Wall clock time and date at job start Wed Apr 1 2020 04:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34225 * 116.99855 * 2 1 4 4 O 1.20834 * 120.00232 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00264 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47512 * 180.02562 * 5 3 2 7 7 N 1.46498 * 109.46955 * 180.02562 * 6 5 3 8 8 C 1.37097 * 120.00137 * 264.11847 * 7 6 5 9 9 H 1.07997 * 119.99639 * 146.23378 * 8 7 6 10 10 C 1.38948 * 119.99806 * 326.24205 * 8 7 6 11 11 N 1.31418 * 119.99941 * 156.36883 * 10 8 7 12 12 Si 1.86795 * 120.00175 * 336.36500 * 10 8 7 13 13 H 1.48499 * 109.46950 * 93.73459 * 12 10 8 14 14 H 1.48503 * 109.47369 * 213.73228 * 12 10 8 15 15 H 1.48503 * 109.46974 * 333.73222 * 12 10 8 16 16 C 1.34776 * 120.00200 * 84.12644 * 7 6 5 17 17 O 1.21292 * 119.99834 * 5.40727 * 16 7 6 18 18 C 1.50695 * 120.00372 * 185.40953 * 16 7 6 19 19 C 1.50698 * 115.54963 * 66.54125 * 18 16 7 20 20 C 1.38171 * 120.03068 * 220.26047 * 19 18 16 21 21 C 1.38237 * 120.05588 * 179.97438 * 20 19 18 22 22 C 1.38281 * 120.11687 * 359.97428 * 21 20 19 23 23 C 1.38125 * 120.05625 * 0.02562 * 22 21 20 24 24 C 1.38708 * 120.02909 * 40.21598 * 19 18 16 25 25 O 1.35902 * 120.05682 * 0.04175 * 24 19 18 26 26 C 1.42903 * 117.00240 * 177.28218 * 25 24 19 27 27 C 1.52999 * 117.52150 * 212.24087 * 18 16 7 28 28 C 1.52998 * 59.99979 * 107.48325 * 27 18 16 29 29 H 1.08999 * 109.47587 * 59.99488 * 1 2 3 30 30 H 1.09000 * 109.46905 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46959 * 299.99402 * 1 2 3 32 32 H 1.08997 * 109.46825 * 60.00024 * 5 3 2 33 33 H 1.09007 * 109.47131 * 300.00672 * 5 3 2 34 34 H 1.08997 * 109.47328 * 59.99998 * 6 5 3 35 35 H 1.09001 * 109.46917 * 299.99928 * 6 5 3 36 36 H 0.96994 * 119.99967 * 185.00883 * 11 10 8 37 37 H 1.08001 * 119.96831 * 359.97438 * 20 19 18 38 38 H 1.08011 * 119.94105 * 179.97438 * 21 20 19 39 39 H 1.07998 * 119.97525 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.03355 * 179.71869 * 23 22 21 41 41 H 1.09000 * 109.47163 * 302.88147 * 26 25 24 42 42 H 1.09003 * 109.46790 * 62.88073 * 26 25 24 43 43 H 1.09001 * 109.46961 * 182.88140 * 26 25 24 44 44 H 1.09000 * 117.50421 * 214.96979 * 27 18 16 45 45 H 1.08995 * 117.49780 * 359.97438 * 27 18 16 46 46 H 1.09007 * 117.49930 * 252.51362 * 28 27 18 47 47 H 1.09000 * 117.50176 * 107.49095 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8188 -0.0010 8 6 6.1423 2.9752 1.1796 9 1 7.1111 2.5161 1.3101 10 6 5.5841 3.7243 2.2082 11 7 5.9584 3.5159 3.4506 12 14 4.3018 5.0274 1.8251 13 1 2.9444 4.4400 1.9572 14 1 4.4463 6.1588 2.7761 15 1 4.4955 5.5195 0.4374 16 6 6.1413 2.7356 -1.1627 17 8 5.5393 2.6962 -2.2149 18 6 7.6476 2.6917 -1.1543 19 6 8.2584 1.4573 -0.5427 20 6 9.3794 1.5645 0.2579 21 6 9.9399 0.4326 0.8197 22 6 9.3802 -0.8095 0.5827 23 6 8.2596 -0.9222 -0.2169 24 6 7.6952 0.2125 -0.7821 25 8 6.5926 0.1043 -1.5691 26 6 6.1019 -1.2141 -1.8208 27 6 8.3801 3.3311 -2.3356 28 6 8.3920 4.0152 -0.9671 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 3.9556 0.7810 -0.8908 33 1 3.9564 0.7805 0.8891 34 1 3.6108 3.2357 0.8906 35 1 3.6100 3.2368 -0.8893 36 1 5.5177 3.9865 4.1752 37 1 9.8182 2.5335 0.4449 38 1 10.8165 0.5185 1.4449 39 1 9.8197 -1.6922 1.0231 40 1 7.8255 -1.8929 -0.4054 41 1 6.8915 -1.8158 -2.2708 42 1 5.7878 -1.6702 -0.8820 43 1 5.2523 -1.1617 -2.5016 44 1 9.3038 2.8591 -2.6704 45 1 7.7725 3.7834 -3.1194 46 1 7.7922 4.9178 -0.8504 47 1 9.3235 3.9931 -0.4015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871340626.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:12 Heat of formation + Delta-G solvation = -98.099410 kcal Electronic energy + Delta-G solvation = -32780.141018 eV Core-core repulsion = 28508.914483 eV Total energy + Delta-G solvation = -4271.226535 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.82315 -41.48074 -40.27487 -38.52792 -37.80468 -37.25383 -36.59808 -34.13044 -32.60925 -31.54692 -30.89473 -28.85917 -27.99860 -26.98404 -26.39587 -24.63651 -23.49324 -22.72273 -22.28395 -21.88649 -20.44852 -19.29812 -18.94180 -18.28391 -18.09642 -17.81738 -17.56872 -16.80899 -16.79107 -16.57282 -16.44942 -15.91486 -15.69402 -15.29433 -15.26276 -14.97719 -14.55854 -14.45154 -14.37467 -14.22292 -13.97030 -13.70855 -13.52650 -13.37472 -13.06417 -12.90853 -12.84395 -12.68236 -12.42472 -12.26877 -12.10852 -11.90642 -11.85298 -11.83166 -11.78577 -11.67110 -11.42979 -11.23591 -11.05278 -10.36967 -9.78430 -9.54526 -8.86263 -8.43587 -5.98737 0.50800 0.66575 1.00885 1.15648 1.27769 1.36321 1.53130 1.93181 2.15848 2.53940 2.59502 2.83391 3.00734 3.25380 3.66410 3.67699 3.80911 3.98284 4.04666 4.07313 4.17930 4.24908 4.26325 4.27153 4.32123 4.35893 4.38765 4.44591 4.54648 4.60375 4.63973 4.66766 4.74281 4.78317 4.78887 4.86209 4.97184 5.07423 5.20671 5.21704 5.29102 5.42043 5.53995 5.63084 5.74858 6.03914 6.17296 6.35555 6.57686 6.66625 7.02948 7.49658 7.84482 8.67369 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009247 B = 0.005509 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.396214 B = 5081.752869 C = 6376.305793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.358 6.358 3 C 0.474 3.526 4 O -0.540 6.540 5 C -0.110 4.110 6 C 0.115 3.885 7 N -0.467 5.467 8 C -0.321 4.321 9 H 0.106 0.894 10 C 0.041 3.959 11 N -0.887 5.887 12 Si 0.899 3.101 13 H -0.276 1.276 14 H -0.283 1.283 15 H -0.275 1.275 16 C 0.533 3.467 17 O -0.607 6.607 18 C -0.098 4.098 19 C -0.075 4.075 20 C -0.085 4.085 21 C -0.158 4.158 22 C -0.087 4.087 23 C -0.213 4.213 24 C 0.116 3.884 25 O -0.326 6.326 26 C 0.021 3.979 27 C -0.135 4.135 28 C -0.144 4.144 29 H 0.062 0.938 30 H 0.140 0.860 31 H 0.059 0.941 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.277 0.723 37 H 0.136 0.864 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.101 0.899 44 H 0.119 0.881 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.953 -11.208 -5.421 12.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.318 3.682 4 O -0.430 6.430 5 C -0.148 4.148 6 C -0.009 4.009 7 N -0.187 5.187 8 C -0.449 4.449 9 H 0.124 0.876 10 C -0.163 4.163 11 N -0.525 5.525 12 Si 0.728 3.272 13 H -0.203 1.203 14 H -0.209 1.209 15 H -0.200 1.200 16 C 0.324 3.676 17 O -0.491 6.491 18 C -0.101 4.101 19 C -0.076 4.076 20 C -0.103 4.103 21 C -0.176 4.176 22 C -0.105 4.105 23 C -0.231 4.231 24 C 0.070 3.930 25 O -0.240 6.240 26 C -0.074 4.074 27 C -0.172 4.172 28 C -0.181 4.181 29 H 0.081 0.919 30 H 0.158 0.842 31 H 0.078 0.922 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.154 0.846 38 H 0.164 0.836 39 H 0.169 0.831 40 H 0.163 0.837 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.119 0.881 44 H 0.137 0.863 45 H 0.106 0.894 46 H 0.100 0.900 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.316 -10.697 -5.824 12.398 hybrid contribution -1.346 0.851 0.307 1.622 sum 0.970 -9.846 -5.518 11.328 Atomic orbital electron populations 1.23623 0.74530 1.06056 1.02534 1.86502 1.25309 1.31949 1.83638 1.23768 0.91937 0.81483 0.70982 1.90637 1.67860 1.37489 1.47028 1.21563 0.86997 0.99639 1.06633 1.21281 0.83180 0.95128 1.01286 1.43649 1.03449 1.65067 1.06543 1.19124 1.05687 1.30766 0.89328 0.87632 1.25531 0.98286 0.97554 0.94946 1.69734 1.42420 1.41395 0.98934 0.86636 0.80487 0.81643 0.78476 1.20293 1.20914 1.19990 1.19568 0.88473 0.77293 0.82304 1.90487 1.70804 1.55634 1.32216 1.19560 0.90395 0.94561 1.05576 1.18195 0.97427 0.89992 1.01989 1.21052 0.94288 1.00101 0.94823 1.21281 1.02170 0.92101 1.02074 1.21243 0.94510 0.98546 0.96202 1.21413 1.00489 0.97563 1.03641 1.19086 0.87484 0.94143 0.92253 1.86233 1.41408 1.31617 1.64724 1.23226 1.00153 0.82136 1.01843 1.23054 1.01404 1.01714 0.91072 1.23034 1.01894 0.93727 0.99406 0.91881 0.84212 0.92169 0.86802 0.86836 0.91786 0.92256 0.91302 0.84589 0.83609 0.83067 0.83656 0.91116 0.92077 0.88057 0.86266 0.89360 0.89990 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.56 113.37 1.20 1.75 16 2 O -0.36 -10.85 10.57 -51.37 -0.54 -11.39 16 3 C 0.47 17.85 7.96 71.24 0.57 18.42 16 4 O -0.54 -23.27 15.73 21.94 0.35 -22.93 16 5 C -0.11 -4.37 6.09 29.85 0.18 -4.19 16 6 C 0.11 5.45 3.31 86.38 0.29 5.74 16 7 N -0.47 -22.78 2.25 -635.56 -1.43 -24.21 16 8 C -0.32 -16.52 8.97 84.04 0.75 -15.77 16 9 H 0.11 5.63 5.75 -2.91 -0.02 5.61 16 10 C 0.04 2.17 5.28 84.92 0.45 2.62 16 11 N -0.89 -48.55 13.95 21.66 0.30 -48.25 16 12 Si 0.90 44.29 25.03 68.60 1.72 46.01 16 13 H -0.28 -13.73 6.57 99.48 0.65 -13.08 16 14 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 15 H -0.27 -13.97 7.11 99.48 0.71 -13.27 16 16 C 0.53 25.19 4.96 87.66 0.44 25.62 16 17 O -0.61 -31.04 16.13 1.84 0.03 -31.01 16 18 C -0.10 -3.91 1.21 -53.68 -0.06 -3.98 16 19 C -0.07 -2.75 3.92 -19.77 -0.08 -2.83 16 20 C -0.08 -2.69 8.93 22.25 0.20 -2.50 16 21 C -0.16 -4.24 10.04 22.28 0.22 -4.02 16 22 C -0.09 -2.19 10.04 22.25 0.22 -1.97 16 23 C -0.21 -6.00 9.04 22.37 0.20 -5.80 16 24 C 0.12 4.07 6.53 22.51 0.15 4.21 16 25 O -0.33 -11.80 8.19 -87.55 -0.72 -12.52 16 26 C 0.02 0.53 9.81 113.37 1.11 1.64 16 27 C -0.14 -4.54 9.76 30.59 0.30 -4.24 16 28 C -0.14 -5.02 9.36 30.59 0.29 -4.73 16 29 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 30 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 32 H 0.11 4.40 8.14 -2.39 -0.02 4.38 16 33 H 0.11 4.45 8.14 -2.38 -0.02 4.43 16 34 H 0.06 3.22 3.08 -2.39 -0.01 3.21 16 35 H 0.06 2.95 7.49 -2.39 -0.02 2.93 16 36 H 0.28 14.35 8.32 -92.71 -0.77 13.58 16 37 H 0.14 3.95 5.97 -2.91 -0.02 3.93 16 38 H 0.15 3.04 8.06 -2.90 -0.02 3.02 16 39 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 40 H 0.15 3.27 6.31 -2.91 -0.02 3.25 16 41 H 0.07 1.43 7.61 -2.39 -0.02 1.41 16 42 H 0.06 1.39 7.71 -2.39 -0.02 1.37 16 43 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 45 H 0.09 3.13 8.02 -2.39 -0.02 3.11 16 46 H 0.08 3.10 8.14 -2.38 -0.02 3.08 16 47 H 0.12 3.62 6.13 -2.39 -0.01 3.60 16 Total: -1.00 -70.75 386.02 7.07 -63.68 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.95 Total: 30.64 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 6.42 Total: 9.98 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: -1.13 Total: -72.46 kcal Atomic # 8 Polarization: -76.96 SS G_CDS: -0.88 Total: -77.85 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.72 Total: 46.01 kcal Total: -70.75 7.07 -63.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871340626.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.419 kcal (2) G-P(sol) polarization free energy of solvation -70.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds