Wall clock time and date at job start Wed Apr 1 2020 04:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35823 * 117.00214 * 2 1 4 4 C 1.38865 * 119.90098 * 359.72096 * 3 2 1 5 5 C 1.37747 * 120.16818 * 179.76632 * 4 3 2 6 6 C 1.39950 * 119.97812 * 0.51307 * 5 4 3 7 7 C 1.47000 * 120.09444 * 179.72304 * 6 5 4 8 8 C 1.34983 * 120.00171 * 0.02562 * 7 6 5 9 9 C 1.46260 * 119.99882 * 179.97438 * 8 7 6 10 10 O 1.21713 * 119.99997 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99544 * 180.02562 * 9 8 7 12 12 C 1.47021 * 125.65309 * 0.02562 * 11 9 8 13 13 C 1.54326 * 107.27453 * 181.02252 * 12 11 9 14 14 C 1.55159 * 102.93959 * 22.19408 * 13 12 11 15 15 O 1.42897 * 111.00464 * 82.57147 * 14 13 12 16 16 C 1.50701 * 111.00376 * 206.38565 * 14 13 12 17 17 H 1.08004 * 119.99937 * 359.97438 * 16 14 13 18 18 C 1.37876 * 120.00229 * 180.02562 * 16 14 13 19 19 N 1.31520 * 119.99690 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00321 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47090 * 89.99399 * 20 18 16 22 22 H 1.48497 * 109.46984 * 209.99404 * 20 18 16 23 23 H 1.48498 * 109.46913 * 329.99517 * 20 18 16 24 24 C 1.47428 * 125.64539 * 179.71904 * 11 9 8 25 25 C 1.39960 * 119.81071 * 359.74470 * 6 5 4 26 26 C 1.38090 * 119.82506 * 359.97438 * 25 6 5 27 27 O 1.36006 * 119.98984 * 179.97438 * 26 25 6 28 28 C 1.42899 * 116.99829 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47103 * 300.00581 * 1 2 3 30 30 H 1.09004 * 109.47054 * 60.00085 * 1 2 3 31 31 H 1.09000 * 109.47187 * 180.02562 * 1 2 3 32 32 H 1.07993 * 119.91057 * 0.02562 * 4 3 2 33 33 H 1.08008 * 120.00999 * 180.23479 * 5 4 3 34 34 H 1.08003 * 119.99913 * 180.02562 * 7 6 5 35 35 H 1.07992 * 120.00140 * 0.02562 * 8 7 6 36 36 H 1.08999 * 109.88113 * 300.44118 * 12 11 9 37 37 H 1.09004 * 109.88350 * 61.45101 * 12 11 9 38 38 H 1.08994 * 110.71727 * 140.55304 * 13 12 11 39 39 H 1.08996 * 110.72043 * 263.83365 * 13 12 11 40 40 H 0.96696 * 114.00212 * 180.02562 * 15 14 13 41 41 H 0.97001 * 119.99593 * 180.02562 * 19 18 16 42 42 H 1.09005 * 110.36625 * 274.74174 * 24 11 9 43 43 H 1.08997 * 110.36729 * 37.06424 * 24 11 9 44 44 H 1.08001 * 120.08951 * 180.02562 * 25 6 5 45 45 H 1.08995 * 109.46799 * 179.97438 * 28 27 26 46 46 H 1.08998 * 109.47103 * 300.00327 * 28 27 26 47 47 H 1.09008 * 109.46781 * 59.99685 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2875 2.3735 -0.0059 5 6 1.9071 3.6037 -0.0010 6 6 3.3044 3.6829 -0.0011 7 6 3.9683 4.9945 -0.0021 8 6 3.2302 6.1246 -0.0024 9 6 3.8908 7.4295 -0.0029 10 8 5.1061 7.4963 -0.0034 11 7 3.1538 8.5579 -0.0027 12 6 1.6850 8.6220 -0.0016 13 6 1.2915 10.1140 -0.0282 14 6 2.5558 10.7965 -0.6139 15 8 2.5656 10.7184 -2.0407 16 6 2.6595 12.2276 -0.1534 17 1 1.9047 12.6410 0.4992 18 6 3.7174 13.0097 -0.5660 19 7 4.6363 12.5065 -1.3612 20 14 3.8456 14.7839 0.0042 21 1 4.6189 14.8422 1.2706 22 1 4.5361 15.5891 -1.0350 23 1 2.4836 15.3307 0.2303 24 6 3.6870 9.9323 0.0027 25 6 4.0678 2.5099 -0.0006 26 6 3.4383 1.2808 0.0005 27 8 4.1768 0.1387 0.0004 28 6 5.5983 0.2854 -0.0002 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2092 2.3135 -0.0100 33 1 1.3148 4.5069 -0.0018 34 1 5.0467 5.0538 -0.0025 35 1 2.1519 6.0653 -0.0016 36 1 1.2914 8.1190 -0.8849 37 1 1.2939 8.1491 0.8993 38 1 0.4309 10.2743 -0.6776 39 1 1.0888 10.4774 0.9792 40 1 3.3372 11.1313 -2.4519 41 1 5.3807 13.0567 -1.6511 42 1 3.8992 10.2529 1.0228 43 1 4.5867 9.9927 -0.6096 44 1 5.1463 2.5658 -0.0002 45 1 6.0651 -0.6995 0.0003 46 1 5.9066 0.8337 -0.8903 47 1 5.9072 0.8341 0.8896 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844014675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:13 Heat of formation + Delta-G solvation = -130.390778 kcal Electronic energy + Delta-G solvation = -29657.355662 eV Core-core repulsion = 25384.728868 eV Total energy + Delta-G solvation = -4272.626794 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.59351 -40.97658 -39.46261 -39.03271 -38.21339 -36.06754 -34.41211 -34.15581 -31.94020 -31.49813 -30.61408 -29.58461 -28.12186 -28.08924 -27.07124 -25.05384 -23.93267 -23.07298 -21.77929 -21.39523 -19.75851 -19.47933 -19.17162 -18.43919 -17.87905 -17.54743 -17.09607 -17.05678 -16.61918 -16.38095 -16.16723 -16.15779 -15.76763 -15.49511 -15.40640 -14.85551 -14.69304 -14.63632 -14.24869 -13.78070 -13.69717 -13.50015 -13.37145 -13.30467 -13.13153 -12.84994 -12.80147 -12.50353 -12.41111 -12.32035 -12.24674 -12.21011 -12.08873 -12.08255 -11.97623 -11.24480 -11.01217 -10.78936 -10.65095 -10.31341 -9.70145 -9.44035 -8.65226 -8.26232 -6.43181 -0.50995 0.30212 0.94622 1.41902 1.43849 1.53873 2.14035 2.27831 2.30839 2.32007 2.38856 2.78920 3.00042 3.46092 3.69346 3.81614 3.93710 3.97814 4.08109 4.14471 4.20130 4.24729 4.30117 4.38159 4.38288 4.42041 4.44877 4.44952 4.62081 4.69757 4.72929 4.75096 4.78644 4.94042 4.99727 5.03383 5.10682 5.18772 5.23942 5.36977 5.45169 5.51777 5.57578 5.58698 5.76486 6.04004 6.06291 6.55075 6.62494 6.72238 7.19161 7.29688 7.38505 8.79407 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.023166 B = 0.001950 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.367015 B =14352.589373 C =15251.831218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.328 6.328 3 C 0.099 3.901 4 C -0.170 4.170 5 C -0.092 4.092 6 C -0.082 4.082 7 C -0.013 4.013 8 C -0.202 4.202 9 C 0.541 3.459 10 O -0.608 6.608 11 N -0.609 5.609 12 C 0.104 3.896 13 C -0.113 4.113 14 C 0.231 3.769 15 O -0.590 6.590 16 C -0.555 4.555 17 H 0.072 0.928 18 C 0.022 3.978 19 N -0.920 5.920 20 Si 0.967 3.033 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.263 1.263 24 C 0.104 3.896 25 C -0.151 4.151 26 C 0.077 3.923 27 O -0.328 6.328 28 C 0.016 3.984 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.117 0.883 32 H 0.168 0.832 33 H 0.154 0.846 34 H 0.122 0.878 35 H 0.160 0.840 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.377 0.623 41 H 0.270 0.730 42 H 0.046 0.954 43 H 0.037 0.963 44 H 0.151 0.849 45 H 0.120 0.880 46 H 0.062 0.938 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.918 -24.499 3.906 26.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.242 6.242 3 C 0.053 3.947 4 C -0.189 4.189 5 C -0.110 4.110 6 C -0.083 4.083 7 C -0.033 4.033 8 C -0.223 4.223 9 C 0.334 3.666 10 O -0.493 6.493 11 N -0.339 5.339 12 C -0.017 4.017 13 C -0.151 4.151 14 C 0.190 3.810 15 O -0.399 6.399 16 C -0.593 4.593 17 H 0.090 0.910 18 C -0.178 4.178 19 N -0.560 5.560 20 Si 0.792 3.208 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.187 1.187 24 C -0.019 4.019 25 C -0.170 4.170 26 C 0.032 3.968 27 O -0.242 6.242 28 C -0.078 4.078 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.135 0.865 32 H 0.186 0.814 33 H 0.172 0.828 34 H 0.140 0.860 35 H 0.178 0.822 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.227 0.773 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.169 0.831 45 H 0.138 0.862 46 H 0.080 0.920 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.679 -25.184 3.915 26.924 hybrid contribution 1.446 1.843 -0.031 2.343 sum -7.233 -23.342 3.884 24.743 Atomic orbital electron populations 1.23421 0.76181 1.05716 1.02628 1.86108 1.23561 1.26029 1.88467 1.18756 0.89330 0.86067 1.00581 1.21295 1.01501 0.90227 1.05853 1.21436 0.93082 0.98623 0.97841 1.18674 0.93728 0.91365 1.04498 1.22248 0.99824 0.90606 0.90619 1.22882 1.01705 0.89676 1.07991 1.18710 0.86196 0.85257 0.76415 1.90742 1.15920 1.88261 1.54411 1.48692 1.08900 1.05884 1.70465 1.22250 0.78443 0.98092 1.02950 1.22647 0.97717 0.93054 1.01683 1.19908 0.90428 0.91984 0.78652 1.86046 1.50060 1.82197 1.21611 1.21861 1.09507 0.96955 1.30950 0.91014 1.25876 0.94574 1.03018 0.94319 1.69694 1.12957 1.38370 1.34954 0.85420 0.78523 0.79087 0.77794 1.20301 1.21006 1.18749 1.22886 0.99419 0.80484 0.99112 1.21388 1.01162 0.90044 1.04377 1.18317 0.88931 0.86222 1.03360 1.86136 1.20574 1.28244 1.89285 1.23347 0.76846 1.05474 1.02114 0.91225 0.91305 0.86505 0.81428 0.82826 0.86036 0.82224 0.90239 0.88335 0.89492 0.89149 0.77279 0.92048 0.93607 0.94387 0.83137 0.86199 0.91961 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.25 16 2 O -0.33 -6.33 10.26 -77.54 -0.80 -7.13 16 3 C 0.10 2.00 6.71 22.71 0.15 2.15 16 4 C -0.17 -2.70 9.01 22.30 0.20 -2.50 16 5 C -0.09 -1.62 9.40 22.57 0.21 -1.41 16 6 C -0.08 -1.78 5.87 -20.15 -0.12 -1.90 16 7 C -0.01 -0.34 9.45 23.82 0.23 -0.11 16 8 C -0.20 -5.77 8.93 23.61 0.21 -5.56 16 9 C 0.54 21.93 7.77 86.33 0.67 22.60 16 10 O -0.61 -30.03 16.48 -4.39 -0.07 -30.10 16 11 N -0.61 -24.99 3.32 -816.52 -2.71 -27.71 16 12 C 0.10 3.28 6.05 86.73 0.52 3.81 16 13 C -0.11 -4.16 6.12 31.78 0.19 -3.97 16 14 C 0.23 11.17 0.89 -10.07 -0.01 11.16 16 15 O -0.59 -30.80 13.19 -148.98 -1.97 -32.76 16 16 C -0.55 -28.72 8.25 25.60 0.21 -28.51 16 17 H 0.07 3.56 7.76 -2.91 -0.02 3.53 16 18 C 0.02 1.17 5.30 84.65 0.45 1.62 16 19 N -0.92 -50.68 10.72 21.45 0.23 -50.45 16 20 Si 0.97 41.77 29.54 68.60 2.03 43.80 16 21 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 23 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 24 C 0.10 5.19 5.65 86.93 0.49 5.68 16 25 C -0.15 -3.13 8.78 22.65 0.20 -2.93 16 26 C 0.08 1.69 6.69 22.52 0.15 1.84 16 27 O -0.33 -7.07 10.27 -79.58 -0.82 -7.89 16 28 C 0.02 0.22 9.81 113.37 1.11 1.33 16 29 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 30 H 0.07 0.47 7.64 -2.38 -0.02 0.45 16 31 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.17 1.56 6.27 -2.91 -0.02 1.54 16 33 H 0.15 2.06 6.15 -2.91 -0.02 2.04 16 34 H 0.12 3.47 7.52 -2.91 -0.02 3.45 16 35 H 0.16 3.34 5.37 -2.91 -0.02 3.32 16 36 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 39 H 0.09 3.06 8.01 -2.39 -0.02 3.04 16 40 H 0.38 20.91 6.93 -74.06 -0.51 20.40 16 41 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 42 H 0.05 2.34 8.04 -2.38 -0.02 2.33 16 43 H 0.04 2.19 7.64 -2.39 -0.02 2.17 16 44 H 0.15 2.62 6.28 -2.91 -0.02 2.60 16 45 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.06 0.74 7.66 -2.39 -0.02 0.73 16 47 H 0.06 0.74 7.66 -2.38 -0.02 0.72 16 Total: -1.00 -73.51 389.22 2.37 -71.14 By element: Atomic # 1 Polarization: 36.05 SS G_CDS: 0.50 Total: 36.54 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 5.99 Total: 4.55 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -2.48 Total: -78.16 kcal Atomic # 8 Polarization: -74.22 SS G_CDS: -3.65 Total: -77.87 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -73.51 2.37 -71.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.255 kcal (2) G-P(sol) polarization free energy of solvation -73.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds