Wall clock time and date at job start Wed Apr 1 2020 05:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99363 * 2 1 4 4 C 1.53004 * 109.46845 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46832 * 65.00317 * 4 3 2 6 6 C 1.46501 * 120.00019 * 264.30393 * 5 4 3 7 7 C 1.50705 * 109.46868 * 90.00370 * 6 5 4 8 8 H 1.08003 * 119.99807 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99842 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99670 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00081 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.47114 * 90.00389 * 11 9 7 13 13 H 1.48498 * 109.47083 * 210.00215 * 11 9 7 14 14 H 1.48502 * 109.47138 * 330.00416 * 11 9 7 15 15 C 1.34781 * 120.00041 * 84.30800 * 5 4 3 16 16 O 1.21286 * 119.99896 * 183.35314 * 15 5 4 17 17 C 1.50695 * 120.00055 * 3.34771 * 15 5 4 18 18 H 1.09003 * 110.32913 * 316.05921 * 17 15 5 19 19 C 1.54488 * 110.36898 * 193.81838 * 17 15 5 20 20 C 1.54779 * 102.04989 * 225.87391 * 19 17 15 21 21 H 1.09002 * 110.47153 * 267.95513 * 20 19 17 22 22 C 1.50704 * 110.47000 * 145.52212 * 20 19 17 23 23 C 1.38234 * 120.00079 * 283.17080 * 22 20 19 24 24 C 1.38227 * 120.00133 * 179.80725 * 23 22 20 25 25 C 1.38240 * 120.00137 * 0.40504 * 24 23 22 26 26 C 1.38236 * 119.99589 * 359.84813 * 25 24 23 27 27 C 1.38233 * 120.00231 * 359.96382 * 26 25 24 28 28 O 1.45829 * 104.49498 * 26.73897 * 20 19 17 29 29 C 1.34068 * 109.90461 * 329.45918 * 28 20 19 30 30 O 1.20829 * 125.09138 * 200.83100 * 29 28 20 31 31 H 1.08997 * 109.47090 * 60.00249 * 1 2 3 32 32 H 1.09004 * 109.46797 * 179.97438 * 1 2 3 33 33 H 1.08989 * 109.47759 * 299.99734 * 1 2 3 34 34 H 1.08999 * 109.47203 * 59.99949 * 3 2 1 35 35 H 1.08994 * 109.47822 * 299.99942 * 3 2 1 36 36 H 1.09001 * 109.47304 * 304.99986 * 4 3 2 37 37 H 1.09004 * 109.47143 * 185.00252 * 4 3 2 38 38 H 1.09000 * 109.47184 * 209.99795 * 6 5 4 39 39 H 1.08995 * 109.47082 * 330.00207 * 6 5 4 40 40 H 0.96997 * 119.99879 * 179.97438 * 10 9 7 41 41 H 1.08999 * 110.86836 * 343.98383 * 19 17 15 42 42 H 1.09003 * 110.86894 * 107.65771 * 19 17 15 43 43 H 1.08004 * 119.99584 * 0.02562 * 23 22 20 44 44 H 1.08001 * 120.00272 * 180.22911 * 24 23 22 45 45 H 1.07995 * 120.00529 * 179.83533 * 25 24 23 46 46 H 1.08003 * 119.99759 * 179.97438 * 26 25 24 47 47 H 1.08001 * 120.00193 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5642 -1.2509 6 6 4.2264 -0.8783 -1.3050 7 6 2.9576 -1.5937 -1.6916 8 1 2.0553 -1.0302 -1.8779 9 6 2.9484 -2.9677 -1.8064 10 7 1.8410 -3.5920 -2.1433 11 14 4.5089 -3.9423 -1.4833 12 1 4.5736 -4.3113 -0.0463 13 1 4.5027 -5.1752 -2.3111 14 1 5.6910 -3.1153 -1.8358 15 6 4.1527 1.3204 -2.3526 16 8 4.4589 0.7985 -3.4037 17 6 3.9691 2.8143 -2.2784 18 1 3.0738 3.0578 -1.7063 19 6 3.8800 3.4163 -3.6984 20 6 4.8252 4.6373 -3.5916 21 1 4.2664 5.5280 -3.3043 22 6 5.5413 4.8653 -4.8979 23 6 6.6041 4.0562 -5.2540 24 6 7.2583 4.2628 -6.4539 25 6 6.8552 5.2839 -7.2941 26 6 5.7958 6.0963 -6.9356 27 6 5.1390 5.8872 -5.7374 28 8 5.7753 4.2731 -2.5469 29 6 5.1853 3.4641 -1.6553 30 8 5.5676 3.2813 -0.5237 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8899 34 1 1.6884 1.8464 0.8900 35 1 1.6885 1.8465 -0.8899 36 1 3.8508 0.5687 0.8427 37 1 3.9783 2.1768 0.0903 38 1 5.0001 -1.0856 -2.0443 39 1 4.5563 -1.2268 -0.3263 40 1 1.8346 -4.5585 -2.2244 41 1 4.2428 2.7085 -4.4437 42 1 2.8609 3.7307 -3.9236 43 1 6.9209 3.2604 -4.5961 44 1 8.0863 3.6283 -6.7338 45 1 7.3680 5.4470 -8.2304 46 1 5.4811 6.8943 -7.5918 47 1 4.3116 6.5222 -5.4571 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809691101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:40 Heat of formation + Delta-G solvation = -114.432350 kcal Electronic energy + Delta-G solvation = -31584.506791 eV Core-core repulsion = 27312.572007 eV Total energy + Delta-G solvation = -4271.934785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.61105 -39.45435 -38.86896 -37.62676 -37.18475 -34.94386 -33.44156 -32.50157 -31.78104 -31.11209 -29.69371 -28.14673 -26.98693 -25.62463 -23.78232 -23.00702 -22.67031 -22.38563 -21.57297 -21.09259 -18.69793 -17.59387 -17.52102 -17.00155 -16.78048 -16.69422 -16.10705 -15.52964 -15.35200 -15.31048 -14.91643 -14.80729 -14.53397 -14.03506 -13.88085 -13.80504 -13.57274 -13.46035 -13.18768 -13.13868 -12.56262 -12.39257 -12.36454 -12.04985 -11.93651 -11.68992 -11.53311 -11.42586 -11.36703 -11.23967 -10.87990 -10.72488 -10.62603 -10.34486 -10.18951 -10.03300 -9.43191 -9.29506 -9.13221 -9.01313 -8.87752 -8.41462 -7.75206 -5.90653 -3.83744 1.00327 1.19628 1.83080 2.81180 3.03339 3.36843 3.43418 3.48293 3.56605 3.65244 3.94956 4.02300 4.33708 4.38568 4.48962 4.54759 4.64083 4.74823 4.81069 4.87575 4.95605 5.01750 5.26775 5.37466 5.41625 5.48480 5.52204 5.53694 5.62710 5.69119 5.77047 5.81854 5.82908 5.90270 5.95436 6.19209 6.19742 6.28046 6.31112 6.34668 6.56612 6.73396 6.74560 6.99769 7.25900 7.29477 7.75395 7.80476 8.15094 8.60611 8.79568 9.23853 9.70561 11.23123 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012599 B = 0.003303 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.830860 B = 8475.774127 C = 9441.725214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.338 6.338 3 C 0.040 3.960 4 C 0.100 3.900 5 N -0.572 5.572 6 C 0.218 3.782 7 C -0.496 4.496 8 H 0.090 0.910 9 C 0.069 3.931 10 N -0.903 5.903 11 Si 0.865 3.135 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.267 1.267 15 C 0.524 3.476 16 O -0.523 6.523 17 C -0.185 4.185 18 H 0.134 0.866 19 C -0.135 4.135 20 C 0.127 3.873 21 H 0.107 0.893 22 C -0.092 4.092 23 C -0.086 4.086 24 C -0.119 4.119 25 C -0.114 4.114 26 C -0.123 4.123 27 C -0.103 4.103 28 O -0.331 6.331 29 C 0.499 3.501 30 O -0.439 6.439 31 H 0.030 0.970 32 H 0.087 0.913 33 H 0.025 0.975 34 H 0.047 0.953 35 H 0.038 0.962 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.037 0.963 39 H 0.026 0.974 40 H 0.260 0.740 41 H 0.118 0.882 42 H 0.104 0.896 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.091 21.700 -3.661 22.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.255 6.255 3 C -0.038 4.038 4 C -0.024 4.024 5 N -0.301 5.301 6 C 0.098 3.902 7 C -0.534 4.534 8 H 0.108 0.892 9 C -0.131 4.131 10 N -0.543 5.543 11 Si 0.692 3.308 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.192 1.192 15 C 0.308 3.692 16 O -0.400 6.400 17 C -0.209 4.209 18 H 0.152 0.848 19 C -0.173 4.173 20 C 0.072 3.928 21 H 0.124 0.876 22 C -0.093 4.093 23 C -0.104 4.104 24 C -0.137 4.137 25 C -0.132 4.132 26 C -0.141 4.141 27 C -0.121 4.121 28 O -0.248 6.248 29 C 0.338 3.662 30 O -0.322 6.322 31 H 0.049 0.951 32 H 0.105 0.895 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.070 0.930 41 H 0.136 0.864 42 H 0.122 0.878 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.713 21.018 -3.687 21.660 hybrid contribution 0.185 -0.495 0.286 0.601 sum 3.898 20.523 -3.401 21.165 Atomic orbital electron populations 1.22625 0.82632 1.02816 0.97967 1.88443 1.18045 1.24298 1.94698 1.22987 0.94842 0.87118 0.98864 1.21865 0.92367 0.99976 0.88156 1.47797 1.63748 1.09985 1.08609 1.19776 0.98484 0.74951 0.97009 1.21332 0.95857 0.91622 1.44610 0.89221 1.24771 0.95515 0.97470 0.95349 1.69876 1.26411 1.08518 1.49533 0.87034 0.85096 0.80301 0.78348 1.20375 1.21278 1.19194 1.19226 0.79209 0.86157 0.84647 1.90692 1.48014 1.72881 1.28363 1.22898 1.00534 0.97692 0.99732 0.84798 1.23169 1.01341 0.96561 0.96210 1.22560 0.87464 0.98566 0.84221 0.87551 1.19441 0.97895 0.97322 0.94605 1.21084 0.94518 0.98412 0.96394 1.21206 1.00193 0.98069 0.94260 1.21233 0.97032 0.95379 0.99535 1.21082 0.96441 0.99934 0.96681 1.20885 0.99958 0.96688 0.94617 1.87079 1.39660 1.62215 1.35812 1.22520 0.82633 0.76850 0.84175 1.90697 1.66057 1.60693 1.14721 0.95096 0.89466 0.95664 0.93527 0.94380 0.89223 0.88618 0.94508 0.95621 0.93048 0.86362 0.87771 0.85419 0.85683 0.85952 0.85772 0.85662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 11.01 101.05 1.11 1.73 16 2 O -0.34 -6.81 7.65 -35.23 -0.27 -7.08 16 3 C 0.04 0.64 6.03 37.16 0.22 0.86 16 4 C 0.10 1.69 5.46 -4.04 -0.02 1.67 16 5 N -0.57 -11.95 2.42 -175.05 -0.42 -12.37 16 6 C 0.22 5.43 4.24 -5.19 -0.02 5.41 16 7 C -0.50 -14.08 8.52 -34.44 -0.29 -14.37 16 8 H 0.09 2.75 6.61 -52.48 -0.35 2.40 16 9 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 10 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 11 Si 0.86 22.05 27.47 -169.99 -4.67 17.38 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 14 H -0.27 -6.69 6.54 56.52 0.37 -6.32 16 15 C 0.52 10.39 6.89 -10.99 -0.08 10.32 16 16 O -0.52 -12.25 15.02 5.55 0.08 -12.17 16 17 C -0.19 -2.61 2.44 -91.84 -0.22 -2.83 16 18 H 0.13 1.53 6.04 -51.93 -0.31 1.22 16 19 C -0.14 -1.57 6.22 -25.01 -0.16 -1.73 16 20 C 0.13 1.30 3.74 -26.94 -0.10 1.19 16 21 H 0.11 0.74 8.04 -51.93 -0.42 0.32 16 22 C -0.09 -0.97 4.99 -104.62 -0.52 -1.49 16 23 C -0.09 -1.01 9.26 -39.59 -0.37 -1.37 16 24 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 25 C -0.11 -0.98 10.05 -39.58 -0.40 -1.37 16 26 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 27 C -0.10 -0.87 9.68 -39.58 -0.38 -1.26 16 28 O -0.33 -4.46 10.09 -38.49 -0.39 -4.85 16 29 C 0.50 7.35 7.72 36.31 0.28 7.63 16 30 O -0.44 -7.37 15.63 -18.41 -0.29 -7.66 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.02 0.34 8.14 -51.94 -0.42 -0.08 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.04 0.57 6.91 -51.93 -0.36 0.21 16 36 H 0.09 1.52 7.83 -51.93 -0.41 1.12 16 37 H 0.10 1.42 4.36 -51.93 -0.23 1.19 16 38 H 0.04 0.99 6.53 -51.93 -0.34 0.65 16 39 H 0.03 0.62 7.28 -51.93 -0.38 0.25 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.12 1.70 6.36 -51.93 -0.33 1.37 16 42 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.13 1.66 7.76 -52.48 -0.41 1.25 16 44 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 45 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 46 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 47 H 0.13 0.73 8.05 -52.49 -0.42 0.31 16 LS Contribution 383.76 15.07 5.78 5.78 Total: -1.00 -36.12 383.76 -7.73 -43.85 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.50 Total: 0.85 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -1.84 Total: 3.33 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.35 Total: -39.45 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.86 Total: -31.75 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.12 -7.73 -43.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809691101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.580 kcal (2) G-P(sol) polarization free energy of solvation -36.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds