Wall clock time and date at job start Wed Apr 1 2020 04:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 116.99937 * 2 1 4 4 O 1.20826 * 119.99735 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00095 * 180.28016 * 3 2 1 6 6 C 1.53002 * 109.46939 * 179.72638 * 5 3 2 7 7 N 1.46502 * 109.46559 * 187.02887 * 6 5 3 8 8 C 1.37098 * 120.00281 * 329.19711 * 7 6 5 9 9 H 1.08005 * 119.99715 * 10.18578 * 8 7 6 10 10 C 1.38946 * 120.00322 * 190.18453 * 8 7 6 11 11 N 1.31406 * 120.00077 * 41.07655 * 10 8 7 12 12 Si 1.86801 * 119.99881 * 221.07950 * 10 8 7 13 13 H 1.48493 * 109.47228 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47254 * 119.99821 * 12 10 8 15 15 H 1.48503 * 109.46820 * 239.99662 * 12 10 8 16 16 C 1.34775 * 119.99824 * 149.20833 * 7 6 5 17 17 O 1.21296 * 119.99879 * 185.38023 * 16 7 6 18 18 C 1.50699 * 120.00380 * 5.37207 * 16 7 6 19 19 H 1.09007 * 110.26592 * 32.73931 * 18 16 7 20 20 C 1.54333 * 110.30434 * 154.81127 * 18 16 7 21 21 C 1.54347 * 102.39845 * 92.55948 * 20 18 16 22 22 C 1.51389 * 105.16673 * 26.36334 * 21 20 18 23 23 C 1.38411 * 130.33239 * 162.82340 * 22 21 20 24 24 C 1.38602 * 120.16982 * 179.97438 * 23 22 21 25 25 O 1.35899 * 120.09491 * 179.97438 * 24 23 22 26 26 C 1.42891 * 117.00207 * 179.97438 * 25 24 23 27 27 C 1.38751 * 119.81277 * 0.02562 * 24 23 22 28 28 C 1.38003 * 119.88065 * 0.02562 * 27 24 23 29 29 C 1.38260 * 109.75759 * 342.80458 * 22 21 20 30 30 H 1.09002 * 109.47462 * 60.00142 * 1 2 3 31 31 H 1.09001 * 109.46972 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47174 * 299.99616 * 1 2 3 33 33 H 1.09001 * 109.46676 * 299.71979 * 5 3 2 34 34 H 1.09003 * 109.47206 * 59.72142 * 5 3 2 35 35 H 1.09002 * 109.46932 * 307.01959 * 6 5 3 36 36 H 1.08994 * 109.47454 * 67.02684 * 6 5 3 37 37 H 0.97003 * 120.00286 * 184.92581 * 11 10 8 38 38 H 1.08998 * 110.82375 * 210.78321 * 20 18 16 39 39 H 1.09000 * 110.82391 * 334.13635 * 20 18 16 40 40 H 1.08994 * 110.30462 * 145.28550 * 21 20 18 41 41 H 1.08997 * 110.30127 * 267.44864 * 21 20 18 42 42 H 1.07998 * 119.91950 * 359.97438 * 23 22 21 43 43 H 1.09001 * 109.47763 * 300.00341 * 26 25 24 44 44 H 1.09006 * 109.46985 * 60.00383 * 26 25 24 45 45 H 1.09002 * 109.47163 * 180.02562 * 26 25 24 46 46 H 1.08005 * 120.05937 * 179.97438 * 27 24 23 47 47 H 1.08002 * 119.85236 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0064 6 6 4.0000 2.7422 -0.0119 7 7 5.4523 2.8213 -0.1871 8 6 6.2565 1.8210 0.2949 9 1 5.8181 0.9018 0.6545 10 6 7.6354 1.9897 0.3207 11 7 8.1495 3.1443 0.6805 12 14 8.7586 0.5753 -0.1563 13 1 7.9378 -0.6080 -0.5184 14 1 9.5916 0.9750 -1.3187 15 1 9.6391 0.2344 0.9899 16 6 5.9979 3.8776 -0.8219 17 8 7.1884 3.8973 -1.0535 18 6 5.1290 5.0341 -1.2442 19 1 4.3133 5.1725 -0.5344 20 6 5.9694 6.3240 -1.3523 21 6 6.3848 6.3253 -2.8388 22 6 5.3041 5.5415 -3.5527 23 6 4.9796 5.4830 -4.8970 24 6 3.9331 4.6824 -5.3268 25 8 3.6154 4.6265 -6.6469 26 6 2.5255 3.7796 -7.0167 27 6 3.2099 3.9388 -4.4051 28 6 3.5352 4.0001 -3.0654 29 6 4.5823 4.7994 -2.6364 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.9596 0.7831 0.8833 34 1 3.9524 0.7784 -0.8967 35 1 3.5062 3.2639 -0.8318 36 1 3.7223 3.2067 0.9341 37 1 9.1079 3.2853 0.6303 38 1 5.3656 7.2007 -1.1180 39 1 6.8433 6.2726 -0.7028 40 1 6.4256 7.3459 -3.2192 41 1 7.3508 5.8359 -2.9620 42 1 5.5433 6.0628 -5.6129 43 1 2.7478 2.7531 -6.7253 44 1 1.6190 4.1126 -6.5112 45 1 2.3786 3.8269 -8.0957 46 1 2.3933 3.3139 -4.7356 47 1 2.9722 3.4208 -2.3485 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871346542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:02 Heat of formation + Delta-G solvation = -111.598039 kcal Electronic energy + Delta-G solvation = -31854.523753 eV Core-core repulsion = 27582.711873 eV Total energy + Delta-G solvation = -4271.811880 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.81982 -41.43121 -40.34656 -38.94746 -37.64499 -36.50167 -35.40352 -34.05554 -32.50660 -31.88898 -29.51711 -29.33441 -28.58679 -27.65160 -26.72496 -24.75959 -23.73062 -22.90470 -21.80060 -21.57322 -20.61253 -18.87090 -18.59461 -18.32238 -17.71161 -17.53129 -17.30886 -17.00183 -16.66034 -16.61919 -16.37036 -15.91944 -15.76513 -15.28536 -15.23364 -14.60815 -14.43805 -14.31730 -14.13218 -13.84594 -13.78367 -13.59574 -13.36802 -13.11725 -12.98997 -12.77503 -12.72538 -12.66593 -12.57952 -12.25815 -12.23642 -12.05054 -11.98325 -11.89905 -11.76216 -11.68964 -11.50710 -11.46402 -11.02353 -10.03485 -9.76108 -9.12170 -8.62789 -8.08877 -5.63264 0.35103 0.41756 1.15618 1.44253 1.53236 1.58597 1.71604 2.31763 2.45267 2.54646 2.74988 3.18892 3.30992 3.55928 3.74185 3.79585 3.85190 4.03348 4.08453 4.10514 4.20294 4.29219 4.33976 4.35297 4.38101 4.41042 4.41956 4.50820 4.56352 4.58622 4.69264 4.74497 4.74627 4.84974 4.87813 4.97228 5.02047 5.05632 5.17601 5.26820 5.35331 5.36941 5.45973 5.59348 5.73679 5.75097 6.10747 6.45103 6.71359 7.02412 7.32825 7.78033 8.52109 8.87550 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.006643 B = 0.005432 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4214.108295 B = 5153.838392 C = 7792.317511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.475 3.525 4 O -0.532 6.532 5 C -0.112 4.112 6 C 0.117 3.883 7 N -0.457 5.457 8 C -0.370 4.370 9 H 0.110 0.890 10 C 0.018 3.982 11 N -0.789 5.789 12 Si 0.934 3.066 13 H -0.254 1.254 14 H -0.306 1.306 15 H -0.286 1.286 16 C 0.419 3.581 17 O -0.552 6.552 18 C -0.055 4.055 19 H 0.083 0.917 20 C -0.095 4.095 21 C -0.069 4.069 22 C -0.058 4.058 23 C -0.153 4.153 24 C 0.121 3.879 25 O -0.331 6.331 26 C 0.018 3.982 27 C -0.205 4.205 28 C -0.076 4.076 29 C -0.127 4.127 30 H 0.064 0.936 31 H 0.131 0.869 32 H 0.062 0.938 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.253 0.747 38 H 0.095 0.905 39 H 0.059 0.941 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.139 0.861 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.123 0.877 46 H 0.154 0.846 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.062 -1.010 -8.737 18.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.319 3.681 4 O -0.421 6.421 5 C -0.150 4.150 6 C -0.006 4.006 7 N -0.177 5.177 8 C -0.495 4.495 9 H 0.128 0.872 10 C -0.193 4.193 11 N -0.425 5.425 12 Si 0.760 3.240 13 H -0.178 1.178 14 H -0.234 1.234 15 H -0.213 1.213 16 C 0.208 3.792 17 O -0.431 6.431 18 C -0.077 4.077 19 H 0.101 0.899 20 C -0.133 4.133 21 C -0.106 4.106 22 C -0.058 4.058 23 C -0.172 4.172 24 C 0.076 3.924 25 O -0.245 6.245 26 C -0.077 4.077 27 C -0.224 4.224 28 C -0.093 4.093 29 C -0.127 4.127 30 H 0.083 0.917 31 H 0.149 0.851 32 H 0.081 0.919 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.113 0.887 39 H 0.078 0.922 40 H 0.118 0.882 41 H 0.081 0.919 42 H 0.157 0.843 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.141 0.859 46 H 0.171 0.829 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.502 -0.547 -8.915 17.891 hybrid contribution 0.594 -0.643 0.235 0.907 sum -14.907 -1.190 -8.680 17.291 Atomic orbital electron populations 1.23577 0.74633 1.05708 1.02694 1.86519 1.25181 1.32560 1.83695 1.23705 0.91827 0.81342 0.71189 1.90641 1.67726 1.37009 1.46774 1.21491 0.86720 0.99301 1.07501 1.21363 0.82239 0.95267 1.01769 1.43678 1.04297 1.20820 1.48895 1.19560 0.88672 0.96112 1.45188 0.87221 1.25212 0.98430 0.97459 0.98169 1.70408 1.12156 1.26945 1.33033 0.85827 0.79385 0.81394 0.77354 1.17797 1.23428 1.21278 1.19801 0.88041 0.85155 0.86250 1.90547 1.16869 1.80659 1.54989 1.20608 0.97488 0.95325 0.94246 0.89877 1.22075 0.99220 0.95596 0.96376 1.20954 0.95904 0.99910 0.93806 1.20539 0.95860 0.96832 0.92556 1.19902 0.99302 1.03376 0.94604 1.18835 0.94667 0.95545 0.83329 1.86017 1.52231 1.65450 1.20832 1.23358 0.87508 0.93576 1.03209 1.21263 1.03901 1.04525 0.92675 1.20673 0.95881 0.96963 0.95827 1.20328 0.97530 0.99954 0.94926 0.91676 0.85077 0.91883 0.86223 0.86651 0.89633 0.93133 0.93671 0.88679 0.92218 0.88185 0.91857 0.84337 0.92168 0.91536 0.85919 0.82860 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.64 16 2 O -0.36 -8.85 10.57 -51.39 -0.54 -9.40 16 3 C 0.48 13.65 7.96 71.24 0.57 14.22 16 4 O -0.53 -17.18 15.63 21.96 0.34 -16.84 16 5 C -0.11 -3.54 4.83 29.85 0.14 -3.40 16 6 C 0.12 4.44 4.62 86.38 0.40 4.84 16 7 N -0.46 -22.02 2.98 -635.53 -1.90 -23.92 16 8 C -0.37 -19.20 8.99 84.04 0.76 -18.44 16 9 H 0.11 5.14 6.14 -2.91 -0.02 5.12 16 10 C 0.02 1.02 3.98 84.93 0.34 1.35 16 11 N -0.79 -47.26 10.60 21.66 0.23 -47.03 16 12 Si 0.93 44.72 29.69 68.60 2.04 46.76 16 13 H -0.25 -11.25 7.11 99.48 0.71 -10.54 16 14 H -0.31 -15.72 7.11 99.48 0.71 -15.01 16 15 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 16 C 0.42 21.23 6.37 87.66 0.56 21.79 16 17 O -0.55 -32.55 11.64 -3.08 -0.04 -32.59 16 18 C -0.05 -2.23 2.33 -11.61 -0.03 -2.26 16 19 H 0.08 3.18 7.08 -2.38 -0.02 3.16 16 20 C -0.09 -3.52 6.28 31.50 0.20 -3.32 16 21 C -0.07 -2.39 6.57 30.52 0.20 -2.19 16 22 C -0.06 -2.04 6.13 -19.60 -0.12 -2.16 16 23 C -0.15 -4.88 9.98 22.40 0.22 -4.65 16 24 C 0.12 3.59 6.68 22.48 0.15 3.74 16 25 O -0.33 -8.44 10.50 -92.42 -0.97 -9.41 16 26 C 0.02 0.28 9.81 113.37 1.11 1.39 16 27 C -0.21 -5.84 9.04 22.34 0.20 -5.64 16 28 C -0.08 -2.50 9.44 22.29 0.21 -2.29 16 29 C -0.13 -4.71 5.35 -19.57 -0.10 -4.82 16 30 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 31 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 33 H 0.12 3.68 6.92 -2.39 -0.02 3.67 16 34 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 35 H 0.09 3.08 3.21 -2.39 -0.01 3.07 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.25 14.89 8.32 -92.71 -0.77 14.12 16 38 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.06 2.57 7.49 -2.39 -0.02 2.55 16 40 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 43 H 0.06 0.90 7.67 -2.39 -0.02 0.89 16 44 H 0.07 0.90 7.66 -2.38 -0.02 0.88 16 45 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.15 3.34 6.31 -2.91 -0.02 3.32 16 47 H 0.13 4.04 5.74 -2.91 -0.02 4.02 16 Total: -1.00 -74.09 379.66 6.17 -67.92 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 1.00 Total: 24.68 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 6.00 Total: -0.18 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -1.67 Total: -70.95 kcal Atomic # 8 Polarization: -67.03 SS G_CDS: -1.21 Total: -68.23 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.04 Total: 46.76 kcal Total: -74.09 6.17 -67.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871346542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.677 kcal (2) G-P(sol) polarization free energy of solvation -74.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds