Wall clock time and date at job start Wed Apr 1 2020 04:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34225 * 116.99855 * 2 1 4 4 O 1.20834 * 120.00232 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00264 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47512 * 180.02562 * 5 3 2 7 7 N 1.46498 * 109.46955 * 180.02562 * 6 5 3 8 8 C 1.37097 * 120.00137 * 264.11847 * 7 6 5 9 9 H 1.07997 * 119.99639 * 146.23378 * 8 7 6 10 10 C 1.38948 * 119.99806 * 326.24205 * 8 7 6 11 11 N 1.31418 * 119.99941 * 156.36883 * 10 8 7 12 12 Si 1.86795 * 120.00175 * 336.36500 * 10 8 7 13 13 H 1.48499 * 109.46950 * 93.73459 * 12 10 8 14 14 H 1.48503 * 109.47369 * 213.73228 * 12 10 8 15 15 H 1.48503 * 109.46974 * 333.73222 * 12 10 8 16 16 C 1.34776 * 120.00200 * 84.12644 * 7 6 5 17 17 O 1.21292 * 119.99834 * 5.40727 * 16 7 6 18 18 C 1.50695 * 120.00372 * 185.40953 * 16 7 6 19 19 C 1.50698 * 115.54963 * 66.54125 * 18 16 7 20 20 C 1.38171 * 120.03068 * 220.26047 * 19 18 16 21 21 C 1.38237 * 120.05588 * 179.97438 * 20 19 18 22 22 C 1.38281 * 120.11687 * 359.97428 * 21 20 19 23 23 C 1.38125 * 120.05625 * 0.02562 * 22 21 20 24 24 C 1.38708 * 120.02909 * 40.21598 * 19 18 16 25 25 O 1.35902 * 120.05682 * 0.04175 * 24 19 18 26 26 C 1.42903 * 117.00240 * 177.28218 * 25 24 19 27 27 C 1.52999 * 117.52150 * 212.24087 * 18 16 7 28 28 C 1.52998 * 59.99979 * 107.48325 * 27 18 16 29 29 H 1.08999 * 109.47587 * 59.99488 * 1 2 3 30 30 H 1.09000 * 109.46905 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46959 * 299.99402 * 1 2 3 32 32 H 1.08997 * 109.46825 * 60.00024 * 5 3 2 33 33 H 1.09007 * 109.47131 * 300.00672 * 5 3 2 34 34 H 1.08997 * 109.47328 * 59.99998 * 6 5 3 35 35 H 1.09001 * 109.46917 * 299.99928 * 6 5 3 36 36 H 0.96994 * 119.99967 * 185.00883 * 11 10 8 37 37 H 1.08001 * 119.96831 * 359.97438 * 20 19 18 38 38 H 1.08011 * 119.94105 * 179.97438 * 21 20 19 39 39 H 1.07998 * 119.97525 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.03355 * 179.71869 * 23 22 21 41 41 H 1.09000 * 109.47163 * 302.88147 * 26 25 24 42 42 H 1.09003 * 109.46790 * 62.88073 * 26 25 24 43 43 H 1.09001 * 109.46961 * 182.88140 * 26 25 24 44 44 H 1.09000 * 117.50421 * 214.96979 * 27 18 16 45 45 H 1.08995 * 117.49780 * 359.97438 * 27 18 16 46 46 H 1.09007 * 117.49930 * 252.51362 * 28 27 18 47 47 H 1.09000 * 117.50176 * 107.49095 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8188 -0.0010 8 6 6.1423 2.9752 1.1796 9 1 7.1111 2.5161 1.3101 10 6 5.5841 3.7243 2.2082 11 7 5.9584 3.5159 3.4506 12 14 4.3018 5.0274 1.8251 13 1 2.9444 4.4400 1.9572 14 1 4.4463 6.1588 2.7761 15 1 4.4955 5.5195 0.4374 16 6 6.1413 2.7356 -1.1627 17 8 5.5393 2.6962 -2.2149 18 6 7.6476 2.6917 -1.1543 19 6 8.2584 1.4573 -0.5427 20 6 9.3794 1.5645 0.2579 21 6 9.9399 0.4326 0.8197 22 6 9.3802 -0.8095 0.5827 23 6 8.2596 -0.9222 -0.2169 24 6 7.6952 0.2125 -0.7821 25 8 6.5926 0.1043 -1.5691 26 6 6.1019 -1.2141 -1.8208 27 6 8.3801 3.3311 -2.3356 28 6 8.3920 4.0152 -0.9671 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 3.9556 0.7810 -0.8908 33 1 3.9564 0.7805 0.8891 34 1 3.6108 3.2357 0.8906 35 1 3.6100 3.2368 -0.8893 36 1 5.5177 3.9865 4.1752 37 1 9.8182 2.5335 0.4449 38 1 10.8165 0.5185 1.4449 39 1 9.8197 -1.6922 1.0231 40 1 7.8255 -1.8929 -0.4054 41 1 6.8915 -1.8158 -2.2708 42 1 5.7878 -1.6702 -0.8820 43 1 5.2523 -1.1617 -2.5016 44 1 9.3038 2.8591 -2.6704 45 1 7.7725 3.7834 -3.1194 46 1 7.7922 4.9178 -0.8504 47 1 9.3235 3.9931 -0.4015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871340626.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:13 Heat of formation + Delta-G solvation = -79.831166 kcal Electronic energy + Delta-G solvation = -32779.348848 eV Core-core repulsion = 28508.914483 eV Total energy + Delta-G solvation = -4270.434365 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.34555 -40.09496 -38.72843 -37.20726 -36.38746 -35.77787 -34.79353 -32.18051 -30.88696 -30.33012 -29.72670 -27.66915 -26.92899 -25.17920 -24.70361 -23.20631 -22.19072 -21.37651 -20.92494 -20.34892 -18.70063 -17.85581 -17.47902 -16.79014 -16.44961 -16.35287 -16.03379 -15.55775 -15.33580 -15.19021 -14.88901 -14.42045 -14.12144 -14.07021 -13.77487 -13.42521 -13.20860 -13.05901 -12.75183 -12.58983 -12.36405 -12.27105 -12.12466 -11.90380 -11.70565 -11.63330 -11.22115 -11.08121 -10.95801 -10.81363 -10.71841 -10.64910 -10.56943 -10.23207 -10.16759 -9.98736 -9.79975 -9.75999 -9.14818 -8.56480 -8.33260 -7.82108 -7.62306 -6.39587 -3.95975 1.69940 1.85744 2.52511 2.91773 3.13601 3.28502 3.36349 3.60584 3.81394 4.04529 4.16309 4.25003 4.68552 4.94909 4.98235 5.12966 5.14708 5.16936 5.22873 5.32434 5.38093 5.40572 5.48820 5.53753 5.56221 5.58431 5.67332 5.69631 5.73260 5.80033 5.90309 6.00696 6.09176 6.14141 6.29336 6.38301 6.42857 6.46347 6.55451 6.65884 6.67395 6.73158 6.80699 6.94686 7.17597 7.35469 7.82906 8.02621 8.13051 8.37203 9.01894 9.42376 9.73501 10.68294 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009247 B = 0.005509 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.396214 B = 5081.752869 C = 6376.305793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.467 3.533 4 O -0.511 6.511 5 C -0.121 4.121 6 C 0.117 3.883 7 N -0.458 5.458 8 C -0.339 4.339 9 H 0.115 0.885 10 C 0.068 3.932 11 N -0.858 5.858 12 Si 0.862 3.138 13 H -0.270 1.270 14 H -0.289 1.289 15 H -0.261 1.261 16 C 0.532 3.468 17 O -0.583 6.583 18 C -0.074 4.074 19 C -0.049 4.049 20 C -0.073 4.073 21 C -0.156 4.156 22 C -0.090 4.090 23 C -0.211 4.211 24 C 0.139 3.861 25 O -0.294 6.294 26 C 0.028 3.972 27 C -0.152 4.152 28 C -0.148 4.148 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.274 0.726 37 H 0.130 0.870 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.068 -9.135 -5.505 10.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.310 3.690 4 O -0.398 6.398 5 C -0.159 4.159 6 C -0.007 4.007 7 N -0.177 5.177 8 C -0.466 4.466 9 H 0.132 0.868 10 C -0.139 4.139 11 N -0.494 5.494 12 Si 0.690 3.310 13 H -0.197 1.197 14 H -0.216 1.216 15 H -0.186 1.186 16 C 0.321 3.679 17 O -0.466 6.466 18 C -0.077 4.077 19 C -0.050 4.050 20 C -0.091 4.091 21 C -0.174 4.174 22 C -0.108 4.108 23 C -0.229 4.229 24 C 0.093 3.907 25 O -0.206 6.206 26 C -0.067 4.067 27 C -0.190 4.190 28 C -0.185 4.185 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.147 0.853 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.117 0.883 46 H 0.117 0.883 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.436 -8.604 -5.906 10.535 hybrid contribution -1.023 0.321 0.420 1.151 sum 0.413 -8.283 -5.486 9.943 Atomic orbital electron populations 1.23196 0.77174 1.03181 1.02393 1.86533 1.22880 1.34089 1.84491 1.24084 0.92372 0.80998 0.71566 1.90647 1.67376 1.36327 1.45463 1.21811 0.85810 1.02034 1.06292 1.21372 0.83324 0.93079 1.02898 1.43565 1.03251 1.64357 1.06560 1.19211 1.06158 1.32007 0.89254 0.86770 1.25257 0.97127 0.96610 0.94879 1.69712 1.41050 1.40122 0.98515 0.87212 0.81736 0.82606 0.79478 1.19678 1.21570 1.18561 1.18988 0.86875 0.78974 0.83105 1.90521 1.69690 1.54875 1.31537 1.19520 0.92495 0.92667 1.03011 1.18109 0.96134 0.90321 1.00458 1.20858 0.94472 0.98896 0.94841 1.20906 1.01575 0.92449 1.02482 1.20790 0.95270 0.97458 0.97280 1.21091 1.00338 0.97343 1.04170 1.18806 0.87036 0.93404 0.91410 1.86294 1.40969 1.28996 1.64354 1.22995 0.99249 0.83456 1.01036 1.23014 1.01130 1.02879 0.91932 1.22969 1.01545 0.95414 0.98575 0.92125 0.88458 0.92093 0.87345 0.87079 0.90325 0.90692 0.91585 0.85263 0.86284 0.86461 0.85977 0.93246 0.92949 0.88678 0.88910 0.88272 0.88338 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.77 10.57 -39.24 -0.41 -6.19 16 3 C 0.47 8.83 7.96 36.01 0.29 9.12 16 4 O -0.51 -10.92 15.73 -18.76 -0.30 -11.21 16 5 C -0.12 -2.39 6.09 -27.89 -0.17 -2.56 16 6 C 0.12 2.71 3.31 -4.04 -0.01 2.70 16 7 N -0.46 -10.96 2.25 -114.82 -0.26 -11.22 16 8 C -0.34 -8.62 8.97 -14.93 -0.13 -8.76 16 9 H 0.11 3.02 5.75 -52.49 -0.30 2.72 16 10 C 0.07 1.79 5.28 -17.47 -0.09 1.70 16 11 N -0.86 -23.39 13.95 55.50 0.77 -22.62 16 12 Si 0.86 21.07 25.03 -169.99 -4.25 16.82 16 13 H -0.27 -6.65 6.57 56.52 0.37 -6.28 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.26 -6.51 7.11 56.52 0.40 -6.11 16 16 C 0.53 12.34 4.96 -10.99 -0.05 12.29 16 17 O -0.58 -14.56 16.13 0.42 0.01 -14.55 16 18 C -0.07 -1.48 1.21 -156.82 -0.19 -1.67 16 19 C -0.05 -0.92 3.92 -104.47 -0.41 -1.33 16 20 C -0.07 -1.21 8.93 -39.61 -0.35 -1.57 16 21 C -0.16 -2.31 10.04 -39.57 -0.40 -2.71 16 22 C -0.09 -1.28 10.04 -39.61 -0.40 -1.68 16 23 C -0.21 -3.23 9.04 -39.43 -0.36 -3.59 16 24 C 0.14 2.52 6.53 -39.21 -0.26 2.26 16 25 O -0.29 -5.38 8.19 -24.56 -0.20 -5.58 16 26 C 0.03 0.37 9.81 101.05 0.99 1.36 16 27 C -0.15 -2.60 9.76 -26.73 -0.26 -2.86 16 28 C -0.15 -2.61 9.36 -26.73 -0.25 -2.86 16 29 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 32 H 0.11 2.08 8.14 -51.93 -0.42 1.65 16 33 H 0.11 2.17 8.14 -51.93 -0.42 1.75 16 34 H 0.08 1.93 3.08 -51.93 -0.16 1.77 16 35 H 0.07 1.80 7.49 -51.93 -0.39 1.41 16 36 H 0.27 7.07 8.32 -40.82 -0.34 6.73 16 37 H 0.13 1.97 5.97 -52.49 -0.31 1.66 16 38 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 40 H 0.12 1.56 6.31 -52.49 -0.33 1.23 16 41 H 0.05 0.55 7.61 -51.93 -0.40 0.15 16 42 H 0.05 0.64 7.71 -51.93 -0.40 0.24 16 43 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.10 1.75 8.02 -51.93 -0.42 1.33 16 46 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 47 H 0.10 1.51 6.13 -51.93 -0.32 1.19 16 LS Contribution 386.02 15.07 5.82 5.82 Total: -1.00 -32.29 386.02 -6.23 -38.53 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -6.42 Total: 8.86 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -0.99 Total: 1.34 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.52 Total: -33.84 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.90 Total: -37.53 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.25 Total: 16.82 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.29 -6.23 -38.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871340626.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.305 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds