21 H 0.09 2.42 5.21 -52.49 -0.27 2.15 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -25.89 13.67 55.48 0.76 -25.13 16 24 Si 0.94 21.06 29.55 -169.99 -5.02 16.03 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 27 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 28 C -0.17 -3.87 9.65 -39.39 -0.38 -4.25 16 29 H 0.10 0.47 7.84 -52.48 -0.41 0.06 16 30 H 0.10 0.57 8.06 -52.49 -0.42 0.15 16 31 H 0.12 0.97 7.83 -52.49 -0.41 0.55 16 32 H 0.08 0.55 7.72 -51.93 -0.40 0.15 16 33 H 0.10 0.71 6.44 -51.93 -0.33 0.38 16 34 H 0.12 0.76 8.07 -51.93 -0.42 0.34 16 35 H 0.13 1.40 7.42 -51.93 -0.39 1.01 16 36 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 37 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.10 1.16 7.34 -51.93 -0.38 0.78 16 42 H 0.10 1.19 7.71 -51.93 -0.40 0.79 16 43 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 44 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 45 H 0.13 2.88 5.64 -52.49 -0.30 2.59 16 46 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 407.53 15.07 6.14 6.14 Total: -1.00 -37.05 407.53 -7.09 -44.13 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.65 Total: 4.26 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -1.35 Total: -10.92 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.42 Total: -32.33 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.62 Total: -27.31 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.05 -7.09 -44.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760430717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.260 kcal (2) G-P(sol) polarization free energy of solvation -37.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds