Wall clock time and date at job start Wed Apr 1 2020 04:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50707 * 119.99635 * 2 1 4 4 N 1.46500 * 109.46793 * 125.00024 * 3 2 1 5 5 C 1.46500 * 119.99836 * 269.99610 * 4 3 2 6 6 C 1.50697 * 109.47470 * 270.00393 * 5 4 3 7 7 O 1.20827 * 119.99548 * 359.97438 * 6 5 4 8 8 O 1.34223 * 120.00014 * 180.02562 * 6 5 4 9 9 C 1.45204 * 116.99678 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47125 * 179.97438 * 9 8 6 11 11 C 1.34774 * 120.00045 * 89.99864 * 4 3 2 12 12 O 1.21282 * 120.00304 * 179.97438 * 11 4 3 13 13 C 1.50704 * 120.00135 * 359.97438 * 11 4 3 14 14 C 1.50699 * 109.47208 * 180.02562 * 13 11 4 15 15 C 1.38328 * 119.96230 * 269.97915 * 14 13 11 16 16 C 1.38281 * 120.13505 * 180.02562 * 15 14 13 17 17 C 1.38120 * 120.06679 * 359.68445 * 16 15 14 18 18 C 1.38852 * 119.93490 * 0.58817 * 17 16 15 19 19 O 1.35752 * 120.07221 * 179.70368 * 18 17 16 20 20 C 1.34829 * 116.99954 * 354.17311 * 19 18 17 21 21 H 1.07998 * 119.99999 * 5.03596 * 20 19 18 22 22 C 1.38656 * 119.99670 * 185.03445 * 20 19 18 23 23 N 1.31550 * 120.00275 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99668 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46814 * 90.00164 * 24 22 20 26 26 H 1.48501 * 109.47378 * 210.00272 * 24 22 20 27 27 H 1.48503 * 109.47143 * 330.00397 * 24 22 20 28 28 C 1.38073 * 119.96534 * 89.99715 * 14 13 11 29 29 H 1.08003 * 120.00586 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.99954 * 179.97438 * 1 2 3 31 31 H 1.07991 * 120.00244 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.46879 * 5.00075 * 3 2 1 33 33 H 1.08997 * 109.47176 * 244.99751 * 3 2 1 34 34 H 1.09006 * 109.46954 * 30.00438 * 5 4 3 35 35 H 1.09003 * 109.47215 * 149.99975 * 5 4 3 36 36 H 1.08997 * 109.47160 * 299.99707 * 9 8 6 37 37 H 1.09000 * 109.47224 * 60.00053 * 9 8 6 38 38 H 1.08997 * 109.46997 * 299.99971 * 10 9 8 39 39 H 1.08997 * 109.47139 * 59.99545 * 10 9 8 40 40 H 1.08996 * 109.47299 * 179.97438 * 10 9 8 41 41 H 1.09002 * 109.46571 * 59.99894 * 13 11 4 42 42 H 1.08992 * 109.46782 * 300.00158 * 13 11 4 43 43 H 1.08001 * 119.93314 * 0.02562 * 15 14 13 44 44 H 1.07993 * 119.96315 * 179.97438 * 16 15 14 45 45 H 1.08001 * 120.03256 * 180.31909 * 17 16 15 46 46 H 0.96999 * 119.99936 * 179.97438 * 23 22 20 47 47 H 1.07996 * 120.03547 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5587 1.8650 2.4248 6 6 2.8440 3.3437 2.4804 7 8 3.3584 3.8956 1.5366 8 8 2.5276 4.0474 3.5788 9 6 2.8317 5.4672 3.5622 10 6 2.4024 6.0962 4.8893 11 6 4.2496 0.8663 0.9824 12 8 5.0199 0.8889 1.9190 13 6 4.6969 0.3175 -0.3479 14 6 6.1311 -0.1342 -0.2484 15 6 7.1555 0.7514 -0.5307 16 6 8.4728 0.3406 -0.4411 17 6 8.7697 -0.9542 -0.0629 18 6 7.7436 -1.8472 0.2156 19 8 8.0321 -3.1222 0.5818 20 6 9.3277 -3.4929 0.5394 21 1 10.0901 -2.7653 0.3033 22 6 9.6813 -4.8082 0.7991 23 7 8.7526 -5.6946 1.0863 24 14 11.4763 -5.3220 0.7397 25 1 12.0838 -5.1542 2.0843 26 1 11.5703 -6.7457 0.3282 27 1 12.2016 -4.4744 -0.2405 28 6 6.4213 -1.4317 0.1240 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3584 2.1317 0.0896 33 1 2.6212 1.4027 -0.9313 34 1 1.4885 1.6967 2.5459 35 1 3.0988 1.3604 3.2260 36 1 3.9036 5.6076 3.4231 37 1 2.2934 5.9445 2.7434 38 1 1.3305 5.9558 5.0279 39 1 2.9403 5.6189 5.7084 40 1 2.6311 7.1618 4.8770 41 1 4.6119 1.0939 -1.1083 42 1 4.0678 -0.5295 -0.6215 43 1 6.9260 1.7659 -0.8218 44 1 9.2704 1.0343 -0.6625 45 1 9.7989 -1.2729 0.0119 46 1 8.9999 -6.6148 1.2675 47 1 5.6211 -2.1229 0.3436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760430717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:49 Heat of formation + Delta-G solvation = -117.741498 kcal Electronic energy + Delta-G solvation = -29806.853328 eV Core-core repulsion = 25534.775048 eV Total energy + Delta-G solvation = -4272.078280 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.89110 -41.07169 -40.44259 -38.35179 -37.78967 -37.17085 -34.36306 -34.15572 -33.56798 -32.71406 -31.00908 -30.21159 -28.19502 -27.27039 -26.73793 -24.33656 -23.31705 -22.93511 -22.18166 -21.25821 -20.20347 -19.44755 -18.95229 -18.77564 -18.35542 -17.80635 -17.46901 -17.04830 -16.73856 -16.56157 -16.09792 -15.93672 -15.61179 -15.49115 -15.29527 -15.05232 -14.57279 -14.49300 -14.26928 -14.18552 -14.02236 -13.63260 -13.60074 -13.29810 -13.10266 -12.97604 -12.88674 -12.82723 -12.54064 -12.48177 -12.39140 -12.27891 -12.18687 -12.10646 -11.74620 -11.56809 -11.21390 -11.05838 -10.80050 -10.35607 -9.97968 -9.66035 -8.99530 -8.46898 -6.15322 0.48615 0.73575 1.06504 1.16957 1.34044 1.34199 1.43777 1.51947 1.76771 2.15501 2.18004 2.82248 3.14678 3.41257 3.60090 3.65199 3.83952 3.96794 4.03580 4.05109 4.06935 4.08859 4.16622 4.28134 4.31103 4.33832 4.35808 4.48822 4.55382 4.55980 4.71742 4.79291 4.80984 4.90268 5.03081 5.06614 5.11810 5.12619 5.23869 5.28900 5.40726 5.62974 5.70915 5.73431 5.76494 5.86285 6.02541 6.11481 6.24271 6.63470 6.97538 7.05567 7.78518 8.76529 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013154 B = 0.002280 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.190576 B =12276.094829 C =13185.036128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.193 4.193 3 C 0.135 3.865 4 N -0.595 5.595 5 C 0.123 3.877 6 C 0.447 3.553 7 O -0.531 6.531 8 O -0.361 6.361 9 C 0.054 3.946 10 C -0.146 4.146 11 C 0.522 3.478 12 O -0.569 6.569 13 C -0.088 4.088 14 C -0.026 4.026 15 C -0.183 4.183 16 C -0.073 4.073 17 C -0.245 4.245 18 C 0.114 3.886 19 O -0.232 6.232 20 C -0.414 4.414 21 H 0.100 0.900 22 C -0.024 4.024 23 N -0.921 5.921 24 Si 1.020 2.980 25 H -0.264 1.264 26 H -0.269 1.269 27 H -0.253 1.253 28 C -0.189 4.189 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.162 0.838 35 H 0.116 0.884 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.099 0.901 41 H 0.137 0.863 42 H 0.125 0.875 43 H 0.139 0.861 44 H 0.144 0.856 45 H 0.119 0.881 46 H 0.273 0.727 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.628 21.100 -0.599 28.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.213 4.213 3 C 0.014 3.986 4 N -0.327 5.327 5 C -0.002 4.002 6 C 0.289 3.711 7 O -0.420 6.420 8 O -0.277 6.277 9 C -0.019 4.019 10 C -0.203 4.203 11 C 0.312 3.688 12 O -0.447 6.447 13 C -0.127 4.127 14 C -0.027 4.027 15 C -0.202 4.202 16 C -0.091 4.091 17 C -0.264 4.264 18 C 0.064 3.936 19 O -0.139 6.139 20 C -0.490 4.490 21 H 0.117 0.883 22 C -0.221 4.221 23 N -0.559 5.559 24 Si 0.839 3.161 25 H -0.189 1.189 26 H -0.193 1.193 27 H -0.177 1.177 28 C -0.208 4.208 29 H 0.133 0.867 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.179 0.821 35 H 0.134 0.866 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.117 0.883 41 H 0.155 0.845 42 H 0.143 0.857 43 H 0.157 0.843 44 H 0.162 0.838 45 H 0.137 0.863 46 H 0.082 0.918 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.229 20.940 -0.248 28.431 hybrid contribution 1.100 -0.538 0.156 1.234 sum -18.129 20.402 -0.093 27.293 Atomic orbital electron populations 1.24089 0.95211 1.03239 0.97102 1.23270 0.96815 0.98266 1.02902 1.21006 0.92237 0.96587 0.88782 1.47721 1.12040 1.60735 1.12232 1.21058 1.05467 0.85365 0.88286 1.24785 0.74355 0.91927 0.80042 1.90648 1.40546 1.72420 1.38349 1.86500 1.75989 1.24659 1.40591 1.23267 1.00872 0.76398 1.01391 1.21824 1.03145 1.01287 0.94039 1.21015 0.81021 0.76271 0.90542 1.90748 1.53880 1.56723 1.43378 1.20730 0.92824 1.04033 0.95141 1.19146 0.95305 0.91560 0.96657 1.20929 0.92104 0.99822 1.07311 1.21099 0.97484 0.94204 0.96333 1.21288 0.98957 0.95641 1.10538 1.19849 0.94868 0.85460 0.93460 1.83935 1.29348 1.24416 1.76187 1.21817 0.81165 0.95855 1.50205 0.88300 1.26603 1.05516 0.94143 0.95846 1.70184 1.35707 1.03858 1.46153 0.84580 0.73896 0.78180 0.79482 1.18945 1.19314 1.17662 1.20187 0.93146 0.97591 1.09864 0.86695 0.87657 0.87843 0.87969 0.87702 0.82062 0.86609 0.92513 0.90674 0.90588 0.91764 0.88263 0.84550 0.85747 0.84310 0.83840 0.86319 0.91831 0.87210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 14.32 67.78 0.97 -0.45 16 2 C -0.19 -2.36 9.74 25.65 0.25 -2.11 16 3 C 0.13 1.74 5.65 85.64 0.48 2.22 16 4 N -0.59 -12.29 1.94 -830.48 -1.61 -13.90 16 5 C 0.12 2.26 6.00 85.63 0.51 2.78 16 6 C 0.45 10.05 8.02 71.24 0.57 10.62 16 7 O -0.53 -15.02 16.18 21.96 0.36 -14.67 16 8 O -0.36 -7.20 10.22 -51.35 -0.52 -7.72 16 9 C 0.05 0.88 6.19 71.98 0.45 1.32 16 10 C -0.15 -1.45 10.29 71.98 0.74 -0.71 16 11 C 0.52 15.31 7.66 87.66 0.67 15.98 16 12 O -0.57 -22.83 15.61 -3.04 -0.05 -22.88 16 13 C -0.09 -2.29 4.38 29.10 0.13 -2.16 16 14 C -0.03 -0.96 4.37 -19.88 -0.09 -1.05 16 15 C -0.18 -6.52 9.70 22.30 0.22 -6.31 16 16 C -0.07 -2.82 10.04 22.25 0.22 -2.59 16 17 C -0.25 -11.62 9.17 22.39 0.21 -11.41 16 18 C 0.11 6.09 6.65 22.58 0.15 6.24 16 19 O -0.23 -14.68 9.76 -22.74 -0.22 -14.90 16 20 C -0.41 -25.20 9.49 67.92 0.64 -24.55 16 21 H 0.10 5.56 5.21 -2.91 -0.02 5.55 16 22 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 23 N -0.92 -58.01 13.67 21.61 0.30 -57.71 16 24 Si 1.02 44.32 29.55 68.60 2.03 46.35 16 25 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 27 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 28 C -0.19 -8.69 9.65 22.39 0.22 -8.48 16 29 H 0.11 0.63 7.84 -2.91 -0.02 0.60 16 30 H 0.11 0.90 8.06 -2.91 -0.02 0.87 16 31 H 0.10 1.56 7.83 -2.92 -0.02 1.54 16 32 H 0.10 0.96 7.72 -2.39 -0.02 0.94 16 33 H 0.10 1.16 6.44 -2.39 -0.02 1.15 16 34 H 0.16 1.54 8.07 -2.38 -0.02 1.52 16 35 H 0.12 2.50 7.42 -2.39 -0.02 2.48 16 36 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 37 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 38 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.14 2.57 7.34 -2.39 -0.02 2.55 16 42 H 0.12 2.67 7.71 -2.39 -0.02 2.65 16 43 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 44 H 0.14 4.42 8.06 -2.91 -0.02 4.39 16 45 H 0.12 5.66 5.64 -2.91 -0.02 5.64 16 46 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 47 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -87.56 407.53 8.05 -79.51 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.98 Total: 27.53 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: 6.81 Total: -21.60 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -1.32 Total: -71.61 kcal Atomic # 8 Polarization: -59.73 SS G_CDS: -0.44 Total: -60.17 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -87.56 8.05 -79.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760430717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.232 kcal (2) G-P(sol) polarization free energy of solvation -87.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds