Wall clock time and date at job start Wed Apr 1 2020 05:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36000 * 117.00279 * 2 1 4 4 C 1.38028 * 119.98827 * 0.02562 * 3 2 1 5 5 C 1.40038 * 119.82603 * 179.97438 * 4 3 2 6 6 C 1.46859 * 120.09967 * 179.97438 * 5 4 3 7 7 O 1.21293 * 119.99983 * 359.97438 * 6 5 4 8 8 C 1.40007 * 119.80418 * 0.02562 * 5 4 3 9 9 C 1.37675 * 119.97605 * 359.72264 * 8 5 4 10 10 C 1.38917 * 120.17868 * 0.54762 * 9 8 5 11 11 O 1.35748 * 119.90772 * 179.72006 * 10 9 8 12 12 C 1.42904 * 116.99577 * 359.73362 * 11 10 9 13 13 C 1.50705 * 109.46768 * 179.97438 * 12 11 10 14 14 O 1.21277 * 120.00344 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99819 * 179.97438 * 13 12 11 16 16 C 1.46926 * 120.63044 * 359.97438 * 15 13 12 17 17 C 1.53192 * 108.77820 * 126.36870 * 16 15 13 18 18 C 1.53043 * 109.30860 * 54.63429 * 17 16 15 19 19 C 1.53037 * 109.53919 * 298.63563 * 18 17 16 20 20 H 1.08997 * 109.49928 * 301.41588 * 19 18 17 21 21 C 1.50701 * 109.52364 * 181.33412 * 19 18 17 22 22 H 1.07996 * 120.00165 * 0.15112 * 21 19 18 23 23 C 1.37881 * 119.99606 * 180.14200 * 21 19 18 24 24 N 1.31509 * 120.00180 * 0.02562 * 23 21 19 25 25 Si 1.86803 * 119.99401 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47538 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46744 * 120.00410 * 25 23 21 28 28 H 1.48501 * 109.47378 * 239.99944 * 25 23 21 29 29 C 1.46925 * 120.63041 * 179.97438 * 15 13 12 30 30 H 1.08996 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46908 * 300.00549 * 1 2 3 32 32 H 1.09003 * 109.46932 * 60.00154 * 1 2 3 33 33 H 1.08005 * 120.08895 * 359.96433 * 4 3 2 34 34 H 1.08001 * 120.00225 * 180.02562 * 6 5 4 35 35 H 1.07999 * 120.01195 * 180.02562 * 8 5 4 36 36 H 1.08008 * 119.91696 * 180.27282 * 9 8 5 37 37 H 1.08996 * 109.47077 * 59.99633 * 12 11 10 38 38 H 1.09003 * 109.47036 * 299.99563 * 12 11 10 39 39 H 1.09006 * 109.58406 * 246.15786 * 16 15 13 40 40 H 1.09002 * 109.59019 * 6.57775 * 16 15 13 41 41 H 1.09001 * 109.49595 * 174.58602 * 17 16 15 42 42 H 1.09000 * 109.49611 * 294.68450 * 17 16 15 43 43 H 1.08997 * 109.45405 * 178.61356 * 18 17 16 44 44 H 1.09002 * 109.44862 * 58.64978 * 18 17 16 45 45 H 0.97007 * 119.99876 * 179.97438 * 24 23 21 46 46 H 1.08998 * 109.58340 * 353.41744 * 29 15 13 47 47 H 1.09003 * 109.58494 * 113.70309 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2945 2.3692 0.0005 5 6 1.9339 3.6151 0.0011 6 6 1.1397 4.8505 0.0011 7 8 -0.0718 4.7926 0.0001 8 6 3.3325 3.6796 0.0005 9 6 4.0746 2.5200 0.0052 10 6 3.4395 1.2845 -0.0009 11 8 4.1766 0.1445 -0.0020 12 6 5.5981 0.2912 -0.0025 13 6 6.2435 -1.0706 -0.0030 14 8 5.5542 -2.0684 -0.0025 15 7 7.5869 -1.1796 -0.0040 16 6 8.4353 0.0200 -0.0052 17 6 9.4231 -0.0735 1.1619 18 6 10.1967 -1.3906 1.0659 19 6 9.2210 -2.5655 1.1636 20 1 8.6765 -2.5089 2.1061 21 6 9.9864 -3.8622 1.1019 22 1 11.0619 -3.8503 1.0053 23 6 9.3134 -5.0637 1.1689 24 7 8.0036 -5.0782 1.2861 25 14 10.2621 -6.6711 1.0917 26 1 11.7130 -6.3837 0.9599 27 1 10.0226 -7.4474 2.3349 28 1 9.8048 -7.4601 -0.0803 29 6 8.2308 -2.5002 -0.0040 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.2159 2.3142 0.0004 34 1 1.6345 5.8105 0.0011 35 1 3.8290 4.6387 0.0014 36 1 5.1534 2.5708 0.0093 37 1 5.9071 0.8391 0.8877 38 1 5.9064 0.8402 -0.8923 39 1 8.9845 0.0782 -0.9450 40 1 7.8135 0.9075 0.1126 41 1 10.1210 0.7626 1.1157 42 1 8.8768 -0.0403 2.1045 43 1 10.9176 -1.4484 1.8813 44 1 10.7228 -1.4337 0.1122 45 1 7.5301 -5.9236 1.3329 46 1 7.4740 -3.2756 0.1146 47 1 8.7613 -2.6481 -0.9447 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855258945.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:51 Heat of formation + Delta-G solvation = -111.177710 kcal Electronic energy + Delta-G solvation = -30215.518838 eV Core-core repulsion = 25943.725185 eV Total energy + Delta-G solvation = -4271.793653 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.98197 -39.74008 -39.13039 -38.47131 -36.95219 -36.45048 -33.49002 -31.89106 -31.02286 -30.75729 -30.00022 -28.42252 -27.64001 -25.13113 -24.78037 -24.12673 -22.59069 -21.91208 -21.35899 -19.91047 -18.92797 -18.39478 -17.82075 -17.06166 -16.59702 -16.48096 -16.01205 -15.88157 -15.70173 -15.39390 -15.33747 -14.87331 -14.55563 -14.51366 -14.18862 -14.05263 -13.79427 -13.32672 -13.17589 -12.96574 -12.71897 -12.67990 -12.47667 -12.13317 -11.95449 -11.71296 -11.56545 -11.33884 -11.19205 -11.05341 -10.96247 -10.54643 -10.45726 -10.28878 -10.15222 -9.96100 -9.34377 -9.17656 -9.14069 -8.92879 -8.47264 -8.12662 -7.85081 -6.02494 -4.11812 0.33279 0.99686 2.13365 2.63339 3.04152 3.06151 3.28794 3.37306 3.39860 3.42872 3.77054 3.90081 4.37029 4.41057 4.53550 4.68632 4.77053 4.81809 4.91264 4.95732 4.99336 5.01534 5.08580 5.15603 5.27521 5.28101 5.35917 5.38745 5.54963 5.69937 5.79467 5.87311 5.89858 6.06204 6.21734 6.22777 6.51808 6.58729 6.73847 6.82332 6.90698 7.06440 7.08971 7.18296 7.31991 7.59132 7.81728 7.94157 8.13404 8.34303 8.73473 8.92762 9.54360 11.02772 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018664 B = 0.002283 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.854326 B =12264.175841 C =13583.841310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.298 6.298 3 C 0.087 3.913 4 C -0.116 4.116 5 C -0.204 4.204 6 C 0.387 3.613 7 O -0.468 6.468 8 C -0.056 4.056 9 C -0.197 4.197 10 C 0.146 3.854 11 O -0.268 6.268 12 C 0.037 3.963 13 C 0.507 3.493 14 O -0.509 6.509 15 N -0.603 5.603 16 C 0.106 3.894 17 C -0.135 4.135 18 C -0.111 4.111 19 C 0.040 3.960 20 H 0.029 0.971 21 C -0.522 4.522 22 H 0.059 0.941 23 C 0.062 3.938 24 N -0.879 5.879 25 Si 0.892 3.108 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.283 1.283 29 C 0.113 3.887 30 H 0.103 0.897 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.145 0.855 34 H 0.106 0.894 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.264 0.736 46 H 0.124 0.876 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.537 21.091 -3.501 23.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.211 6.211 3 C 0.041 3.959 4 C -0.135 4.135 5 C -0.205 4.205 6 C 0.247 3.753 7 O -0.342 6.342 8 C -0.075 4.075 9 C -0.216 4.216 10 C 0.098 3.902 11 O -0.179 6.179 12 C -0.041 4.041 13 C 0.291 3.709 14 O -0.383 6.383 15 N -0.338 5.338 16 C -0.017 4.017 17 C -0.173 4.173 18 C -0.149 4.149 19 C 0.020 3.980 20 H 0.047 0.953 21 C -0.560 4.560 22 H 0.078 0.922 23 C -0.141 4.141 24 N -0.517 5.517 25 Si 0.720 3.280 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.209 1.209 29 C -0.006 4.006 30 H 0.122 0.878 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.162 0.838 34 H 0.122 0.878 35 H 0.156 0.844 36 H 0.161 0.839 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.142 0.858 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.700 19.951 -3.493 22.458 hybrid contribution 0.673 -0.540 -0.013 0.862 sum -9.028 19.411 -3.506 21.693 Atomic orbital electron populations 1.23120 0.78376 1.04382 1.01135 1.86304 1.21083 1.24977 1.88752 1.18156 0.89085 0.85658 1.02997 1.21284 1.00568 0.90461 1.01140 1.20570 0.94613 0.95246 1.10108 1.23918 0.88720 0.92701 0.69955 1.90525 1.17588 1.90673 1.35457 1.21058 0.92187 0.98345 0.95906 1.21088 1.00936 0.90811 1.08738 1.18757 0.88616 0.86363 0.96419 1.86294 1.17551 1.27200 1.86871 1.22777 0.79501 0.98652 1.03186 1.19746 0.82963 0.89477 0.78716 1.90785 1.61724 1.37960 1.47865 1.48459 1.03863 1.09330 1.72163 1.21696 0.93500 0.87090 0.99426 1.21958 0.98015 0.99337 0.97964 1.21628 0.98528 0.94024 1.00691 1.18987 0.92130 0.92343 0.94492 0.95262 1.21096 0.93359 0.90043 1.51536 0.92246 1.25070 0.94908 0.99335 0.94778 1.69888 1.06454 1.26522 1.48797 0.86532 0.80064 0.83696 0.77693 1.19786 1.20993 1.20942 1.22373 0.98344 0.81164 0.98733 0.87820 0.92659 0.92688 0.83765 0.87811 0.84418 0.83905 0.89122 0.89243 0.91563 0.91579 0.92033 0.92048 0.92883 0.93076 0.92595 0.85825 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.30 -4.27 10.27 -34.41 -0.35 -4.62 16 3 C 0.09 1.14 6.69 -39.19 -0.26 0.88 16 4 C -0.12 -1.25 8.58 -38.98 -0.33 -1.58 16 5 C -0.20 -1.81 5.87 -105.07 -0.62 -2.42 16 6 C 0.39 2.95 11.44 34.22 0.39 3.34 16 7 O -0.47 -5.37 17.16 5.55 0.10 -5.28 16 8 C -0.06 -0.41 9.78 -39.12 -0.38 -0.79 16 9 C -0.20 -1.82 9.01 -39.54 -0.36 -2.17 16 10 C 0.15 1.93 6.71 -38.86 -0.26 1.67 16 11 O -0.27 -4.40 9.43 -46.63 -0.44 -4.84 16 12 C 0.04 0.52 3.56 36.01 0.13 0.65 16 13 C 0.51 9.93 7.78 -10.98 -0.09 9.84 16 14 O -0.51 -12.80 15.91 -14.35 -0.23 -13.03 16 15 N -0.60 -11.41 2.97 -172.74 -0.51 -11.92 16 16 C 0.11 1.45 6.34 -3.71 -0.02 1.43 16 17 C -0.13 -1.95 6.08 -26.61 -0.16 -2.11 16 18 C -0.11 -2.08 5.11 -26.69 -0.14 -2.21 16 19 C 0.04 0.95 2.25 -91.63 -0.21 0.74 16 20 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 21 C -0.52 -13.84 8.57 -34.44 -0.29 -14.14 16 22 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 23 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 24 N -0.88 -25.54 11.39 55.43 0.63 -24.91 16 25 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 C 0.11 2.67 5.40 -3.69 -0.02 2.65 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 32 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 33 H 0.14 1.44 5.87 -52.48 -0.31 1.13 16 34 H 0.11 0.34 8.06 -52.49 -0.42 -0.08 16 35 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 36 H 0.14 0.96 6.27 -52.48 -0.33 0.63 16 37 H 0.09 1.00 7.19 -51.93 -0.37 0.62 16 38 H 0.09 0.92 7.46 -51.93 -0.39 0.54 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.65 5.93 -51.93 -0.31 0.34 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.12 3.46 5.12 -51.93 -0.27 3.20 16 47 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 386.74 15.07 5.83 5.83 Total: -1.00 -36.00 386.74 -8.26 -44.26 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -6.54 Total: -0.13 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.72 Total: -1.41 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.12 Total: -36.83 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.93 Total: -27.78 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.00 -8.26 -44.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855258945.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.918 kcal (2) G-P(sol) polarization free energy of solvation -35.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds