Wall clock time and date at job start Wed Apr 1 2020 04:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 119.99983 * 2 1 4 4 O 1.21596 * 119.99741 * 173.90875 * 3 2 1 5 5 C 1.47534 * 120.00219 * 353.90559 * 3 2 1 6 6 C 1.39665 * 120.19334 * 317.33726 * 5 3 2 7 7 C 1.37827 * 119.91359 * 179.97438 * 6 5 3 8 8 C 1.38566 * 120.32917 * 0.02806 * 7 6 5 9 9 C 1.38034 * 120.40166 * 359.97247 * 8 7 6 10 10 C 1.38825 * 120.06737 * 0.25901 * 9 8 7 11 11 O 1.35524 * 120.15940 * 179.74865 * 10 9 8 12 12 C 1.34806 * 117.00094 * 5.40295 * 11 10 9 13 13 H 1.08002 * 119.99867 * 5.32088 * 12 11 10 14 14 C 1.38701 * 120.00168 * 185.31696 * 12 11 10 15 15 N 1.31513 * 119.99824 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00079 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46738 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47097 * 119.99584 * 16 14 12 19 19 H 1.48493 * 109.47033 * 239.99920 * 16 14 12 20 20 C 1.46500 * 120.00284 * 179.97438 * 2 1 3 21 21 C 1.50704 * 109.47395 * 253.02929 * 20 2 1 22 22 O 1.20825 * 120.00025 * 144.99612 * 21 20 2 23 23 O 1.34225 * 119.99676 * 324.99507 * 21 20 2 24 24 C 1.52997 * 109.47390 * 133.02367 * 20 2 1 25 25 C 1.53003 * 109.47086 * 300.00415 * 24 20 2 26 26 C 1.53002 * 109.47200 * 299.99899 * 25 24 20 27 27 C 1.53005 * 109.46958 * 59.99870 * 26 25 24 28 28 C 1.52996 * 109.47028 * 300.00125 * 27 26 25 29 29 H 1.08999 * 109.47443 * 84.44137 * 1 2 3 30 30 H 1.08998 * 109.47381 * 204.44915 * 1 2 3 31 31 H 1.09005 * 109.47332 * 324.44274 * 1 2 3 32 32 H 1.07999 * 120.04367 * 359.95403 * 6 5 3 33 33 H 1.08003 * 119.83673 * 180.02562 * 7 6 5 34 34 H 1.08004 * 119.80140 * 180.02562 * 8 7 6 35 35 H 1.07999 * 119.96172 * 179.97438 * 9 8 7 36 36 H 0.97004 * 119.99862 * 179.97438 * 15 14 12 37 37 H 0.96697 * 116.99860 * 180.02562 * 23 21 20 38 38 H 1.08992 * 109.47115 * 60.00318 * 24 20 2 39 39 H 1.08994 * 109.47055 * 180.02562 * 24 20 2 40 40 H 1.08997 * 109.47325 * 179.97438 * 25 24 20 41 41 H 1.09002 * 109.47250 * 59.99885 * 25 24 20 42 42 H 1.09002 * 109.47007 * 300.00135 * 26 25 24 43 43 H 1.08992 * 109.47456 * 179.97438 * 26 25 24 44 44 H 1.09002 * 109.46940 * 180.02562 * 27 26 25 45 45 H 1.09002 * 109.47045 * 60.00288 * 27 26 25 46 46 H 1.09002 * 109.47340 * 299.99982 * 28 27 26 47 47 H 1.09002 * 109.46673 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3496 1.1701 0.1117 5 6 1.4074 2.4413 -0.1356 6 6 0.3678 2.5594 -1.0608 7 6 -0.3119 3.7522 -1.1824 8 6 0.0311 4.8368 -0.3911 9 6 1.0563 4.7349 0.5275 10 6 1.7552 3.5427 0.6603 11 8 2.7655 3.4421 1.5581 12 6 2.9700 4.4984 2.3703 13 1 2.2898 5.3371 2.3471 14 6 4.0538 4.5083 3.2358 15 7 4.8816 3.4868 3.2644 16 14 4.3367 5.9717 4.3617 17 1 3.2711 6.9815 4.1380 18 1 4.3035 5.5215 5.7764 19 1 5.6604 6.5757 4.0653 20 6 2.1975 -1.2687 0.0006 21 6 2.8079 -1.4958 1.3596 22 8 2.8872 -2.6154 1.8068 23 8 3.2633 -0.4542 2.0733 24 6 3.3048 -1.2187 -1.0540 25 6 2.6851 -0.9882 -2.4338 26 6 1.7230 -2.1327 -2.7584 27 6 0.6156 -2.1827 -1.7037 28 6 1.2354 -2.4132 -0.3241 29 1 -0.3634 0.0995 -1.0228 30 1 -0.3634 -0.9355 0.4253 31 1 -0.3634 0.8361 0.5976 32 1 0.0971 1.7172 -1.6804 33 1 -1.1159 3.8420 -1.8979 34 1 -0.5075 5.7674 -0.4932 35 1 1.3180 5.5848 1.1402 36 1 5.6398 3.4939 3.8694 37 1 3.6468 -0.6495 2.9392 38 1 3.9902 -0.4034 -0.8228 39 1 3.8495 -2.1628 -1.0538 40 1 3.4740 -0.9522 -3.1850 41 1 2.1401 -0.0442 -2.4342 42 1 2.2680 -3.0767 -2.7580 43 1 1.2811 -1.9683 -3.7411 44 1 -0.0696 -2.9983 -1.9348 45 1 0.0706 -1.2387 -1.7042 46 1 1.7804 -3.3572 -0.3236 47 1 0.4464 -2.4492 0.4272 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833686675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:51 Heat of formation + Delta-G solvation = -127.575075 kcal Electronic energy + Delta-G solvation = -33121.610220 eV Core-core repulsion = 28849.105523 eV Total energy + Delta-G solvation = -4272.504696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.49870 -41.01612 -40.10126 -38.61162 -37.97175 -37.11395 -35.57168 -34.29312 -32.71616 -32.05352 -30.90086 -30.53382 -27.53903 -27.34885 -25.53381 -24.38404 -23.82625 -23.17869 -22.16278 -21.40723 -19.94181 -19.83774 -19.11747 -18.74917 -18.12796 -17.55052 -17.26439 -16.54975 -16.40512 -16.29421 -15.86324 -15.74090 -15.42419 -15.36964 -15.07824 -14.91594 -14.71723 -14.28550 -14.21556 -13.85806 -13.65744 -13.54515 -13.44817 -13.24598 -13.11650 -13.03241 -12.80960 -12.60047 -12.55007 -12.44456 -12.22153 -12.10483 -12.03662 -11.98560 -11.42715 -11.30165 -11.22616 -11.15284 -10.81408 -10.29467 -9.74188 -9.58226 -8.98467 -8.42748 -6.12259 0.28165 0.77532 0.97944 1.32579 1.41970 1.50913 1.86342 1.99197 2.15928 2.29016 2.88156 3.22571 3.37283 3.49469 3.60866 3.86954 3.99227 4.12525 4.14586 4.18944 4.23260 4.30660 4.34555 4.43162 4.45031 4.53923 4.60700 4.66711 4.70988 4.84245 4.84995 5.01995 5.02920 5.08985 5.12099 5.17030 5.20557 5.23580 5.33019 5.33481 5.47249 5.51352 5.56777 5.63609 5.70294 5.75799 5.98591 6.22259 6.48537 6.88205 6.98123 7.46860 7.82576 8.77635 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012217 B = 0.004522 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.423176 B = 6191.028682 C = 7755.584872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.601 5.601 3 C 0.570 3.430 4 O -0.537 6.537 5 C -0.230 4.230 6 C -0.034 4.034 7 C -0.196 4.196 8 C -0.047 4.047 9 C -0.256 4.256 10 C 0.147 3.853 11 O -0.199 6.199 12 C -0.420 4.420 13 H 0.102 0.898 14 C -0.019 4.019 15 N -0.903 5.903 16 Si 1.016 2.984 17 H -0.248 1.248 18 H -0.270 1.270 19 H -0.272 1.272 20 C 0.201 3.799 21 C 0.466 3.534 22 O -0.547 6.547 23 O -0.496 6.496 24 C -0.137 4.137 25 C -0.105 4.105 26 C -0.114 4.114 27 C -0.125 4.125 28 C -0.106 4.106 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.149 0.851 35 H 0.118 0.882 36 H 0.269 0.731 37 H 0.408 0.592 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.616 -8.258 -12.102 20.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.337 5.337 3 C 0.361 3.639 4 O -0.413 6.413 5 C -0.234 4.234 6 C -0.052 4.052 7 C -0.214 4.214 8 C -0.065 4.065 9 C -0.275 4.275 10 C 0.093 3.907 11 O -0.103 6.103 12 C -0.496 4.496 13 H 0.120 0.880 14 C -0.218 4.218 15 N -0.539 5.539 16 Si 0.835 3.165 17 H -0.171 1.171 18 H -0.195 1.195 19 H -0.197 1.197 20 C 0.113 3.887 21 C 0.309 3.691 22 O -0.438 6.438 23 O -0.306 6.306 24 C -0.175 4.175 25 C -0.143 4.143 26 C -0.151 4.151 27 C -0.162 4.162 28 C -0.143 4.143 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.177 0.823 33 H 0.180 0.820 34 H 0.167 0.833 35 H 0.136 0.864 36 H 0.078 0.922 37 H 0.267 0.733 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.117 0.883 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.759 -8.706 -12.129 20.303 hybrid contribution 1.483 0.673 2.002 2.581 sum -12.276 -8.033 -10.127 17.827 Atomic orbital electron populations 1.22469 0.77434 1.04040 1.03763 1.47660 1.07795 1.02986 1.75278 1.18322 0.86584 0.83817 0.75183 1.90745 1.16002 1.86928 1.47674 1.19160 1.05005 0.92595 1.06648 1.21356 0.90545 0.99276 0.93999 1.21148 1.03951 0.92601 1.03698 1.21376 0.93369 0.99821 0.91957 1.21265 1.02613 0.97441 1.06215 1.19974 0.87949 0.93895 0.88877 1.84075 1.44045 1.40707 1.41490 1.21909 1.12645 0.98204 1.16817 0.88032 1.26586 0.94220 1.01591 0.99413 1.70289 1.14547 1.31819 1.37294 0.84580 0.79054 0.76076 0.76789 1.17093 1.19484 1.19687 1.20377 0.94267 0.87062 0.86947 1.24866 0.73982 0.81717 0.88522 1.90621 1.55972 1.25630 1.71605 1.84944 1.71201 1.39785 1.34631 1.22010 0.97136 1.03112 0.95235 1.21404 0.99396 0.99817 0.93638 1.21561 0.96297 0.97632 0.99621 1.21926 0.98218 1.04800 0.91206 1.21835 0.97427 0.94797 1.00267 0.88298 0.88765 0.91989 0.82342 0.81974 0.83307 0.86377 0.92248 0.73332 0.91660 0.90576 0.91296 0.92650 0.91436 0.89462 0.88290 0.89360 0.89463 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.36 7.05 127.77 0.90 2.26 16 2 N -0.60 -18.90 2.00 -807.15 -1.61 -20.51 16 3 C 0.57 24.35 5.43 86.69 0.47 24.82 16 4 O -0.54 -28.70 11.96 22.93 0.27 -28.43 16 5 C -0.23 -9.49 4.93 -19.99 -0.10 -9.58 16 6 C -0.03 -0.96 7.98 22.52 0.18 -0.78 16 7 C -0.20 -4.95 10.02 22.25 0.22 -4.73 16 8 C -0.05 -1.43 10.03 22.30 0.22 -1.20 16 9 C -0.26 -10.73 9.13 22.36 0.20 -10.52 16 10 C 0.15 7.33 6.63 22.91 0.15 7.48 16 11 O -0.20 -12.29 8.61 -6.22 -0.05 -12.35 16 12 C -0.42 -24.87 9.45 67.93 0.64 -24.23 16 13 H 0.10 5.48 5.29 -2.91 -0.02 5.46 16 14 C -0.02 -1.10 5.49 84.85 0.47 -0.64 16 15 N -0.90 -57.50 13.67 21.62 0.30 -57.20 16 16 Si 1.02 43.91 29.55 68.60 2.03 45.94 16 17 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 18 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 C 0.20 6.12 0.58 2.86 0.00 6.12 16 21 C 0.47 17.78 7.11 71.24 0.51 18.29 16 22 O -0.55 -21.32 16.85 21.97 0.37 -20.95 16 23 O -0.50 -22.04 10.81 -44.61 -0.48 -22.52 16 24 C -0.14 -4.25 4.31 30.59 0.13 -4.12 16 25 C -0.10 -2.44 5.74 30.60 0.18 -2.27 16 26 C -0.11 -1.72 5.92 30.60 0.18 -1.54 16 27 C -0.12 -1.70 5.53 30.59 0.17 -1.53 16 28 C -0.11 -2.20 3.72 30.59 0.11 -2.09 16 29 H 0.10 1.37 4.73 -2.39 -0.01 1.36 16 30 H 0.09 1.59 5.68 -2.39 -0.01 1.57 16 31 H 0.06 1.53 6.83 -2.38 -0.02 1.51 16 32 H 0.16 3.17 6.02 -2.91 -0.02 3.16 16 33 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 34 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 35 H 0.12 5.11 5.71 -2.91 -0.02 5.09 16 36 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 37 H 0.41 15.49 9.10 -74.06 -0.67 14.82 16 38 H 0.06 2.69 5.51 -2.39 -0.01 2.68 16 39 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.05 1.41 7.12 -2.39 -0.02 1.39 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.09 1.09 4.37 -2.39 -0.01 1.08 16 46 H 0.09 1.87 7.87 -2.39 -0.02 1.85 16 47 H 0.08 1.60 6.44 -2.39 -0.02 1.59 16 Total: -1.00 -87.51 363.62 5.83 -81.68 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: 0.37 Total: 38.62 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 4.64 Total: -4.28 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -1.32 Total: -77.72 kcal Atomic # 8 Polarization: -84.36 SS G_CDS: 0.11 Total: -84.25 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -87.51 5.83 -81.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833686675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.895 kcal (2) G-P(sol) polarization free energy of solvation -87.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds