Wall clock time and date at job start Wed Apr 1 2020 04:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34224 * 117.00015 * 2 1 4 4 O 1.20827 * 120.00050 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00224 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47339 * 179.97438 * 5 3 2 7 7 C 1.37098 * 120.00294 * 93.71009 * 6 5 3 8 8 H 1.08001 * 120.00225 * 160.91157 * 7 6 5 9 9 C 1.38945 * 119.99802 * 341.18096 * 7 6 5 10 10 N 1.31411 * 120.00062 * 338.52165 * 9 7 6 11 11 Si 1.86805 * 119.99995 * 158.52039 * 9 7 6 12 12 H 1.48493 * 109.46796 * 60.00208 * 11 9 7 13 13 H 1.48502 * 109.47126 * 180.02562 * 11 9 7 14 14 H 1.48491 * 109.47147 * 300.00016 * 11 9 7 15 15 C 1.34774 * 119.99698 * 273.70330 * 6 5 3 16 16 O 1.21295 * 120.00523 * 355.04351 * 15 6 5 17 17 C 1.50703 * 120.00193 * 175.03695 * 15 6 5 18 18 H 1.08998 * 109.67731 * 35.79165 * 17 15 6 19 19 C 1.53319 * 109.68230 * 156.31049 * 17 15 6 20 20 C 1.52711 * 108.38913 * 189.57137 * 19 17 15 21 21 C 1.50642 * 110.62011 * 308.94138 * 20 19 17 22 22 C 1.38832 * 117.69975 * 197.40045 * 21 20 19 23 23 C 1.38425 * 120.50384 * 180.56876 * 22 21 20 24 24 O 1.35899 * 120.17259 * 179.97438 * 23 22 21 25 25 C 1.42903 * 116.99890 * 180.02562 * 24 23 22 26 26 C 1.38758 * 119.65310 * 0.02562 * 23 22 21 27 27 C 1.37836 * 119.71094 * 359.88799 * 26 23 22 28 28 C 1.37714 * 122.56263 * 17.77061 * 21 20 19 29 29 C 1.50647 * 122.53355 * 359.25190 * 28 21 20 30 30 H 1.09000 * 109.47296 * 300.00355 * 1 2 3 31 31 H 1.09009 * 109.46797 * 60.00457 * 1 2 3 32 32 H 1.08997 * 109.47301 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47360 * 59.99325 * 5 3 2 34 34 H 1.09009 * 109.46975 * 299.99676 * 5 3 2 35 35 H 0.97001 * 120.00385 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.68087 * 309.33036 * 19 17 15 37 37 H 1.08997 * 109.68237 * 69.89395 * 19 17 15 38 38 H 1.09000 * 109.25738 * 188.63052 * 20 19 17 39 39 H 1.09002 * 109.19323 * 69.20491 * 20 19 17 40 40 H 1.08003 * 119.74607 * 0.56972 * 22 21 20 41 41 H 1.09000 * 109.47001 * 299.99779 * 25 24 23 42 42 H 1.09000 * 109.47002 * 59.99919 * 25 24 23 43 43 H 1.09002 * 109.47240 * 179.97438 * 25 24 23 44 44 H 1.07997 * 120.14805 * 179.86182 * 26 23 22 45 45 H 1.08001 * 119.68586 * 180.02562 * 27 26 23 46 46 H 1.09004 * 109.24999 * 257.50894 * 29 28 21 47 47 H 1.09001 * 109.25243 * 138.09139 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 7 3.9816 2.6798 -0.0011 7 6 4.2501 3.3157 1.1834 8 1 4.8380 4.2217 1.1889 9 6 3.7706 2.7916 2.3776 10 7 2.7448 1.9703 2.3697 11 14 4.5842 3.2543 3.9942 12 1 4.4996 4.7241 4.1879 13 1 3.8902 2.5663 5.1124 14 1 6.0099 2.8397 3.9673 15 6 4.0999 3.3470 -1.1661 16 8 3.9505 2.7620 -2.2180 17 6 4.4178 4.8201 -1.1618 18 1 5.0989 5.0463 -0.3414 19 6 5.0666 5.2122 -2.4945 20 6 5.5919 6.6410 -2.3726 21 6 4.5172 7.5587 -1.8509 22 6 4.6946 8.9246 -2.0247 23 6 3.7490 9.8210 -1.5573 24 8 3.9298 11.1567 -1.7307 25 6 2.9118 12.0206 -1.2212 26 6 2.6162 9.3487 -0.9100 27 6 2.4420 7.9919 -0.7406 28 6 3.3898 7.0920 -1.2125 29 6 3.1296 5.6239 -0.9973 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 3.9557 0.7809 -0.8907 34 1 3.9563 0.7806 0.8892 35 1 2.4102 1.6041 3.2033 36 1 5.8917 4.5347 -2.7145 37 1 4.3259 5.1610 -3.2925 38 1 5.9172 6.9892 -3.3529 39 1 6.4394 6.6539 -1.6873 40 1 5.5771 9.2905 -2.5284 41 1 1.9628 11.7883 -1.7045 42 1 2.8167 11.8751 -0.1452 43 1 3.1795 13.0574 -1.4250 44 1 1.8745 10.0411 -0.5402 45 1 1.5599 7.6247 -0.2370 46 1 2.3952 5.2786 -1.7250 47 1 2.7371 5.4720 0.0082 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889076912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:20 Heat of formation + Delta-G solvation = -129.689100 kcal Electronic energy + Delta-G solvation = -31476.478502 eV Core-core repulsion = 27203.882135 eV Total energy + Delta-G solvation = -4272.596367 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.35397 -39.50358 -38.78467 -37.78296 -35.53908 -34.67777 -34.47003 -32.32156 -31.57115 -29.71555 -29.20037 -28.31927 -26.95054 -26.16502 -24.79761 -23.53223 -22.39795 -22.01337 -20.39920 -19.47517 -18.90600 -17.59820 -17.03453 -16.59506 -16.30636 -16.07501 -15.75395 -15.43560 -15.30122 -15.04515 -14.58779 -14.41651 -14.24092 -13.87192 -13.66371 -13.23515 -13.20865 -13.03815 -12.74942 -12.48326 -12.42331 -12.25255 -12.00087 -11.73982 -11.69927 -11.51301 -11.26644 -11.24930 -10.91819 -10.86261 -10.78384 -10.61784 -10.51670 -10.45709 -9.99994 -9.95526 -9.77873 -9.51840 -9.01397 -8.58748 -8.48433 -7.94171 -7.82237 -6.51136 -4.00968 1.48792 1.62431 3.08246 3.17802 3.19247 3.26693 3.47129 3.72804 3.89439 4.01261 4.09912 4.60036 4.82848 4.91987 4.94486 5.02561 5.07550 5.18161 5.31264 5.32044 5.40428 5.49355 5.55110 5.70900 5.77288 5.79047 5.84176 5.93719 5.96708 6.04346 6.07613 6.17427 6.22182 6.30728 6.37138 6.43538 6.48397 6.50471 6.59165 6.66436 6.72463 6.87315 6.92748 7.07785 7.35924 7.47459 7.48587 7.60417 8.22466 8.97526 9.15709 9.36422 9.76661 10.56136 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011970 B = 0.003304 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.552832 B = 8472.290914 C = 9065.112238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.378 6.378 3 C 0.485 3.515 4 O -0.495 6.495 5 C 0.156 3.844 6 N -0.428 5.428 7 C -0.336 4.336 8 H 0.104 0.896 9 C 0.040 3.960 10 N -0.865 5.865 11 Si 0.921 3.079 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.478 3.522 16 O -0.602 6.602 17 C -0.085 4.085 18 H 0.091 0.909 19 C -0.098 4.098 20 C -0.080 4.080 21 C -0.037 4.037 22 C -0.155 4.155 23 C 0.112 3.888 24 O -0.322 6.322 25 C 0.029 3.971 26 C -0.209 4.209 27 C -0.079 4.079 28 C -0.092 4.092 29 C -0.059 4.059 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.272 0.728 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.125 0.875 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.095 0.905 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.073 0.927 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 9.363 -3.451 9.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.295 6.295 3 C 0.326 3.674 4 O -0.380 6.380 5 C 0.030 3.970 6 N -0.146 5.146 7 C -0.463 4.463 8 H 0.122 0.878 9 C -0.165 4.165 10 N -0.503 5.503 11 Si 0.748 3.252 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.197 1.197 15 C 0.267 3.733 16 O -0.488 6.488 17 C -0.106 4.106 18 H 0.110 0.890 19 C -0.136 4.136 20 C -0.117 4.117 21 C -0.037 4.037 22 C -0.173 4.173 23 C 0.068 3.932 24 O -0.236 6.236 25 C -0.066 4.066 26 C -0.227 4.227 27 C -0.097 4.097 28 C -0.093 4.093 29 C -0.096 4.096 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.133 0.867 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.143 0.857 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.114 0.886 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.092 0.908 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.325 9.371 -3.883 10.149 hybrid contribution -0.466 0.422 1.427 1.560 sum -0.141 9.793 -2.456 10.097 Atomic orbital electron populations 1.22907 0.78789 1.01686 1.01586 1.86447 1.21614 1.35633 1.85841 1.23844 0.92181 0.80592 0.70801 1.90497 1.66374 1.36264 1.44826 1.20365 0.87401 0.85889 1.03314 1.43384 1.57465 1.07850 1.05880 1.19565 1.32632 1.11664 0.82477 0.87820 1.25191 0.94419 0.97154 0.99722 1.69785 1.19914 1.32062 1.28503 0.86080 0.79421 0.78909 0.80837 1.19795 1.20969 1.19740 1.20138 0.81289 0.88481 0.83385 1.90529 1.57050 1.69694 1.31522 1.20994 0.98111 0.92828 0.98668 0.89046 1.21367 1.00695 0.94207 0.97360 1.20534 0.96044 0.94265 1.00839 1.19471 0.95214 0.92598 0.96412 1.20334 0.99849 0.91409 1.05742 1.18840 0.94799 0.82587 0.96973 1.86027 1.46571 1.14342 1.76655 1.22988 0.91089 0.93615 0.98899 1.21088 0.98809 0.96744 1.06108 1.21004 0.98749 0.92024 0.97971 1.19715 0.94312 0.96103 0.99136 1.20213 0.97111 0.88663 1.03652 0.92618 0.93252 0.89736 0.89826 0.86746 0.91735 0.91196 0.91245 0.90715 0.90365 0.85657 0.92850 0.92806 0.88610 0.85893 0.85749 0.90844 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.85 16 2 O -0.38 -8.10 10.56 -39.24 -0.41 -8.52 16 3 C 0.49 11.85 5.99 36.00 0.22 12.07 16 4 O -0.50 -13.44 15.50 -18.75 -0.29 -13.73 16 5 C 0.16 3.68 5.22 -5.19 -0.03 3.65 16 6 N -0.43 -10.39 2.14 -116.09 -0.25 -10.64 16 7 C -0.34 -8.11 9.01 -14.93 -0.13 -8.25 16 8 H 0.10 2.37 5.98 -52.49 -0.31 2.06 16 9 C 0.04 0.97 4.86 -17.47 -0.08 0.89 16 10 N -0.87 -21.90 8.99 55.50 0.50 -21.41 16 11 Si 0.92 18.93 29.60 -169.99 -5.03 13.89 16 12 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 13 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 14 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 15 C 0.48 11.24 6.63 -10.99 -0.07 11.16 16 16 O -0.60 -15.43 15.87 5.54 0.09 -15.34 16 17 C -0.08 -1.66 1.87 -91.74 -0.17 -1.83 16 18 H 0.09 1.76 6.15 -51.93 -0.32 1.44 16 19 C -0.10 -1.65 4.67 -26.71 -0.12 -1.78 16 20 C -0.08 -1.11 5.67 -28.06 -0.16 -1.27 16 21 C -0.04 -0.56 5.74 -104.62 -0.60 -1.16 16 22 C -0.15 -2.21 9.55 -39.29 -0.38 -2.59 16 23 C 0.11 1.59 6.68 -39.32 -0.26 1.33 16 24 O -0.32 -4.12 10.50 -19.42 -0.20 -4.32 16 25 C 0.03 0.25 9.82 101.05 0.99 1.25 16 26 C -0.21 -2.86 9.04 -39.54 -0.36 -3.22 16 27 C -0.08 -1.21 9.60 -39.46 -0.38 -1.59 16 28 C -0.09 -1.54 5.74 -104.57 -0.60 -2.14 16 29 C -0.06 -1.13 4.97 -28.05 -0.14 -1.27 16 30 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.05 0.84 8.13 -51.92 -0.42 0.42 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.86 7.47 -51.93 -0.39 1.47 16 34 H 0.11 2.66 6.69 -51.92 -0.35 2.31 16 35 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 36 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 37 H 0.07 1.24 8.10 -51.93 -0.42 0.81 16 38 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.13 1.57 8.05 -52.48 -0.42 1.15 16 41 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 42 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.12 1.37 6.33 -52.49 -0.33 1.04 16 45 H 0.12 1.78 8.05 -52.49 -0.42 1.36 16 46 H 0.07 1.50 8.11 -51.93 -0.42 1.08 16 47 H 0.09 1.88 8.05 -51.93 -0.42 1.47 16 LS Contribution 383.66 15.07 5.78 5.78 Total: -1.00 -31.04 383.66 -7.73 -38.77 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -6.69 Total: 8.42 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -1.21 Total: 7.09 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.25 Total: -32.05 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -0.82 Total: -41.91 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.04 -7.73 -38.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889076912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.923 kcal (2) G-P(sol) polarization free energy of solvation -31.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds