Wall clock time and date at job start Wed Apr 1 2020 04:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 119.99702 * 2 1 4 4 O 1.21283 * 120.00368 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00051 * 180.02562 * 3 2 1 6 6 O 1.42901 * 109.47359 * 179.97438 * 5 3 2 7 7 C 1.35899 * 116.99948 * 179.97438 * 6 5 3 8 8 C 1.38756 * 120.05699 * 0.02562 * 7 6 5 9 9 C 1.38117 * 119.94468 * 179.97438 * 8 7 6 10 10 C 1.38287 * 120.05457 * 359.74569 * 9 8 7 11 11 C 1.38244 * 120.11229 * 0.50298 * 10 9 8 12 12 C 1.50701 * 119.97182 * 179.76581 * 11 10 9 13 13 C 1.50701 * 109.47557 * 269.72836 * 12 11 10 14 14 O 1.20823 * 119.99533 * 0.02562 * 13 12 11 15 15 O 1.34224 * 120.00237 * 180.02562 * 13 12 11 16 16 C 1.45196 * 117.00254 * 184.98950 * 15 13 12 17 17 C 1.50700 * 112.84773 * 296.91750 * 16 15 13 18 18 H 1.08000 * 120.00148 * 113.93538 * 17 16 15 19 19 C 1.37881 * 120.00105 * 294.21318 * 17 16 15 20 20 N 1.31517 * 119.99751 * 6.27873 * 19 17 16 21 21 Si 1.86793 * 120.00219 * 186.27853 * 19 17 16 22 22 H 1.48502 * 109.46974 * 59.99748 * 21 19 17 23 23 H 1.48498 * 109.47491 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47269 * 300.00239 * 21 19 17 25 25 C 1.53783 * 113.69361 * 68.18346 * 16 15 13 26 26 C 1.53780 * 87.08003 * 89.13018 * 25 16 15 27 27 C 1.53772 * 87.08195 * 25.43278 * 26 25 16 28 28 C 1.38165 * 120.05488 * 359.49841 * 11 10 9 29 29 H 1.08996 * 109.47063 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47132 * 299.99933 * 1 2 3 31 31 H 1.08997 * 109.47575 * 60.00186 * 1 2 3 32 32 H 0.97000 * 119.99901 * 179.97438 * 2 1 3 33 33 H 1.09003 * 109.46744 * 59.99437 * 5 3 2 34 34 H 1.09000 * 109.46781 * 300.00015 * 5 3 2 35 35 H 1.08002 * 120.02392 * 359.95376 * 8 7 6 36 36 H 1.08001 * 119.97447 * 180.02562 * 9 8 7 37 37 H 1.08004 * 119.94605 * 180.27908 * 10 9 8 38 38 H 1.09005 * 109.46881 * 149.72502 * 12 11 10 39 39 H 1.09000 * 109.46965 * 29.73273 * 12 11 10 40 40 H 0.96996 * 119.99838 * 185.01388 * 20 19 17 41 41 H 1.08991 * 113.61686 * 203.67774 * 25 16 15 42 42 H 1.09004 * 113.61020 * 334.58552 * 25 16 15 43 43 H 1.09004 * 113.61349 * 270.88779 * 26 25 16 44 44 H 1.08996 * 113.69254 * 139.99414 * 26 25 16 45 45 H 1.09003 * 113.61909 * 220.02161 * 27 26 25 46 46 H 1.09000 * 113.69352 * 89.12730 * 27 26 25 47 47 H 1.08002 * 120.02697 * 180.22925 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1673 -0.0006 6 8 4.1222 2.5146 -0.0011 7 6 5.4694 2.6927 -0.0011 8 6 6.3158 1.5931 -0.0012 9 6 7.6847 1.7768 -0.0017 10 6 8.2119 3.0552 -0.0075 11 6 7.3709 4.1524 -0.0022 12 6 7.9489 5.5441 -0.0032 13 6 8.1420 6.0089 1.4172 14 8 7.8416 5.2842 2.3361 15 8 8.6478 7.2280 1.6616 16 6 8.9104 7.5668 3.0488 17 6 7.6614 7.5918 3.8917 18 1 7.5272 6.8658 4.6798 19 6 6.6873 8.5380 3.6528 20 7 6.7890 9.3387 2.6144 21 14 5.2235 8.6827 4.8040 22 1 5.7008 8.9973 6.1746 23 1 4.3272 9.7683 4.3312 24 1 4.4789 7.3980 4.8219 25 6 10.0600 6.7599 3.6751 26 6 11.0046 7.8639 3.1713 27 6 9.7954 8.8125 3.2219 28 6 6.0008 3.9740 -0.0017 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.9500 -0.8401 0.0004 33 1 4.0088 0.6536 -0.8908 34 1 4.0095 0.6533 0.8892 35 1 5.9044 0.5945 -0.0005 36 1 8.3439 0.9213 -0.0022 37 1 9.2826 3.1968 -0.0125 38 1 7.2662 6.2207 -0.5173 39 1 8.9100 5.5380 -0.5174 40 1 6.1435 10.0513 2.4865 41 1 10.0059 6.6939 4.7616 42 1 10.2250 5.7933 3.1989 43 1 11.3812 7.6899 2.1633 44 1 11.7924 8.1226 3.8787 45 1 9.7466 9.5031 2.3799 46 1 9.6678 9.3085 4.1840 47 1 5.3441 4.8314 -0.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810858971.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:13 Heat of formation + Delta-G solvation = -102.444862 kcal Electronic energy + Delta-G solvation = -30214.341967 eV Core-core repulsion = 25942.926999 eV Total energy + Delta-G solvation = -4271.414968 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.52439 -39.67254 -39.17754 -37.65459 -36.67372 -34.96138 -33.97903 -32.40548 -32.25430 -30.83042 -29.06409 -27.72965 -26.36347 -26.09377 -24.53898 -22.86267 -22.44229 -21.81268 -20.88918 -19.96908 -18.18729 -18.08777 -17.52040 -17.04056 -16.61561 -16.30778 -15.85010 -15.60682 -15.53962 -14.98351 -14.93642 -14.81065 -14.43600 -14.18547 -13.96153 -13.60144 -13.33215 -13.20064 -13.08025 -12.72358 -12.61048 -12.42699 -12.02321 -11.68050 -11.50857 -11.43869 -11.29350 -11.08503 -11.01119 -10.83372 -10.77430 -10.43761 -10.15856 -10.05683 -9.94614 -9.89012 -9.56956 -9.25315 -8.74010 -8.66989 -8.42825 -8.31679 -8.10592 -6.02145 -4.12100 1.40511 1.58048 2.24787 2.32353 3.35389 3.40241 3.44887 3.45888 3.54627 3.73733 4.24411 4.28311 4.45362 4.62609 4.73771 4.80700 4.84504 4.91409 5.12221 5.12585 5.30109 5.38371 5.41916 5.43944 5.61431 5.69050 5.73967 5.81786 5.86344 5.91782 5.97840 6.12931 6.23865 6.36045 6.44397 6.47633 6.50402 6.72388 6.80127 6.83701 6.85911 6.99649 7.20411 7.28532 7.41041 7.57155 7.82895 7.87552 7.99292 8.40796 8.90390 9.27786 9.57456 11.02702 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011320 B = 0.002834 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.913808 B = 9879.286447 C =11735.559269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.735 5.735 3 C 0.512 3.488 4 O -0.509 6.509 5 C 0.043 3.957 6 O -0.290 6.290 7 C 0.125 3.875 8 C -0.214 4.214 9 C -0.082 4.082 10 C -0.139 4.139 11 C -0.017 4.017 12 C -0.085 4.085 13 C 0.462 3.538 14 O -0.499 6.499 15 O -0.338 6.338 16 C 0.235 3.765 17 C -0.518 4.518 18 H 0.064 0.936 19 C 0.076 3.924 20 N -0.865 5.865 21 Si 0.888 3.112 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.152 4.152 26 C -0.152 4.152 27 C -0.096 4.096 28 C -0.126 4.126 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.403 0.597 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.262 0.738 41 H 0.080 0.920 42 H 0.049 0.951 43 H 0.068 0.932 44 H 0.052 0.948 45 H 0.062 0.938 46 H 0.082 0.918 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.169 -19.406 -9.221 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.390 5.390 3 C 0.297 3.703 4 O -0.382 6.382 5 C -0.036 4.036 6 O -0.203 6.203 7 C 0.081 3.919 8 C -0.233 4.233 9 C -0.100 4.100 10 C -0.157 4.157 11 C -0.017 4.017 12 C -0.123 4.123 13 C 0.303 3.697 14 O -0.387 6.387 15 O -0.254 6.254 16 C 0.201 3.799 17 C -0.555 4.555 18 H 0.082 0.918 19 C -0.129 4.129 20 N -0.502 5.502 21 Si 0.715 3.285 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.190 4.190 26 C -0.190 4.190 27 C -0.134 4.134 28 C -0.145 4.145 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.236 0.764 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.100 0.900 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.989 -18.519 -9.043 20.825 hybrid contribution -0.673 -0.621 0.734 1.174 sum -3.663 -19.140 -8.309 21.185 Atomic orbital electron populations 1.21563 0.78782 1.02400 1.02731 1.45605 1.08028 1.08223 1.77140 1.20190 0.89128 0.84171 0.76802 1.90795 1.69822 1.31019 1.46580 1.22371 0.92233 0.85213 1.03791 1.86167 1.19557 1.25497 1.89064 1.18879 0.81293 0.94301 0.97455 1.21091 0.94559 0.97293 1.10363 1.20793 0.94120 0.97019 0.98047 1.20912 0.99666 0.91958 1.03207 1.19164 0.92236 0.94306 0.96035 1.20381 1.03571 0.93503 0.94804 1.22601 0.75596 0.81046 0.90420 1.90596 1.46181 1.55638 1.46278 1.86394 1.73020 1.31388 1.34581 1.20587 0.92383 0.91119 0.75789 1.21190 1.02677 1.15476 1.16146 0.91778 1.25040 0.97542 0.95861 0.94507 1.70051 1.36641 1.17639 1.25854 0.86715 0.82607 0.77920 0.81235 1.20037 1.21164 1.19994 1.23440 0.97911 0.96742 1.00871 1.22993 0.96889 0.99161 0.99922 1.22726 0.92662 0.96558 1.01441 1.20303 0.94708 0.95042 1.04398 0.90365 0.91953 0.91992 0.76355 0.89026 0.88930 0.85924 0.85867 0.85918 0.87359 0.87723 0.92855 0.90149 0.93220 0.91367 0.92943 0.91882 0.89968 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 10.70 59.85 0.64 1.19 16 2 N -0.74 -5.06 5.71 -67.08 -0.38 -5.45 16 3 C 0.51 5.87 7.91 -10.98 -0.09 5.79 16 4 O -0.51 -8.64 16.50 -14.36 -0.24 -8.88 16 5 C 0.04 0.43 5.22 36.01 0.19 0.62 16 6 O -0.29 -4.50 9.67 -39.33 -0.38 -4.88 16 7 C 0.13 1.94 6.69 -39.22 -0.26 1.68 16 8 C -0.21 -2.66 9.04 -39.43 -0.36 -3.02 16 9 C -0.08 -1.01 10.04 -39.61 -0.40 -1.41 16 10 C -0.14 -1.99 9.70 -39.56 -0.38 -2.38 16 11 C -0.02 -0.28 4.37 -104.65 -0.46 -0.74 16 12 C -0.08 -1.46 5.94 -29.03 -0.17 -1.63 16 13 C 0.46 10.67 7.34 36.01 0.26 10.93 16 14 O -0.50 -12.94 14.26 -18.75 -0.27 -13.21 16 15 O -0.34 -8.50 9.86 -39.24 -0.39 -8.89 16 16 C 0.24 6.00 0.33 -90.96 -0.03 5.97 16 17 C -0.52 -14.73 7.17 -34.44 -0.25 -14.98 16 18 H 0.06 1.89 7.82 -52.49 -0.41 1.48 16 19 C 0.08 2.15 5.36 -17.82 -0.10 2.06 16 20 N -0.87 -24.93 12.80 55.43 0.71 -24.22 16 21 Si 0.89 22.25 29.55 -169.99 -5.02 17.23 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.27 -7.08 7.11 56.52 0.40 -6.68 16 25 C -0.15 -3.37 6.96 -25.92 -0.18 -3.55 16 26 C -0.15 -2.97 8.03 -25.92 -0.21 -3.18 16 27 C -0.10 -2.21 7.04 -25.92 -0.18 -2.39 16 28 C -0.13 -2.19 9.64 -39.43 -0.38 -2.57 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.40 1.22 8.83 -40.82 -0.36 0.86 16 33 H 0.09 0.62 7.66 -51.93 -0.40 0.22 16 34 H 0.09 0.72 7.66 -51.93 -0.40 0.32 16 35 H 0.12 1.07 6.30 -52.49 -0.33 0.74 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 38 H 0.11 1.78 8.09 -51.93 -0.42 1.36 16 39 H 0.10 1.46 8.08 -51.93 -0.42 1.04 16 40 H 0.26 7.22 8.32 -40.82 -0.34 6.88 16 41 H 0.08 1.75 8.09 -51.93 -0.42 1.33 16 42 H 0.05 1.09 7.55 -51.93 -0.39 0.70 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 46 H 0.08 1.89 8.09 -51.93 -0.42 1.47 16 47 H 0.13 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 400.68 15.07 6.04 6.04 Total: -1.00 -37.85 400.68 -9.19 -47.04 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.91 Total: 2.84 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -2.35 Total: -7.63 kcal Atomic # 7 Polarization: -29.99 SS G_CDS: 0.33 Total: -29.66 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -1.27 Total: -35.85 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.85 -9.19 -47.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810858971.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.407 kcal (2) G-P(sol) polarization free energy of solvation -37.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds