Wall clock time and date at job start Wed Apr 1 2020 04:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35823 * 117.00214 * 2 1 4 4 C 1.38865 * 119.90098 * 359.72096 * 3 2 1 5 5 C 1.37747 * 120.16818 * 179.76632 * 4 3 2 6 6 C 1.39950 * 119.97812 * 0.51307 * 5 4 3 7 7 C 1.47000 * 120.09444 * 179.72304 * 6 5 4 8 8 C 1.34983 * 120.00171 * 0.02562 * 7 6 5 9 9 C 1.46260 * 119.99882 * 179.97438 * 8 7 6 10 10 O 1.21713 * 119.99997 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99544 * 180.02562 * 9 8 7 12 12 C 1.47021 * 125.65309 * 0.02562 * 11 9 8 13 13 C 1.54326 * 107.27453 * 181.02252 * 12 11 9 14 14 C 1.55159 * 102.93959 * 22.19408 * 13 12 11 15 15 O 1.42897 * 111.00464 * 82.57147 * 14 13 12 16 16 C 1.50701 * 111.00376 * 206.38565 * 14 13 12 17 17 H 1.08004 * 119.99937 * 359.97438 * 16 14 13 18 18 C 1.37876 * 120.00229 * 180.02562 * 16 14 13 19 19 N 1.31520 * 119.99690 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00321 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47090 * 89.99399 * 20 18 16 22 22 H 1.48497 * 109.46984 * 209.99404 * 20 18 16 23 23 H 1.48498 * 109.46913 * 329.99517 * 20 18 16 24 24 C 1.47428 * 125.64539 * 179.71904 * 11 9 8 25 25 C 1.39960 * 119.81071 * 359.74470 * 6 5 4 26 26 C 1.38090 * 119.82506 * 359.97438 * 25 6 5 27 27 O 1.36006 * 119.98984 * 179.97438 * 26 25 6 28 28 C 1.42899 * 116.99829 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47103 * 300.00581 * 1 2 3 30 30 H 1.09004 * 109.47054 * 60.00085 * 1 2 3 31 31 H 1.09000 * 109.47187 * 180.02562 * 1 2 3 32 32 H 1.07993 * 119.91057 * 0.02562 * 4 3 2 33 33 H 1.08008 * 120.00999 * 180.23479 * 5 4 3 34 34 H 1.08003 * 119.99913 * 180.02562 * 7 6 5 35 35 H 1.07992 * 120.00140 * 0.02562 * 8 7 6 36 36 H 1.08999 * 109.88113 * 300.44118 * 12 11 9 37 37 H 1.09004 * 109.88350 * 61.45101 * 12 11 9 38 38 H 1.08994 * 110.71727 * 140.55304 * 13 12 11 39 39 H 1.08996 * 110.72043 * 263.83365 * 13 12 11 40 40 H 0.96696 * 114.00212 * 180.02562 * 15 14 13 41 41 H 0.97001 * 119.99593 * 180.02562 * 19 18 16 42 42 H 1.09005 * 110.36625 * 274.74174 * 24 11 9 43 43 H 1.08997 * 110.36729 * 37.06424 * 24 11 9 44 44 H 1.08001 * 120.08951 * 180.02562 * 25 6 5 45 45 H 1.08995 * 109.46799 * 179.97438 * 28 27 26 46 46 H 1.08998 * 109.47103 * 300.00327 * 28 27 26 47 47 H 1.09008 * 109.46781 * 59.99685 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2875 2.3735 -0.0059 5 6 1.9071 3.6037 -0.0010 6 6 3.3044 3.6829 -0.0011 7 6 3.9683 4.9945 -0.0021 8 6 3.2302 6.1246 -0.0024 9 6 3.8908 7.4295 -0.0029 10 8 5.1061 7.4963 -0.0034 11 7 3.1538 8.5579 -0.0027 12 6 1.6850 8.6220 -0.0016 13 6 1.2915 10.1140 -0.0282 14 6 2.5558 10.7965 -0.6139 15 8 2.5656 10.7184 -2.0407 16 6 2.6595 12.2276 -0.1534 17 1 1.9047 12.6410 0.4992 18 6 3.7174 13.0097 -0.5660 19 7 4.6363 12.5065 -1.3612 20 14 3.8456 14.7839 0.0042 21 1 4.6189 14.8422 1.2706 22 1 4.5361 15.5891 -1.0350 23 1 2.4836 15.3307 0.2303 24 6 3.6870 9.9323 0.0027 25 6 4.0678 2.5099 -0.0006 26 6 3.4383 1.2808 0.0005 27 8 4.1768 0.1387 0.0004 28 6 5.5983 0.2854 -0.0002 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2092 2.3135 -0.0100 33 1 1.3148 4.5069 -0.0018 34 1 5.0467 5.0538 -0.0025 35 1 2.1519 6.0653 -0.0016 36 1 1.2914 8.1190 -0.8849 37 1 1.2939 8.1491 0.8993 38 1 0.4309 10.2743 -0.6776 39 1 1.0888 10.4774 0.9792 40 1 3.3372 11.1313 -2.4519 41 1 5.3807 13.0567 -1.6511 42 1 3.8992 10.2529 1.0228 43 1 4.5867 9.9927 -0.6096 44 1 5.1463 2.5658 -0.0002 45 1 6.0651 -0.6995 0.0003 46 1 5.9066 0.8337 -0.8903 47 1 5.9072 0.8341 0.8896 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844014675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:14 Heat of formation + Delta-G solvation = -108.413438 kcal Electronic energy + Delta-G solvation = -29656.402653 eV Core-core repulsion = 25384.728868 eV Total energy + Delta-G solvation = -4271.673785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.82763 -39.40398 -38.75390 -37.65719 -37.04145 -34.26596 -33.36682 -32.16053 -30.76766 -30.33225 -29.65630 -27.96686 -27.55838 -27.20848 -25.42214 -23.78245 -22.69471 -22.22253 -20.64770 -19.63082 -18.76856 -18.40448 -17.42607 -17.18315 -16.89887 -16.53644 -16.37119 -15.54342 -15.26450 -15.06815 -14.99642 -14.87870 -14.73518 -14.71922 -14.13749 -13.41170 -13.25342 -13.04098 -13.02807 -12.85825 -12.67694 -12.43739 -12.17649 -11.88870 -11.70341 -11.63587 -11.53058 -11.49306 -11.46045 -11.18321 -11.06434 -10.80387 -10.60865 -10.51094 -10.20194 -9.83198 -9.48166 -9.35910 -8.85685 -8.69837 -8.39270 -7.89866 -7.68594 -6.30514 -4.40101 0.47348 1.07179 1.99250 2.93817 2.97385 3.19228 3.27081 3.29557 3.45774 3.66730 3.86038 4.24628 4.42926 4.51567 4.63261 4.77934 4.83007 4.83348 4.90518 4.96164 5.01373 5.02208 5.15255 5.19211 5.23159 5.25459 5.35867 5.40714 5.64832 5.81024 5.82586 5.90285 5.99780 6.03081 6.09559 6.32199 6.43003 6.48857 6.54211 6.70794 6.73597 6.83887 7.00675 7.24893 7.26255 7.33035 7.72911 7.97698 8.23394 8.62783 8.75065 9.29715 9.44823 10.76788 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.023166 B = 0.001950 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.367015 B =14352.589373 C =15251.831218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.306 6.306 3 C 0.104 3.896 4 C -0.173 4.173 5 C -0.098 4.098 6 C -0.060 4.060 7 C -0.042 4.042 8 C -0.185 4.185 9 C 0.549 3.451 10 O -0.557 6.557 11 N -0.602 5.602 12 C 0.104 3.896 13 C -0.119 4.119 14 C 0.249 3.751 15 O -0.584 6.584 16 C -0.538 4.538 17 H 0.067 0.933 18 C 0.070 3.930 19 N -0.895 5.895 20 Si 0.905 3.095 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.092 3.908 25 C -0.153 4.153 26 C 0.097 3.903 27 O -0.308 6.308 28 C 0.024 3.976 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.126 0.874 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.386 0.614 41 H 0.271 0.729 42 H 0.061 0.939 43 H 0.082 0.918 44 H 0.141 0.859 45 H 0.100 0.900 46 H 0.056 0.944 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 -22.990 3.140 24.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.058 3.942 4 C -0.192 4.192 5 C -0.117 4.117 6 C -0.060 4.060 7 C -0.061 4.061 8 C -0.206 4.206 9 C 0.339 3.661 10 O -0.438 6.438 11 N -0.334 5.334 12 C -0.019 4.019 13 C -0.157 4.157 14 C 0.208 3.792 15 O -0.394 6.394 16 C -0.576 4.576 17 H 0.085 0.915 18 C -0.133 4.133 19 N -0.534 5.534 20 Si 0.732 3.268 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.029 4.029 25 C -0.172 4.172 26 C 0.052 3.948 27 O -0.222 6.222 28 C -0.071 4.071 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.144 0.856 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.239 0.761 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.101 0.899 44 H 0.158 0.842 45 H 0.119 0.881 46 H 0.075 0.925 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.934 -23.654 3.140 24.588 hybrid contribution 0.598 1.576 0.211 1.699 sum -5.336 -22.078 3.351 22.959 Atomic orbital electron populations 1.23097 0.78441 1.04037 1.01415 1.86128 1.21126 1.26002 1.88721 1.18422 0.89104 0.85233 1.01457 1.20997 1.00071 0.91236 1.06879 1.21170 0.93664 0.97457 0.99366 1.18740 0.92835 0.92435 1.02015 1.22193 1.00311 0.89829 0.93805 1.23114 1.00363 0.92535 1.04542 1.17859 0.86607 0.83818 0.77801 1.90779 1.13556 1.87450 1.52027 1.48630 1.07253 1.07188 1.70289 1.22027 0.80807 0.99198 0.99914 1.22635 0.99745 0.92027 1.01253 1.19627 0.87947 0.92083 0.79522 1.86058 1.50636 1.82316 1.20419 1.21501 1.09422 0.95774 1.30915 0.91453 1.25094 0.94798 0.99261 0.94151 1.69570 1.12575 1.37240 1.34014 0.86378 0.78364 0.83542 0.78479 1.20405 1.20975 1.19672 1.23339 1.00788 0.77746 1.01054 1.21258 1.00468 0.90264 1.05186 1.18077 0.88243 0.85992 1.02525 1.86164 1.18853 1.28002 1.89166 1.23101 0.78482 1.03950 1.01544 0.92571 0.92540 0.88183 0.84404 0.84793 0.84728 0.85621 0.92118 0.92629 0.90638 0.90432 0.76148 0.91855 0.92088 0.89932 0.84160 0.88150 0.92489 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.27 10.26 -33.86 -0.35 -3.61 16 3 C 0.10 1.16 6.71 -38.90 -0.26 0.90 16 4 C -0.17 -1.66 9.01 -39.53 -0.36 -2.02 16 5 C -0.10 -1.03 9.40 -39.12 -0.37 -1.40 16 6 C -0.06 -0.70 5.87 -105.06 -0.62 -1.32 16 7 C -0.04 -0.56 9.45 -37.19 -0.35 -0.92 16 8 C -0.18 -2.79 8.93 -37.52 -0.33 -3.12 16 9 C 0.55 11.05 7.77 -13.04 -0.10 10.95 16 10 O -0.56 -13.15 16.48 5.18 0.09 -13.06 16 11 N -0.60 -12.42 3.32 -172.07 -0.57 -12.99 16 12 C 0.10 1.78 6.05 -3.06 -0.02 1.76 16 13 C -0.12 -2.30 6.12 -24.89 -0.15 -2.45 16 14 C 0.25 5.98 0.89 -89.50 -0.08 5.90 16 15 O -0.58 -14.96 13.19 -35.23 -0.46 -15.42 16 16 C -0.54 -13.83 8.25 -34.44 -0.28 -14.11 16 17 H 0.07 1.69 7.76 -52.48 -0.41 1.28 16 18 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 19 N -0.89 -23.80 10.72 55.43 0.59 -23.20 16 20 Si 0.91 20.19 29.54 -169.99 -5.02 15.17 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 C 0.09 2.21 5.65 -2.41 -0.01 2.20 16 25 C -0.15 -1.67 8.78 -38.99 -0.34 -2.01 16 26 C 0.10 1.12 6.69 -39.19 -0.26 0.86 16 27 O -0.31 -3.45 10.27 -34.43 -0.35 -3.80 16 28 C 0.02 0.17 9.81 101.05 0.99 1.16 16 29 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 30 H 0.06 0.29 7.64 -51.93 -0.40 -0.11 16 31 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.14 0.95 6.27 -52.49 -0.33 0.62 16 33 H 0.13 1.21 6.15 -52.48 -0.32 0.88 16 34 H 0.13 1.89 7.52 -52.48 -0.39 1.50 16 35 H 0.13 1.55 5.37 -52.49 -0.28 1.27 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.08 1.40 8.01 -51.93 -0.42 0.99 16 40 H 0.39 10.28 6.93 45.56 0.32 10.60 16 41 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.06 1.49 8.04 -51.93 -0.42 1.08 16 43 H 0.08 2.24 7.64 -51.93 -0.40 1.84 16 44 H 0.14 1.27 6.28 -52.49 -0.33 0.94 16 45 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.36 7.66 -51.93 -0.40 -0.03 16 47 H 0.06 0.36 7.66 -51.92 -0.40 -0.04 16 LS Contribution 389.22 15.07 5.87 5.87 Total: -1.00 -32.22 389.22 -7.69 -39.91 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -5.82 Total: 11.91 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -1.65 Total: -0.76 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.02 Total: -36.20 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -1.08 Total: -35.90 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.22 -7.69 -39.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.502 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds