Wall clock time and date at job start Wed Apr 1 2020 05:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 116.99875 * 2 1 4 4 O 1.20822 * 120.00160 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99760 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47235 * 185.07062 * 5 3 2 7 7 N 1.46500 * 110.45657 * 302.24400 * 6 5 3 8 8 C 1.34777 * 120.00061 * 294.69588 * 7 6 5 9 9 O 1.21281 * 119.99878 * 5.05792 * 8 7 6 10 10 C 1.50703 * 119.99874 * 185.06449 * 8 7 6 11 11 C 1.50700 * 109.46879 * 179.97438 * 10 8 7 12 12 C 1.37628 * 120.13079 * 265.02014 * 11 10 8 13 13 C 1.38611 * 120.25301 * 179.97438 * 12 11 10 14 14 C 1.38664 * 120.49752 * 0.02562 * 13 12 11 15 15 C 1.37595 * 120.24649 * 359.67387 * 14 13 12 16 16 C 1.40702 * 120.12452 * 85.00123 * 11 10 8 17 17 C 1.41397 * 120.24476 * 0.02562 * 16 11 10 18 18 H 1.07998 * 119.99611 * 330.50723 * 17 16 11 19 19 C 1.39943 * 119.99791 * 150.78239 * 17 16 11 20 20 N 1.30823 * 120.00275 * 349.46693 * 19 17 16 21 21 Si 1.86799 * 120.00106 * 169.46332 * 19 17 16 22 22 H 1.48499 * 109.47181 * 59.99603 * 21 19 17 23 23 H 1.48496 * 109.47299 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47120 * 300.00313 * 21 19 17 25 25 C 1.54507 * 110.51368 * 179.63644 * 6 5 3 26 26 C 1.54795 * 103.91311 * 241.18505 * 25 6 5 27 27 O 1.44426 * 104.85686 * 336.11937 * 26 25 6 28 28 C 1.44423 * 105.27560 * 40.46385 * 27 26 25 29 29 H 1.09003 * 109.47024 * 60.00128 * 1 2 3 30 30 H 1.09002 * 109.47364 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47736 * 299.99805 * 1 2 3 32 32 H 1.09000 * 109.46915 * 65.06949 * 5 3 2 33 33 H 1.08998 * 109.47062 * 305.07204 * 5 3 2 34 34 H 0.97006 * 119.99966 * 114.69203 * 7 6 5 35 35 H 1.09004 * 109.47086 * 59.99705 * 10 8 7 36 36 H 1.08997 * 109.46945 * 299.99763 * 10 8 7 37 37 H 1.08004 * 119.87397 * 359.95886 * 12 11 10 38 38 H 1.07997 * 119.75583 * 180.02562 * 13 12 11 39 39 H 1.08002 * 119.87201 * 179.97438 * 14 13 12 40 40 H 1.07998 * 120.12525 * 180.31919 * 15 14 13 41 41 H 0.97003 * 120.00341 * 180.02562 * 20 19 17 42 42 H 1.08997 * 110.51056 * 359.86658 * 25 6 5 43 43 H 1.08996 * 110.51052 * 122.57579 * 25 6 5 44 44 H 1.08994 * 110.39182 * 217.24702 * 26 25 6 45 45 H 1.09012 * 110.30087 * 94.94454 * 26 25 6 46 46 H 1.09000 * 110.37342 * 200.65635 * 28 27 26 47 47 H 1.09003 * 110.37899 * 78.31808 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0004 2.7364 0.1280 7 7 3.4385 3.5345 -0.9646 8 6 3.8203 3.3001 -2.2357 9 8 4.5577 2.3702 -2.4858 10 6 3.3310 4.1936 -3.3463 11 6 3.8994 3.7202 -4.6592 12 6 5.0515 4.2850 -5.1571 13 6 5.5769 3.8511 -6.3642 14 6 4.9496 2.8454 -7.0838 15 6 3.8002 2.2621 -6.6022 16 6 3.2546 2.6987 -5.3806 17 6 2.0703 2.1111 -4.8791 18 1 1.9033 2.0581 -3.8134 19 6 1.1174 1.5931 -5.7635 20 7 1.2171 1.8318 -7.0459 21 14 -0.2970 0.5608 -5.1128 22 1 -1.0968 1.3650 -4.1543 23 1 -1.1602 0.1351 -6.2436 24 1 0.2421 -0.6388 -4.4232 25 6 5.5416 2.8443 0.1402 26 6 5.8596 3.4765 1.5169 27 8 4.6545 4.1806 1.8883 28 6 3.5698 3.3117 1.4955 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.9521 0.8611 -0.9311 33 1 3.9597 0.7043 0.8419 34 1 2.7917 4.2316 -0.7731 35 1 3.6549 5.2173 -3.1585 36 1 2.2424 4.1588 -3.3876 37 1 5.5480 5.0695 -4.6052 38 1 6.4816 4.2996 -6.7471 39 1 5.3675 2.5154 -8.0234 40 1 3.3161 1.4755 -7.1618 41 1 0.5564 1.4730 -7.6588 42 1 5.9944 1.8563 0.0578 43 1 5.8856 3.4915 -0.6666 44 1 6.6944 4.1720 1.4318 45 1 6.0852 2.6991 2.2470 46 1 2.6456 3.8807 1.3938 47 1 3.4441 2.5091 2.2222 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766542856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:57 Heat of formation + Delta-G solvation = -144.300094 kcal Electronic energy + Delta-G solvation = -32216.911275 eV Core-core repulsion = 27943.681327 eV Total energy + Delta-G solvation = -4273.229947 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.02215 -39.74788 -38.58234 -37.23876 -36.45775 -34.49837 -33.56264 -32.17040 -31.09507 -30.14754 -29.40876 -28.31586 -26.75508 -26.49104 -24.94355 -23.09988 -21.70357 -21.08574 -20.87114 -19.57724 -19.16455 -17.63096 -17.17921 -16.90364 -16.81953 -16.40319 -16.03634 -15.55560 -15.45697 -15.36432 -14.70475 -14.55934 -14.26973 -13.71143 -13.53938 -13.51556 -13.26864 -13.01223 -12.84379 -12.55946 -12.28534 -12.19637 -12.01019 -11.79601 -11.62375 -11.53620 -11.27563 -11.16784 -11.11179 -10.99015 -10.95885 -10.76768 -10.65037 -10.37997 -10.35070 -9.95631 -9.46513 -9.34871 -9.17166 -9.06675 -8.73194 -7.28202 -7.21755 -6.66338 -4.32923 2.27672 2.70987 2.81345 2.99204 3.05321 3.07918 3.27591 3.31088 3.58909 3.78200 3.95632 4.32123 4.62599 4.63690 4.71401 4.87273 4.96488 5.07112 5.11234 5.18854 5.24089 5.28426 5.51045 5.56469 5.57731 5.60775 5.71176 5.82488 5.85964 6.05878 6.06693 6.18719 6.31141 6.42748 6.48338 6.53404 6.55681 6.82760 6.85693 7.13342 7.32237 7.45135 7.67693 7.78490 7.92645 7.99917 8.11623 8.15067 8.35250 8.68275 8.86794 8.95741 9.04379 10.27725 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009391 B = 0.005032 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.979859 B = 5563.502812 C = 7966.938444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.466 3.534 4 O -0.501 6.501 5 C -0.126 4.126 6 C 0.165 3.835 7 N -0.721 5.721 8 C 0.519 3.481 9 O -0.523 6.523 10 C -0.072 4.072 11 C -0.174 4.174 12 C -0.084 4.084 13 C -0.235 4.235 14 C -0.110 4.110 15 C -0.153 4.153 16 C 0.129 3.871 17 C -0.455 4.455 18 H 0.070 0.930 19 C 0.076 3.924 20 N -0.803 5.803 21 Si 0.900 3.100 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.265 1.265 25 C -0.150 4.150 26 C 0.043 3.957 27 O -0.371 6.371 28 C 0.048 3.952 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.133 0.867 33 H 0.108 0.892 34 H 0.403 0.597 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.118 0.882 41 H 0.279 0.721 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.060 0.940 46 H 0.106 0.894 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.285 -0.836 15.980 16.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.277 6.277 3 C 0.309 3.691 4 O -0.388 6.388 5 C -0.164 4.164 6 C 0.077 3.923 7 N -0.376 5.376 8 C 0.307 3.693 9 O -0.397 6.397 10 C -0.112 4.112 11 C -0.176 4.176 12 C -0.102 4.102 13 C -0.254 4.254 14 C -0.128 4.128 15 C -0.172 4.172 16 C 0.126 3.874 17 C -0.486 4.486 18 H 0.088 0.912 19 C -0.140 4.140 20 N -0.429 5.429 21 Si 0.725 3.275 22 H -0.191 1.191 23 H -0.203 1.203 24 H -0.189 1.189 25 C -0.188 4.188 26 C -0.034 4.034 27 O -0.289 6.289 28 C -0.029 4.029 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.151 0.849 33 H 0.126 0.874 34 H 0.238 0.762 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.135 0.865 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.079 0.921 46 H 0.124 0.876 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.449 -1.042 15.656 15.758 hybrid contribution -1.266 -0.427 0.074 1.338 sum 0.183 -1.470 15.730 15.800 Atomic orbital electron populations 1.23254 0.76409 1.03580 1.02591 1.86495 1.23422 1.33614 1.84176 1.23608 0.91914 0.81424 0.72148 1.90613 1.67100 1.36091 1.44995 1.21961 0.88258 0.98548 1.07656 1.21215 0.93507 0.89142 0.88472 1.46157 1.47069 1.38965 1.05424 1.21204 0.79920 0.85523 0.82655 1.90633 1.36039 1.30062 1.82974 1.20264 1.02436 0.96939 0.91521 1.19098 0.99778 1.01744 0.96951 1.20294 0.95403 0.98815 0.95720 1.20325 1.02218 1.04446 0.98402 1.20689 0.96656 0.97474 0.98017 1.21326 0.95330 1.01825 0.98751 1.17331 0.90941 0.88198 0.90898 1.19382 1.01733 1.33601 0.93858 0.91161 1.25822 0.99080 0.94569 0.94540 1.69780 1.33726 1.36232 1.03189 0.86495 0.80716 0.80937 0.79382 1.19145 1.20263 1.18948 1.23316 0.93831 1.03234 0.98435 1.23557 0.88848 0.96410 0.94588 1.89158 1.15060 1.41937 1.82763 1.23716 0.91992 0.94677 0.92527 0.91672 0.88288 0.91997 0.84944 0.87397 0.76174 0.90597 0.88640 0.89789 0.89687 0.89610 0.86455 0.91054 0.89330 0.89183 0.88843 0.92132 0.87576 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.12 10.57 -39.25 -0.41 -5.53 16 3 C 0.47 6.85 7.55 36.01 0.27 7.12 16 4 O -0.50 -7.95 13.61 -18.75 -0.26 -8.20 16 5 C -0.13 -1.63 4.45 -27.88 -0.12 -1.76 16 6 C 0.16 2.11 0.51 -130.25 -0.07 2.05 16 7 N -0.72 -10.86 3.76 -46.15 -0.17 -11.03 16 8 C 0.52 9.81 6.55 -10.98 -0.07 9.73 16 9 O -0.52 -11.42 13.42 5.56 0.07 -11.34 16 10 C -0.07 -1.43 5.19 -29.03 -0.15 -1.58 16 11 C -0.17 -4.18 4.43 -103.91 -0.46 -4.64 16 12 C -0.08 -1.93 9.66 -39.67 -0.38 -2.32 16 13 C -0.23 -5.45 10.05 -39.29 -0.39 -5.85 16 14 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 15 C -0.15 -4.10 8.65 -38.88 -0.34 -4.43 16 16 C 0.13 3.44 5.54 -106.82 -0.59 2.85 16 17 C -0.46 -12.08 8.06 -37.74 -0.30 -12.39 16 18 H 0.07 1.85 6.78 -52.49 -0.36 1.49 16 19 C 0.08 1.94 5.25 -17.34 -0.09 1.85 16 20 N -0.80 -21.01 10.88 55.55 0.60 -20.40 16 21 Si 0.90 19.16 29.57 -169.99 -5.03 14.14 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.26 -5.64 7.11 56.52 0.40 -5.23 16 25 C -0.15 -1.79 5.55 -24.99 -0.14 -1.93 16 26 C 0.04 0.43 7.64 38.10 0.29 0.72 16 27 O -0.37 -4.49 11.65 -35.23 -0.41 -4.90 16 28 C 0.05 0.54 5.87 37.94 0.22 0.76 16 29 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 32 H 0.13 2.08 6.53 -51.93 -0.34 1.74 16 33 H 0.11 1.02 8.09 -51.93 -0.42 0.60 16 34 H 0.40 5.54 8.13 -40.82 -0.33 5.21 16 35 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 36 H 0.10 1.95 7.12 -51.93 -0.37 1.58 16 37 H 0.08 1.70 8.06 -52.48 -0.42 1.28 16 38 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 40 H 0.12 3.24 6.27 -52.49 -0.33 2.91 16 41 H 0.28 6.70 8.30 -40.82 -0.34 6.37 16 42 H 0.09 0.98 7.73 -51.93 -0.40 0.58 16 43 H 0.09 1.28 7.17 -51.93 -0.37 0.91 16 44 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 46 H 0.11 1.22 7.26 -51.93 -0.38 0.85 16 47 H 0.07 0.65 7.83 -51.93 -0.41 0.24 16 LS Contribution 384.49 15.07 5.79 5.79 Total: -1.00 -31.55 384.49 -8.11 -39.66 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -6.64 Total: 13.24 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -1.66 Total: -11.42 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: 0.43 Total: -31.43 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -1.01 Total: -29.98 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.55 -8.11 -39.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766542856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.645 kcal (2) G-P(sol) polarization free energy of solvation -31.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds