Wall clock time and date at job start Wed Apr 1 2020 04:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00038 * 2 1 4 4 C 1.53004 * 112.84863 * 297.78776 * 3 2 1 5 5 C 1.50705 * 109.46839 * 290.33073 * 4 3 2 6 6 O 1.20823 * 120.00086 * 5.24737 * 5 4 3 7 7 O 1.34225 * 119.99761 * 185.25121 * 5 4 3 8 8 C 1.45201 * 116.99987 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.47120 * 180.02562 * 8 7 5 10 10 O 1.21283 * 120.00182 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00206 * 180.02562 * 9 8 7 12 12 C 1.39231 * 120.00459 * 175.21262 * 11 9 8 13 13 C 1.39481 * 119.83415 * 215.28734 * 12 11 9 14 14 C 1.36373 * 120.17051 * 179.75423 * 13 12 11 15 15 C 1.40872 * 119.82595 * 0.51637 * 14 13 12 16 16 C 1.41153 * 120.16477 * 179.71450 * 15 14 13 17 17 H 1.07996 * 120.00297 * 214.49375 * 16 15 14 18 18 C 1.39910 * 120.00040 * 34.50319 * 16 15 14 19 19 N 1.30880 * 119.99565 * 356.38701 * 18 16 15 20 20 Si 1.86799 * 120.00148 * 176.38843 * 18 16 15 21 21 H 1.48499 * 109.47082 * 60.00168 * 20 18 16 22 22 H 1.48500 * 109.46782 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47213 * 299.99714 * 20 18 16 24 24 C 1.40870 * 119.67339 * 359.73938 * 15 14 13 25 25 C 1.36373 * 119.82896 * 359.97438 * 24 15 14 26 26 C 1.53774 * 113.69288 * 69.05342 * 3 2 1 27 27 C 1.53782 * 87.08166 * 89.12931 * 26 3 2 28 28 C 1.53779 * 87.08087 * 25.43230 * 27 26 3 29 29 H 1.08998 * 109.47022 * 305.35885 * 1 2 3 30 30 H 1.09000 * 109.47030 * 65.35600 * 1 2 3 31 31 H 1.08999 * 109.47128 * 185.35219 * 1 2 3 32 32 H 1.08995 * 109.47473 * 170.32652 * 4 3 2 33 33 H 1.09003 * 109.46734 * 50.32242 * 4 3 2 34 34 H 1.08994 * 109.47536 * 60.00089 * 8 7 5 35 35 H 1.09001 * 109.47052 * 299.99405 * 8 7 5 36 36 H 0.97002 * 119.99397 * 355.20717 * 11 9 8 37 37 H 1.07995 * 119.91636 * 0.02562 * 13 12 11 38 38 H 1.08001 * 120.09096 * 180.24752 * 14 13 12 39 39 H 0.96995 * 119.99395 * 179.97438 * 19 18 16 40 40 H 1.07998 * 120.08853 * 179.97438 * 24 15 14 41 41 H 1.08000 * 119.91888 * 179.97438 * 25 24 15 42 42 H 1.09001 * 113.61783 * 203.67674 * 26 3 2 43 43 H 1.09007 * 113.61721 * 334.58348 * 26 3 2 44 44 H 1.09001 * 113.61283 * 270.88625 * 27 26 3 45 45 H 1.09003 * 113.61868 * 139.98219 * 27 26 3 46 46 H 1.08998 * 113.61351 * 220.02454 * 28 27 26 47 47 H 1.09000 * 113.61486 * 89.11789 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.6514 2.1156 -1.2474 5 6 2.3438 1.5228 -2.4476 6 8 2.9744 0.4982 -2.3364 7 8 2.2599 2.1332 -3.6401 8 6 2.9521 1.5061 -4.7518 9 6 2.7473 2.3273 -5.9987 10 8 2.0830 3.3411 -5.9549 11 7 3.3016 1.9347 -7.1628 12 6 3.0314 2.6369 -8.3343 13 6 2.9270 1.9524 -9.5452 14 6 2.6576 2.6327 -10.6960 15 6 2.4954 4.0316 -10.6614 16 6 2.2224 4.7436 -11.8492 17 1 2.6214 5.7376 -11.9869 18 6 1.4345 4.1616 -12.8483 19 7 1.0095 2.9311 -12.7127 20 14 0.9893 5.1406 -14.3756 21 1 2.2303 5.5418 -15.0856 22 1 0.1541 4.3036 -15.2740 23 1 0.2299 6.3544 -13.9815 24 6 2.6076 4.7166 -9.4356 25 6 2.8715 4.0219 -8.2921 26 6 1.8017 2.0747 1.3151 27 6 3.1108 1.4340 1.8059 28 6 3.5130 1.3107 0.3267 29 1 -0.3633 0.5947 0.8381 30 1 -0.3633 0.4285 -0.9341 31 1 -0.3633 -1.0232 0.0959 32 1 1.9739 3.1483 -1.1152 33 1 0.5725 2.0884 -1.4002 34 1 2.5552 0.5031 -4.9077 35 1 4.0172 1.4448 -4.5285 36 1 3.8888 1.1630 -7.1844 37 1 3.0555 0.8805 -9.5707 38 1 2.5731 2.1009 -11.6322 39 1 0.4631 2.5278 -13.4051 40 1 2.4849 5.7890 -9.4014 41 1 2.9582 4.5456 -7.3515 42 1 1.8610 3.1572 1.2019 43 1 0.9224 1.7541 1.8738 44 1 2.9680 0.4735 2.3010 45 1 3.7436 2.1149 2.3751 46 1 4.0151 0.3733 0.0875 47 1 4.0401 2.1843 -0.0567 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791512424.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:33 Heat of formation + Delta-G solvation = -131.804298 kcal Electronic energy + Delta-G solvation = -29328.434693 eV Core-core repulsion = 25055.746604 eV Total energy + Delta-G solvation = -4272.688089 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.01641 -41.25132 -40.41954 -39.06546 -37.42850 -36.56648 -36.19131 -34.78012 -32.14757 -31.52964 -31.13057 -29.46216 -28.00412 -26.66199 -26.41790 -24.61270 -23.47986 -22.71128 -21.92117 -21.38863 -20.40296 -19.30542 -18.87279 -18.80160 -17.93860 -17.75863 -17.42216 -17.01670 -16.91329 -16.47226 -16.24465 -16.00833 -15.70720 -15.18767 -15.10889 -15.06194 -14.82737 -14.47171 -14.17657 -13.98533 -13.71921 -13.60968 -13.28589 -13.25493 -13.19351 -12.87834 -12.77449 -12.65741 -12.49163 -12.33007 -12.01920 -11.87638 -11.80880 -11.71585 -11.58368 -11.41181 -11.24562 -11.07527 -10.87640 -10.65995 -10.43639 -9.48735 -8.78008 -8.51971 -6.34671 0.73509 1.12124 1.13263 1.21496 1.39836 1.42615 1.51417 1.67260 2.23594 2.38356 2.72598 2.79057 3.41577 3.54368 3.56145 3.60201 3.68193 3.87670 3.93315 4.02413 4.07773 4.28180 4.38303 4.38644 4.42255 4.49479 4.50736 4.56772 4.76598 4.83519 4.89477 4.91239 5.06687 5.09493 5.11798 5.12755 5.21852 5.29385 5.30799 5.39217 5.40485 5.67858 5.87104 5.98718 6.11076 6.29468 6.36794 6.55766 6.66426 6.68878 6.95204 6.97048 7.24773 8.40710 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.030524 B = 0.001639 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.088724 B =17075.973299 C =17099.622630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.376 6.376 3 C 0.093 3.907 4 C -0.131 4.131 5 C 0.461 3.539 6 O -0.513 6.513 7 O -0.352 6.352 8 C 0.061 3.939 9 C 0.501 3.499 10 O -0.556 6.556 11 N -0.636 5.636 12 C 0.017 3.983 13 C -0.115 4.115 14 C -0.160 4.160 15 C 0.068 3.932 16 C -0.497 4.497 17 H 0.074 0.926 18 C 0.028 3.972 19 N -0.840 5.840 20 Si 0.989 3.011 21 H -0.258 1.258 22 H -0.268 1.268 23 H -0.265 1.265 24 C -0.221 4.221 25 C -0.096 4.096 26 C -0.148 4.148 27 C -0.131 4.131 28 C -0.126 4.126 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.093 0.907 32 H 0.141 0.859 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.422 0.578 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.285 0.715 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.059 0.941 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.639 -5.599 25.080 25.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.295 6.295 3 C 0.053 3.947 4 C -0.168 4.168 5 C 0.305 3.695 6 O -0.400 6.400 7 O -0.268 6.268 8 C -0.016 4.016 9 C 0.288 3.712 10 O -0.434 6.434 11 N -0.283 5.283 12 C -0.077 4.077 13 C -0.135 4.135 14 C -0.180 4.180 15 C 0.066 3.934 16 C -0.527 4.527 17 H 0.092 0.908 18 C -0.185 4.185 19 N -0.468 5.468 20 Si 0.810 3.190 21 H -0.182 1.182 22 H -0.192 1.192 23 H -0.190 1.190 24 C -0.241 4.241 25 C -0.116 4.116 26 C -0.185 4.185 27 C -0.169 4.169 28 C -0.164 4.164 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.111 0.889 32 H 0.159 0.841 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.260 0.740 37 H 0.145 0.855 38 H 0.137 0.863 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.105 0.895 46 H 0.078 0.922 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.336 -5.584 25.037 25.687 hybrid contribution -0.251 0.004 -1.134 1.161 sum 1.085 -5.580 23.903 24.570 Atomic orbital electron populations 1.22959 0.80214 1.03815 1.00888 1.87998 1.20753 1.26087 1.94692 1.22551 0.96250 0.83787 0.92151 1.22165 1.03114 1.03006 0.88559 1.24219 0.78690 0.82604 0.84019 1.90690 1.39995 1.24109 1.85236 1.86570 1.68681 1.53405 1.18137 1.22650 1.00353 0.96300 0.82322 1.20676 0.79351 0.86021 0.85141 1.90717 1.40499 1.26634 1.85557 1.42657 1.47940 1.32489 1.05178 1.17264 1.14095 0.90591 0.85714 1.20566 1.02318 0.98987 0.91620 1.21173 1.03973 0.95004 0.97825 1.18066 0.89395 0.93239 0.92724 1.19723 1.29588 1.02352 1.01069 0.90806 1.26751 0.93964 0.95860 1.01876 1.69819 1.28383 1.13998 1.34553 0.85149 0.79127 0.78461 0.76310 1.18204 1.19249 1.18994 1.20926 1.11723 0.98794 0.92667 1.20531 1.00556 0.93156 0.97324 1.23547 0.99258 1.01240 0.94496 1.22751 0.97245 1.01420 0.95448 1.23025 0.93428 1.02743 0.97187 0.91762 0.94091 0.88862 0.84107 0.86012 0.86256 0.85626 0.74041 0.85501 0.86260 0.90408 0.88494 0.87348 0.86862 0.89875 0.90483 0.89520 0.92209 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.51 113.37 1.19 1.42 16 2 O -0.38 -7.36 10.13 -141.57 -1.43 -8.80 16 3 C 0.09 1.41 0.38 -10.27 0.00 1.41 16 4 C -0.13 -1.97 5.23 29.85 0.16 -1.82 16 5 C 0.46 10.43 7.69 71.24 0.55 10.98 16 6 O -0.51 -13.63 14.60 25.58 0.37 -13.25 16 7 O -0.35 -9.28 9.75 -45.02 -0.44 -9.72 16 8 C 0.06 1.44 5.95 71.24 0.42 1.87 16 9 C 0.50 16.54 7.74 87.66 0.68 17.22 16 10 O -0.56 -23.95 13.93 15.76 0.22 -23.73 16 11 N -0.64 -20.38 5.30 -303.11 -1.61 -21.99 16 12 C 0.02 0.71 6.30 38.57 0.24 0.95 16 13 C -0.11 -5.06 9.90 22.13 0.22 -4.85 16 14 C -0.16 -8.27 8.61 22.48 0.19 -8.07 16 15 C 0.07 3.75 5.55 -21.27 -0.12 3.63 16 16 C -0.50 -27.21 9.03 23.39 0.21 -27.00 16 17 H 0.07 3.90 7.85 -2.91 -0.02 3.87 16 18 C 0.03 1.41 5.41 85.24 0.46 1.87 16 19 N -0.84 -44.16 10.60 21.82 0.23 -43.93 16 20 Si 0.99 38.95 29.56 68.60 2.03 40.97 16 21 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 22 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 23 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 24 C -0.22 -11.50 9.74 22.48 0.22 -11.28 16 25 C -0.10 -4.60 8.61 22.14 0.19 -4.41 16 26 C -0.15 -1.40 7.19 31.12 0.22 -1.17 16 27 C -0.13 -1.48 8.02 31.12 0.25 -1.23 16 28 C -0.13 -1.96 6.23 31.12 0.19 -1.77 16 29 H 0.06 0.58 6.78 -2.39 -0.02 0.56 16 30 H 0.04 0.53 6.82 -2.39 -0.02 0.52 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.14 1.44 7.98 -2.39 -0.02 1.43 16 33 H 0.12 1.55 6.61 -2.39 -0.02 1.53 16 34 H 0.12 2.40 8.13 -2.39 -0.02 2.38 16 35 H 0.13 2.32 8.13 -2.39 -0.02 2.31 16 36 H 0.42 9.57 8.82 -92.71 -0.82 8.75 16 37 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 38 H 0.12 6.43 6.14 -2.91 -0.02 6.41 16 39 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 40 H 0.10 4.85 8.06 -2.91 -0.02 4.82 16 41 H 0.11 5.15 6.23 -2.91 -0.02 5.13 16 42 H 0.11 0.64 7.98 -2.39 -0.02 0.62 16 43 H 0.08 0.69 6.93 -2.38 -0.02 0.67 16 44 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.06 1.22 8.07 -2.39 -0.02 1.20 16 47 H 0.10 1.32 8.10 -2.39 -0.02 1.30 16 Total: -1.00 -73.75 390.70 4.84 -68.91 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: 0.19 Total: 33.78 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: 5.28 Total: -22.25 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -1.38 Total: -65.92 kcal Atomic # 8 Polarization: -54.22 SS G_CDS: -1.28 Total: -55.50 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.97 kcal Total: -73.75 4.84 -68.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791512424.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.897 kcal (2) G-P(sol) polarization free energy of solvation -73.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds