Wall clock time and date at job start Wed Apr 1 2020 04:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 116.99937 * 2 1 4 4 O 1.20826 * 119.99735 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00095 * 180.28016 * 3 2 1 6 6 C 1.53002 * 109.46939 * 179.72638 * 5 3 2 7 7 N 1.46502 * 109.46559 * 187.02887 * 6 5 3 8 8 C 1.37098 * 120.00281 * 329.19711 * 7 6 5 9 9 H 1.08005 * 119.99715 * 10.18578 * 8 7 6 10 10 C 1.38946 * 120.00322 * 190.18453 * 8 7 6 11 11 N 1.31406 * 120.00077 * 41.07655 * 10 8 7 12 12 Si 1.86801 * 119.99881 * 221.07950 * 10 8 7 13 13 H 1.48493 * 109.47228 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47254 * 119.99821 * 12 10 8 15 15 H 1.48503 * 109.46820 * 239.99662 * 12 10 8 16 16 C 1.34775 * 119.99824 * 149.20833 * 7 6 5 17 17 O 1.21296 * 119.99879 * 185.38023 * 16 7 6 18 18 C 1.50699 * 120.00380 * 5.37207 * 16 7 6 19 19 H 1.09007 * 110.26592 * 32.73931 * 18 16 7 20 20 C 1.54333 * 110.30434 * 154.81127 * 18 16 7 21 21 C 1.54347 * 102.39845 * 92.55948 * 20 18 16 22 22 C 1.51389 * 105.16673 * 26.36334 * 21 20 18 23 23 C 1.38411 * 130.33239 * 162.82340 * 22 21 20 24 24 C 1.38602 * 120.16982 * 179.97438 * 23 22 21 25 25 O 1.35899 * 120.09491 * 179.97438 * 24 23 22 26 26 C 1.42891 * 117.00207 * 179.97438 * 25 24 23 27 27 C 1.38751 * 119.81277 * 0.02562 * 24 23 22 28 28 C 1.38003 * 119.88065 * 0.02562 * 27 24 23 29 29 C 1.38260 * 109.75759 * 342.80458 * 22 21 20 30 30 H 1.09002 * 109.47462 * 60.00142 * 1 2 3 31 31 H 1.09001 * 109.46972 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47174 * 299.99616 * 1 2 3 33 33 H 1.09001 * 109.46676 * 299.71979 * 5 3 2 34 34 H 1.09003 * 109.47206 * 59.72142 * 5 3 2 35 35 H 1.09002 * 109.46932 * 307.01959 * 6 5 3 36 36 H 1.08994 * 109.47454 * 67.02684 * 6 5 3 37 37 H 0.97003 * 120.00286 * 184.92581 * 11 10 8 38 38 H 1.08998 * 110.82375 * 210.78321 * 20 18 16 39 39 H 1.09000 * 110.82391 * 334.13635 * 20 18 16 40 40 H 1.08994 * 110.30462 * 145.28550 * 21 20 18 41 41 H 1.08997 * 110.30127 * 267.44864 * 21 20 18 42 42 H 1.07998 * 119.91950 * 359.97438 * 23 22 21 43 43 H 1.09001 * 109.47763 * 300.00341 * 26 25 24 44 44 H 1.09006 * 109.46985 * 60.00383 * 26 25 24 45 45 H 1.09002 * 109.47163 * 180.02562 * 26 25 24 46 46 H 1.08005 * 120.05937 * 179.97438 * 27 24 23 47 47 H 1.08002 * 119.85236 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0064 6 6 4.0000 2.7422 -0.0119 7 7 5.4523 2.8213 -0.1871 8 6 6.2565 1.8210 0.2949 9 1 5.8181 0.9018 0.6545 10 6 7.6354 1.9897 0.3207 11 7 8.1495 3.1443 0.6805 12 14 8.7586 0.5753 -0.1563 13 1 7.9378 -0.6080 -0.5184 14 1 9.5916 0.9750 -1.3187 15 1 9.6391 0.2344 0.9899 16 6 5.9979 3.8776 -0.8219 17 8 7.1884 3.8973 -1.0535 18 6 5.1290 5.0341 -1.2442 19 1 4.3133 5.1725 -0.5344 20 6 5.9694 6.3240 -1.3523 21 6 6.3848 6.3253 -2.8388 22 6 5.3041 5.5415 -3.5527 23 6 4.9796 5.4830 -4.8970 24 6 3.9331 4.6824 -5.3268 25 8 3.6154 4.6265 -6.6469 26 6 2.5255 3.7796 -7.0167 27 6 3.2099 3.9388 -4.4051 28 6 3.5352 4.0001 -3.0654 29 6 4.5823 4.7994 -2.6364 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.9596 0.7831 0.8833 34 1 3.9524 0.7784 -0.8967 35 1 3.5062 3.2639 -0.8318 36 1 3.7223 3.2067 0.9341 37 1 9.1079 3.2853 0.6303 38 1 5.3656 7.2007 -1.1180 39 1 6.8433 6.2726 -0.7028 40 1 6.4256 7.3459 -3.2192 41 1 7.3508 5.8359 -2.9620 42 1 5.5433 6.0628 -5.6129 43 1 2.7478 2.7531 -6.7253 44 1 1.6190 4.1126 -6.5112 45 1 2.3786 3.8269 -8.0957 46 1 2.3933 3.3139 -4.7356 47 1 2.9722 3.4208 -2.3485 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871346542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:03 Heat of formation + Delta-G solvation = -92.592639 kcal Electronic energy + Delta-G solvation = -31853.699617 eV Core-core repulsion = 27582.711873 eV Total energy + Delta-G solvation = -4270.987744 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.48091 -40.23806 -38.95016 -37.47540 -36.46283 -34.92029 -33.88452 -32.17104 -31.14859 -30.35583 -28.28468 -28.01536 -27.61514 -26.42296 -25.07494 -23.29452 -22.42143 -21.26806 -20.56837 -20.31039 -18.93556 -17.58902 -17.35017 -16.80298 -16.53089 -16.12819 -16.10915 -15.67019 -15.45782 -15.21245 -14.70858 -14.47846 -14.13294 -13.81195 -13.72744 -13.36090 -13.17148 -13.05158 -13.00784 -12.51364 -12.30301 -12.13667 -12.02141 -11.79111 -11.67921 -11.50180 -11.29093 -11.08401 -10.87332 -10.86186 -10.78871 -10.70198 -10.58346 -10.43851 -10.31699 -10.24395 -10.08783 -9.91181 -9.13771 -8.47552 -8.20995 -7.65766 -6.70638 -6.06024 -3.61183 1.63473 1.72871 2.35473 2.81245 3.33411 3.39525 3.50069 3.51930 4.00065 4.37404 4.38423 4.80192 4.88576 5.00138 5.04850 5.08338 5.10754 5.11377 5.12894 5.24213 5.25362 5.35712 5.38833 5.40573 5.49523 5.54216 5.61490 5.68732 5.72379 5.83125 5.93946 6.04354 6.08657 6.29285 6.30392 6.35623 6.42530 6.43494 6.50369 6.53390 6.65847 6.69651 6.89734 6.99631 7.08195 7.56914 7.58007 7.86667 8.10431 8.99571 9.22960 9.71479 10.40685 10.90695 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.006643 B = 0.005432 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4214.108295 B = 5153.838392 C = 7792.317511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.464 3.536 4 O -0.513 6.513 5 C -0.118 4.118 6 C 0.117 3.883 7 N -0.445 5.445 8 C -0.363 4.363 9 H 0.093 0.907 10 C 0.064 3.936 11 N -0.750 5.750 12 Si 0.881 3.119 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.292 1.292 16 C 0.429 3.571 17 O -0.508 6.508 18 C -0.060 4.060 19 H 0.077 0.923 20 C -0.097 4.097 21 C -0.074 4.074 22 C -0.047 4.047 23 C -0.144 4.144 24 C 0.117 3.883 25 O -0.321 6.321 26 C 0.030 3.970 27 C -0.209 4.209 28 C -0.070 4.070 29 C -0.102 4.102 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.261 0.739 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.124 0.876 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.095 0.905 46 H 0.124 0.876 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.290 0.089 -7.105 15.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.307 3.693 4 O -0.401 6.401 5 C -0.156 4.156 6 C -0.007 4.007 7 N -0.166 5.166 8 C -0.487 4.487 9 H 0.110 0.890 10 C -0.150 4.150 11 N -0.385 5.385 12 Si 0.707 3.293 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.219 1.219 16 C 0.217 3.783 17 O -0.384 6.384 18 C -0.082 4.082 19 H 0.095 0.905 20 C -0.135 4.135 21 C -0.111 4.111 22 C -0.047 4.047 23 C -0.162 4.162 24 C 0.073 3.927 25 O -0.235 6.235 26 C -0.066 4.066 27 C -0.228 4.228 28 C -0.088 4.088 29 C -0.103 4.103 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.142 0.858 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.114 0.886 46 H 0.142 0.858 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.678 0.600 -7.292 14.638 hybrid contribution -0.096 -0.948 -0.174 0.969 sum -12.774 -0.349 -7.467 14.801 Atomic orbital electron populations 1.23210 0.77002 1.03323 1.02372 1.86549 1.22962 1.33983 1.84289 1.24160 0.92509 0.81016 0.71592 1.90644 1.67456 1.36261 1.45697 1.21687 0.85333 1.01404 1.07218 1.21263 0.84816 0.93042 1.01593 1.43458 1.02445 1.21188 1.49481 1.19115 0.88424 0.94997 1.46204 0.88958 1.24460 0.96782 0.95951 0.97830 1.70321 1.12665 1.24846 1.30677 0.86670 0.80914 0.83127 0.78553 1.19804 1.20979 1.21867 1.18948 0.87911 0.84139 0.87261 1.90576 1.14803 1.79639 1.53427 1.20717 0.97926 0.96532 0.93021 0.90483 1.22089 1.00186 0.95111 0.96110 1.21035 0.97376 0.98349 0.94368 1.20449 0.95811 0.96531 0.91903 1.19688 0.98726 1.02890 0.94914 1.18722 0.95287 0.96408 0.82316 1.86013 1.50751 1.64613 1.22144 1.22985 0.88387 0.93931 1.01264 1.20981 1.03459 1.04709 0.93612 1.20550 0.96201 0.97226 0.94809 1.20359 0.95998 0.98123 0.95799 0.92092 0.88424 0.92041 0.86533 0.86847 0.90575 0.92869 0.92782 0.91849 0.89131 0.91403 0.89086 0.85798 0.92773 0.92868 0.88635 0.85827 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.85 10.57 -39.25 -0.41 -5.26 16 3 C 0.46 7.07 7.96 36.01 0.29 7.36 16 4 O -0.51 -8.69 15.63 -18.75 -0.29 -8.99 16 5 C -0.12 -1.94 4.83 -27.88 -0.13 -2.07 16 6 C 0.12 2.24 4.62 -4.04 -0.02 2.22 16 7 N -0.44 -10.56 2.98 -114.81 -0.34 -10.91 16 8 C -0.36 -9.34 8.99 -14.93 -0.13 -9.47 16 9 H 0.09 2.19 6.14 -52.48 -0.32 1.87 16 10 C 0.06 1.75 3.98 -17.47 -0.07 1.68 16 11 N -0.75 -21.53 10.60 55.50 0.59 -20.94 16 12 Si 0.88 21.29 29.69 -169.99 -5.05 16.25 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 C 0.43 10.56 6.37 -10.99 -0.07 10.49 16 17 O -0.51 -14.31 11.64 5.54 0.06 -14.25 16 18 C -0.06 -1.20 2.33 -91.89 -0.21 -1.41 16 19 H 0.08 1.46 7.08 -51.92 -0.37 1.09 16 20 C -0.10 -1.76 6.28 -25.33 -0.16 -1.92 16 21 C -0.07 -1.28 6.57 -26.84 -0.18 -1.45 16 22 C -0.05 -0.84 6.13 -104.21 -0.64 -1.48 16 23 C -0.14 -2.38 9.98 -39.38 -0.39 -2.77 16 24 C 0.12 1.87 6.68 -39.26 -0.26 1.60 16 25 O -0.32 -4.56 10.50 -19.42 -0.20 -4.76 16 26 C 0.03 0.29 9.81 101.05 0.99 1.28 16 27 C -0.21 -3.23 9.04 -39.48 -0.36 -3.59 16 28 C -0.07 -1.20 9.44 -39.56 -0.37 -1.58 16 29 C -0.10 -1.92 5.35 -104.16 -0.56 -2.47 16 30 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 33 H 0.12 1.86 6.92 -51.93 -0.36 1.50 16 34 H 0.11 1.85 8.14 -51.93 -0.42 1.42 16 35 H 0.08 1.39 3.21 -51.93 -0.17 1.22 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.26 7.28 8.32 -40.82 -0.34 6.94 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.09 1.84 7.49 -51.93 -0.39 1.45 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 42 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 43 H 0.05 0.50 7.67 -51.93 -0.40 0.11 16 44 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.12 1.57 6.31 -52.48 -0.33 1.24 16 47 H 0.12 2.05 5.74 -52.49 -0.30 1.75 16 LS Contribution 379.66 15.07 5.72 5.72 Total: -1.00 -33.20 379.66 -7.53 -40.74 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.39 Total: 4.58 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -1.21 Total: -2.18 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.25 Total: -31.85 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -0.85 Total: -33.26 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.05 Total: 16.25 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.20 -7.53 -40.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871346542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.854 kcal (2) G-P(sol) polarization free energy of solvation -33.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds