Wall clock time and date at job start Wed Apr 1 2020 05:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 113.99653 * 2 1 4 4 C 1.53002 * 109.47124 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47556 * 183.78603 * 4 3 2 6 6 C 1.50696 * 115.54918 * 65.52588 * 5 4 3 7 7 O 1.20825 * 119.99747 * 246.20560 * 6 5 4 8 8 O 1.34229 * 119.99911 * 66.20324 * 6 5 4 9 9 C 1.45206 * 116.99999 * 179.97438 * 8 6 5 10 10 C 1.50694 * 109.46826 * 179.97438 * 9 8 6 11 11 O 1.21276 * 120.00541 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99827 * 179.97438 * 10 9 8 13 13 C 1.39228 * 120.00254 * 183.30578 * 12 10 9 14 14 C 1.39479 * 119.83408 * 323.21542 * 13 12 10 15 15 C 1.36382 * 120.17136 * 179.71394 * 14 13 12 16 16 C 1.40868 * 119.82296 * 0.57614 * 15 14 13 17 17 C 1.41152 * 120.16402 * 179.67633 * 16 15 14 18 18 H 1.08002 * 120.00476 * 157.58101 * 17 16 15 19 19 C 1.39905 * 119.99890 * 337.57905 * 17 16 15 20 20 N 1.30882 * 119.99899 * 332.65533 * 19 17 16 21 21 Si 1.86798 * 120.00306 * 152.65517 * 19 17 16 22 22 H 1.48499 * 109.47072 * 94.98298 * 21 19 17 23 23 H 1.48502 * 109.47261 * 214.98494 * 21 19 17 24 24 H 1.48497 * 109.46755 * 334.98473 * 21 19 17 25 25 C 1.40871 * 119.67275 * 359.70131 * 16 15 14 26 26 C 1.36366 * 119.83114 * 359.97438 * 25 16 15 27 27 C 1.52997 * 117.49905 * 211.20075 * 5 4 3 28 28 C 1.53007 * 117.49624 * 279.85872 * 5 4 3 29 29 H 1.09005 * 109.47660 * 299.99749 * 1 2 3 30 30 H 1.08997 * 109.47496 * 60.00689 * 1 2 3 31 31 H 1.09002 * 109.47037 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47547 * 59.99563 * 3 2 1 33 33 H 1.09001 * 109.47025 * 299.99467 * 3 2 1 34 34 H 1.09006 * 109.47112 * 63.78123 * 4 3 2 35 35 H 1.08999 * 109.47340 * 303.78619 * 4 3 2 36 36 H 1.09009 * 109.46814 * 60.00224 * 9 8 6 37 37 H 1.08998 * 109.47214 * 300.00257 * 9 8 6 38 38 H 0.97001 * 119.99567 * 3.58197 * 12 10 9 39 39 H 1.07998 * 119.91662 * 0.02562 * 14 13 12 40 40 H 1.07993 * 120.09060 * 180.25552 * 15 14 13 41 41 H 0.97002 * 119.99661 * 179.97438 * 20 19 17 42 42 H 1.08006 * 120.08355 * 179.97438 * 25 16 15 43 43 H 1.07998 * 119.91613 * 180.02562 * 26 25 16 44 44 H 1.08995 * 117.49950 * 215.00001 * 27 5 4 45 45 H 1.08999 * 117.49988 * 0.02562 * 27 5 4 46 46 H 1.09000 * 117.49857 * 359.97369 * 28 5 4 47 47 H 1.08997 * 117.49588 * 144.96953 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1574 2.5793 0.0959 6 6 3.9001 3.3192 1.3833 7 8 3.2277 4.3231 1.3790 8 8 4.4178 2.8630 2.5346 9 6 4.1294 3.6266 3.7355 10 6 4.7879 2.9676 4.9199 11 8 5.4368 1.9545 4.7671 12 7 4.6566 3.5047 6.1491 13 6 5.3210 2.9356 7.2322 14 6 5.4569 1.5498 7.3126 15 6 6.1115 0.9853 8.3675 16 6 6.6404 1.8051 9.3837 17 6 7.3133 1.2281 10.4822 18 1 8.0152 1.8160 11.0550 19 6 7.0710 -0.1054 10.8290 20 7 5.9177 -0.6559 10.5462 21 14 8.3933 -1.1003 11.6955 22 1 8.1702 -1.0484 13.1627 23 1 8.3330 -2.5109 11.2352 24 1 9.7281 -0.5325 11.3774 25 6 6.4941 3.2036 9.2984 26 6 5.8428 3.7538 8.2341 27 6 5.5091 2.7981 -0.5867 28 6 4.2398 3.4054 -1.1894 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6884 1.8464 0.8899 33 1 1.6885 1.8463 -0.8900 34 1 3.8621 0.7033 -0.9211 35 1 3.8522 0.5865 0.8550 36 1 3.0513 3.6625 3.8930 37 1 4.5140 4.6402 3.6227 38 1 4.0959 4.2855 6.2798 39 1 5.0472 0.9224 6.5349 40 1 6.2196 -0.0876 8.4263 41 1 5.7499 -1.5806 10.7864 42 1 6.8966 3.8384 10.0740 43 1 5.7301 4.8258 8.1671 44 1 6.2123 3.4771 -0.1046 45 1 5.9550 1.9486 -1.1040 46 1 3.8513 2.9551 -2.1028 47 1 4.1075 4.4839 -1.1038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773247125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:18 Heat of formation + Delta-G solvation = -118.012508 kcal Electronic energy + Delta-G solvation = -29310.938322 eV Core-core repulsion = 25038.848290 eV Total energy + Delta-G solvation = -4272.090032 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.07302 -39.64142 -38.49724 -37.63606 -37.15495 -36.31892 -34.50598 -33.07535 -31.44592 -29.99451 -29.46136 -28.38274 -26.89672 -25.24052 -24.42786 -23.32757 -22.72217 -21.53878 -21.11495 -20.08567 -19.62368 -17.68285 -17.54312 -17.32999 -17.06261 -16.64900 -16.45659 -16.07903 -16.02234 -15.27173 -15.25793 -15.05858 -14.53785 -14.22486 -13.98172 -13.65024 -13.37969 -13.16785 -12.83007 -12.67685 -12.55880 -12.37749 -12.08817 -12.01580 -11.97380 -11.85893 -11.57544 -11.38366 -11.16235 -11.13042 -11.07081 -10.92456 -10.69012 -10.68258 -10.42414 -10.05984 -9.98690 -9.70254 -9.44849 -9.01305 -8.94264 -7.56233 -7.14915 -6.85468 -4.31535 1.85376 2.10520 2.50848 2.91976 3.05409 3.07752 3.07953 3.11337 3.28524 3.45848 3.63452 3.89211 4.18311 4.32102 4.45595 4.51139 4.52649 4.77225 4.82045 4.87906 4.97566 4.99479 5.04617 5.08286 5.12471 5.21203 5.30406 5.38214 5.45580 5.59973 5.64849 5.66502 5.76739 6.10705 6.12858 6.36788 6.72985 6.81360 6.93748 7.00242 7.07876 7.24350 7.45102 7.54481 7.62768 7.89171 8.01255 8.14465 8.24358 8.56036 8.66299 8.82523 8.95781 10.05690 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014054 B = 0.002011 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.873461 B =13916.980005 C =14766.796719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.062 3.938 4 C -0.077 4.077 5 C -0.134 4.134 6 C 0.499 3.501 7 O -0.505 6.505 8 O -0.319 6.319 9 C 0.050 3.950 10 C 0.497 3.503 11 O -0.507 6.507 12 N -0.643 5.643 13 C -0.021 4.021 14 C -0.077 4.077 15 C -0.168 4.168 16 C 0.111 3.889 17 C -0.460 4.460 18 H 0.081 0.919 19 C 0.082 3.918 20 N -0.774 5.774 21 Si 0.902 3.098 22 H -0.270 1.270 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.221 4.221 26 C -0.094 4.094 27 C -0.144 4.144 28 C -0.144 4.144 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.395 0.605 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.283 0.717 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.105 0.895 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.439 5.408 -20.514 22.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.014 4.014 4 C -0.114 4.114 5 C -0.136 4.136 6 C 0.341 3.659 7 O -0.393 6.393 8 O -0.234 6.234 9 C -0.028 4.028 10 C 0.282 3.718 11 O -0.381 6.381 12 N -0.288 5.288 13 C -0.112 4.112 14 C -0.097 4.097 15 C -0.187 4.187 16 C 0.108 3.892 17 C -0.488 4.488 18 H 0.099 0.901 19 C -0.139 4.139 20 N -0.397 5.397 21 Si 0.725 3.275 22 H -0.195 1.195 23 H -0.199 1.199 24 H -0.182 1.182 25 C -0.241 4.241 26 C -0.114 4.114 27 C -0.181 4.181 28 C -0.181 4.181 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.229 0.771 39 H 0.122 0.878 40 H 0.130 0.870 41 H 0.094 0.906 42 H 0.114 0.886 43 H 0.109 0.891 44 H 0.123 0.877 45 H 0.132 0.868 46 H 0.129 0.871 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.205 4.599 -20.578 22.282 hybrid contribution -0.220 0.357 0.681 0.800 sum -7.425 4.955 -19.896 21.807 Atomic orbital electron populations 1.22755 0.80751 1.02912 1.00061 1.87861 1.19944 1.27650 1.95445 1.22480 0.93640 0.84814 1.00510 1.20990 0.93032 0.92224 1.05182 1.20807 1.05659 0.97853 0.89247 1.22533 0.75961 0.82612 0.84767 1.90665 1.36594 1.25074 1.86984 1.86588 1.68615 1.52978 1.15212 1.22779 1.01887 0.95553 0.82546 1.19882 0.82376 0.86041 0.83502 1.90750 1.39587 1.23303 1.84510 1.42717 1.48083 1.32034 1.05976 1.17040 1.10704 0.92126 0.91365 1.20446 0.99294 0.92408 0.97513 1.20811 1.04359 0.99530 0.94047 1.17641 0.88892 0.90929 0.91738 1.19538 1.21721 0.95759 1.11785 0.90095 1.25964 0.95137 0.98227 0.94587 1.69909 1.20478 1.14360 1.34940 0.86412 0.82425 0.79090 0.79562 1.19501 1.19855 1.18174 1.20485 1.08677 0.95197 0.99748 1.20035 0.99532 0.96427 0.95441 1.23194 0.89741 1.03823 1.01310 1.23208 1.00456 1.00246 0.94145 0.93944 0.94068 0.89418 0.93552 0.92847 0.89281 0.88910 0.88452 0.88294 0.77108 0.87848 0.87024 0.90564 0.88569 0.89139 0.87662 0.86831 0.87064 0.87472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.26 10.70 -35.23 -0.38 -4.64 16 3 C 0.06 0.61 5.86 37.16 0.22 0.82 16 4 C -0.08 -0.72 5.46 -26.73 -0.15 -0.86 16 5 C -0.13 -1.29 2.00 -155.66 -0.31 -1.60 16 6 C 0.50 6.33 6.54 36.00 0.24 6.56 16 7 O -0.51 -7.04 16.46 -18.75 -0.31 -7.35 16 8 O -0.32 -4.68 9.75 -45.90 -0.45 -5.13 16 9 C 0.05 0.67 5.95 36.00 0.21 0.88 16 10 C 0.50 8.80 7.72 -10.99 -0.08 8.72 16 11 O -0.51 -11.32 14.05 -14.10 -0.20 -11.52 16 12 N -0.64 -11.15 5.30 -9.74 -0.05 -11.20 16 13 C -0.02 -0.46 6.27 -83.57 -0.52 -0.98 16 14 C -0.08 -1.91 8.60 -39.79 -0.34 -2.26 16 15 C -0.17 -4.48 8.69 -39.26 -0.34 -4.82 16 16 C 0.11 2.95 5.57 -106.80 -0.60 2.36 16 17 C -0.46 -12.08 8.98 -37.85 -0.34 -12.42 16 18 H 0.08 2.03 7.98 -52.49 -0.42 1.61 16 19 C 0.08 2.03 4.91 -17.33 -0.09 1.95 16 20 N -0.77 -19.87 11.44 55.55 0.64 -19.23 16 21 Si 0.90 18.40 29.64 -169.99 -5.04 13.36 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 25 C -0.22 -5.32 9.74 -39.26 -0.38 -5.70 16 26 C -0.09 -2.05 9.90 -39.79 -0.39 -2.44 16 27 C -0.14 -1.08 9.92 -26.69 -0.26 -1.34 16 28 C -0.14 -1.02 9.78 -26.69 -0.26 -1.28 16 29 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.50 7.61 -51.93 -0.40 0.11 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.10 1.10 8.13 -51.92 -0.42 0.68 16 37 H 0.10 1.10 8.13 -51.93 -0.42 0.68 16 38 H 0.40 5.17 8.82 -40.82 -0.36 4.81 16 39 H 0.10 2.60 6.37 -52.49 -0.33 2.26 16 40 H 0.11 3.08 6.36 -52.49 -0.33 2.74 16 41 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 42 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 43 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 44 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.11 0.81 8.01 -51.93 -0.42 0.39 16 LS Contribution 404.63 15.07 6.10 6.10 Total: -1.00 -32.72 404.63 -8.87 -41.58 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -6.88 Total: 9.08 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -2.29 Total: -11.05 kcal Atomic # 7 Polarization: -31.02 SS G_CDS: 0.58 Total: -30.43 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -1.33 Total: -28.64 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.04 Total: 13.36 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.72 -8.87 -41.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773247125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.428 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds