Wall clock time and date at job start Wed Apr 1 2020 04:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34224 * 117.00015 * 2 1 4 4 O 1.20827 * 120.00050 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00224 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47339 * 179.97438 * 5 3 2 7 7 C 1.37098 * 120.00294 * 93.71009 * 6 5 3 8 8 H 1.08001 * 120.00225 * 160.91157 * 7 6 5 9 9 C 1.38945 * 119.99802 * 341.18096 * 7 6 5 10 10 N 1.31411 * 120.00062 * 338.52165 * 9 7 6 11 11 Si 1.86805 * 119.99995 * 158.52039 * 9 7 6 12 12 H 1.48493 * 109.46796 * 60.00208 * 11 9 7 13 13 H 1.48502 * 109.47126 * 180.02562 * 11 9 7 14 14 H 1.48491 * 109.47147 * 300.00016 * 11 9 7 15 15 C 1.34774 * 119.99698 * 273.70330 * 6 5 3 16 16 O 1.21295 * 120.00523 * 355.04351 * 15 6 5 17 17 C 1.50703 * 120.00193 * 175.03695 * 15 6 5 18 18 H 1.08998 * 109.67731 * 35.79165 * 17 15 6 19 19 C 1.53319 * 109.68230 * 156.31049 * 17 15 6 20 20 C 1.52711 * 108.38913 * 189.57137 * 19 17 15 21 21 C 1.50642 * 110.62011 * 308.94138 * 20 19 17 22 22 C 1.38832 * 117.69975 * 197.40045 * 21 20 19 23 23 C 1.38425 * 120.50384 * 180.56876 * 22 21 20 24 24 O 1.35899 * 120.17259 * 179.97438 * 23 22 21 25 25 C 1.42903 * 116.99890 * 180.02562 * 24 23 22 26 26 C 1.38758 * 119.65310 * 0.02562 * 23 22 21 27 27 C 1.37836 * 119.71094 * 359.88799 * 26 23 22 28 28 C 1.37714 * 122.56263 * 17.77061 * 21 20 19 29 29 C 1.50647 * 122.53355 * 359.25190 * 28 21 20 30 30 H 1.09000 * 109.47296 * 300.00355 * 1 2 3 31 31 H 1.09009 * 109.46797 * 60.00457 * 1 2 3 32 32 H 1.08997 * 109.47301 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47360 * 59.99325 * 5 3 2 34 34 H 1.09009 * 109.46975 * 299.99676 * 5 3 2 35 35 H 0.97001 * 120.00385 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.68087 * 309.33036 * 19 17 15 37 37 H 1.08997 * 109.68237 * 69.89395 * 19 17 15 38 38 H 1.09000 * 109.25738 * 188.63052 * 20 19 17 39 39 H 1.09002 * 109.19323 * 69.20491 * 20 19 17 40 40 H 1.08003 * 119.74607 * 0.56972 * 22 21 20 41 41 H 1.09000 * 109.47001 * 299.99779 * 25 24 23 42 42 H 1.09000 * 109.47002 * 59.99919 * 25 24 23 43 43 H 1.09002 * 109.47240 * 179.97438 * 25 24 23 44 44 H 1.07997 * 120.14805 * 179.86182 * 26 23 22 45 45 H 1.08001 * 119.68586 * 180.02562 * 27 26 23 46 46 H 1.09004 * 109.24999 * 257.50894 * 29 28 21 47 47 H 1.09001 * 109.25243 * 138.09139 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 7 3.9816 2.6798 -0.0011 7 6 4.2501 3.3157 1.1834 8 1 4.8380 4.2217 1.1889 9 6 3.7706 2.7916 2.3776 10 7 2.7448 1.9703 2.3697 11 14 4.5842 3.2543 3.9942 12 1 4.4996 4.7241 4.1879 13 1 3.8902 2.5663 5.1124 14 1 6.0099 2.8397 3.9673 15 6 4.0999 3.3470 -1.1661 16 8 3.9505 2.7620 -2.2180 17 6 4.4178 4.8201 -1.1618 18 1 5.0989 5.0463 -0.3414 19 6 5.0666 5.2122 -2.4945 20 6 5.5919 6.6410 -2.3726 21 6 4.5172 7.5587 -1.8509 22 6 4.6946 8.9246 -2.0247 23 6 3.7490 9.8210 -1.5573 24 8 3.9298 11.1567 -1.7307 25 6 2.9118 12.0206 -1.2212 26 6 2.6162 9.3487 -0.9100 27 6 2.4420 7.9919 -0.7406 28 6 3.3898 7.0920 -1.2125 29 6 3.1296 5.6239 -0.9973 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 3.9557 0.7809 -0.8907 34 1 3.9563 0.7806 0.8892 35 1 2.4102 1.6041 3.2033 36 1 5.8917 4.5347 -2.7145 37 1 4.3259 5.1610 -3.2925 38 1 5.9172 6.9892 -3.3529 39 1 6.4394 6.6539 -1.6873 40 1 5.5771 9.2905 -2.5284 41 1 1.9628 11.7883 -1.7045 42 1 2.8167 11.8751 -0.1452 43 1 3.1795 13.0574 -1.4250 44 1 1.8745 10.0411 -0.5402 45 1 1.5599 7.6247 -0.2370 46 1 2.3952 5.2786 -1.7250 47 1 2.7371 5.4720 0.0082 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889076912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:19 Heat of formation + Delta-G solvation = -145.876901 kcal Electronic energy + Delta-G solvation = -31477.180458 eV Core-core repulsion = 27203.882135 eV Total energy + Delta-G solvation = -4273.298323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.66101 -41.16374 -40.34982 -39.11694 -37.31972 -36.47952 -35.95978 -33.62839 -33.40201 -31.07968 -30.46551 -29.78915 -28.03491 -27.63031 -26.59991 -24.88628 -23.75207 -23.18606 -22.07517 -21.14087 -20.42940 -18.78197 -18.61529 -18.44278 -18.07203 -17.32304 -17.10504 -16.97140 -16.62460 -16.49062 -16.17776 -15.99235 -15.65286 -15.30298 -14.98080 -14.63487 -14.51797 -14.39722 -14.22371 -14.10880 -13.97947 -13.51835 -13.43643 -13.09200 -13.03451 -12.88599 -12.79632 -12.74432 -12.55622 -12.51015 -12.19661 -12.01665 -11.94670 -11.63658 -11.54418 -11.53984 -11.43458 -11.29572 -10.91646 -10.33540 -9.84839 -9.69139 -8.97711 -8.36710 -5.92398 0.37388 0.45939 1.41995 1.49531 1.58083 1.69522 1.82961 2.25547 2.35632 2.38834 2.75275 2.86294 3.10555 3.73889 3.79352 3.93852 4.03288 4.12565 4.18456 4.24517 4.26037 4.35498 4.38087 4.41431 4.41715 4.42899 4.54159 4.57296 4.61563 4.67138 4.68327 4.72244 4.76111 4.79404 4.96820 5.04457 5.06238 5.10368 5.25995 5.33311 5.41527 5.46664 5.50351 5.65629 5.74218 5.75512 5.86576 6.33541 6.48137 7.09051 7.26923 7.49594 7.89660 8.70221 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011970 B = 0.003304 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.552832 B = 8472.290914 C = 9065.112238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.379 6.379 3 C 0.486 3.514 4 O -0.531 6.531 5 C 0.152 3.848 6 N -0.437 5.437 7 C -0.349 4.349 8 H 0.113 0.887 9 C 0.001 3.999 10 N -0.891 5.891 11 Si 0.988 3.012 12 H -0.271 1.271 13 H -0.287 1.287 14 H -0.262 1.262 15 C 0.465 3.535 16 O -0.630 6.630 17 C -0.080 4.080 18 H 0.096 0.904 19 C -0.091 4.091 20 C -0.073 4.073 21 C -0.040 4.040 22 C -0.159 4.159 23 C 0.115 3.885 24 O -0.331 6.331 25 C 0.018 3.982 26 C -0.207 4.207 27 C -0.089 4.089 28 C -0.118 4.118 29 C -0.043 4.043 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.133 0.867 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.270 0.730 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.146 0.854 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.121 0.879 44 H 0.149 0.851 45 H 0.124 0.876 46 H 0.047 0.953 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.625 11.386 -3.146 11.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.296 6.296 3 C 0.329 3.671 4 O -0.419 6.419 5 C 0.026 3.974 6 N -0.155 5.155 7 C -0.476 4.476 8 H 0.130 0.870 9 C -0.201 4.201 10 N -0.529 5.529 11 Si 0.812 3.188 12 H -0.196 1.196 13 H -0.213 1.213 14 H -0.186 1.186 15 C 0.256 3.744 16 O -0.518 6.518 17 C -0.101 4.101 18 H 0.114 0.886 19 C -0.129 4.129 20 C -0.109 4.109 21 C -0.040 4.040 22 C -0.177 4.177 23 C 0.070 3.930 24 O -0.245 6.245 25 C -0.076 4.076 26 C -0.225 4.225 27 C -0.108 4.108 28 C -0.118 4.118 29 C -0.080 4.080 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.151 0.849 33 H 0.108 0.892 34 H 0.133 0.867 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.164 0.836 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.140 0.860 44 H 0.166 0.834 45 H 0.142 0.858 46 H 0.065 0.935 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.351 11.387 -3.580 12.013 hybrid contribution -0.910 -0.191 1.305 1.602 sum 0.442 11.196 -2.275 11.433 Atomic orbital electron populations 1.23258 0.76301 1.04719 1.01094 1.86414 1.24019 1.33952 1.85207 1.23956 0.92506 0.80824 0.69829 1.90472 1.67184 1.37533 1.46668 1.20431 0.87335 0.86087 1.03505 1.43616 1.57328 1.08178 1.06332 1.19889 1.32879 1.12193 0.82655 0.86978 1.26010 0.94486 0.97025 1.02570 1.69894 1.20948 1.33125 1.28960 0.85059 0.78706 0.78428 0.76599 1.19588 1.21307 1.18620 1.20887 0.80647 0.90020 0.82807 1.90487 1.58343 1.70664 1.32348 1.21004 0.98492 0.90062 1.00552 0.88642 1.21309 1.00095 0.96510 0.95020 1.20541 0.95896 0.91674 1.02807 1.19592 0.94833 0.93547 0.96014 1.20530 1.00699 0.90820 1.05664 1.19005 0.94495 0.83515 0.96032 1.86027 1.48071 1.13706 1.76740 1.23325 0.90737 0.94131 0.99404 1.21302 0.99406 0.96218 1.05581 1.21091 0.98603 0.92857 0.98200 1.19551 0.96150 0.94377 1.01730 1.19932 0.96141 0.90925 1.01050 0.93662 0.93251 0.84909 0.89155 0.86738 0.91994 0.90982 0.92776 0.87926 0.88698 0.83576 0.91986 0.92055 0.86047 0.83363 0.85826 0.93482 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.37 10.56 113.37 1.20 2.56 16 2 O -0.38 -16.42 10.56 -51.36 -0.54 -16.96 16 3 C 0.49 24.51 5.99 71.24 0.43 24.94 16 4 O -0.53 -30.01 15.50 21.96 0.34 -29.67 16 5 C 0.15 7.42 5.22 85.63 0.45 7.86 16 6 N -0.44 -21.94 2.14 -639.59 -1.37 -23.31 16 7 C -0.35 -17.18 9.01 84.04 0.76 -16.42 16 8 H 0.11 5.19 5.98 -2.91 -0.02 5.17 16 9 C 0.00 0.07 4.86 84.93 0.41 0.48 16 10 N -0.89 -46.02 8.99 21.66 0.19 -45.82 16 11 Si 0.99 38.76 29.60 68.60 2.03 40.79 16 12 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 13 H -0.29 -11.35 7.11 99.48 0.71 -10.64 16 14 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 15 C 0.47 22.74 6.63 87.66 0.58 23.32 16 16 O -0.63 -33.57 15.87 -3.08 -0.05 -33.62 16 17 C -0.08 -3.22 1.87 -11.52 -0.02 -3.24 16 18 H 0.10 3.72 6.15 -2.39 -0.01 3.71 16 19 C -0.09 -3.07 4.67 30.61 0.14 -2.93 16 20 C -0.07 -1.88 5.67 29.73 0.17 -1.71 16 21 C -0.04 -1.16 5.74 -19.86 -0.11 -1.28 16 22 C -0.16 -4.14 9.55 22.46 0.21 -3.93 16 23 C 0.11 2.96 6.68 22.44 0.15 3.11 16 24 O -0.33 -7.47 10.50 -92.41 -0.97 -8.44 16 25 C 0.02 0.26 9.82 113.37 1.11 1.37 16 26 C -0.21 -5.29 9.04 22.30 0.20 -5.09 16 27 C -0.09 -2.72 9.60 22.35 0.21 -2.51 16 28 C -0.12 -3.97 5.74 -19.83 -0.11 -4.08 16 29 C -0.04 -1.72 4.97 29.74 0.15 -1.57 16 30 H 0.04 1.64 8.13 -2.39 -0.02 1.62 16 31 H 0.05 1.68 8.13 -2.38 -0.02 1.66 16 32 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.09 4.18 7.47 -2.39 -0.02 4.16 16 34 H 0.11 5.49 6.69 -2.38 -0.02 5.47 16 35 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 36 H 0.07 2.37 8.12 -2.39 -0.02 2.35 16 37 H 0.05 1.96 8.10 -2.39 -0.02 1.94 16 38 H 0.10 2.13 8.13 -2.39 -0.02 2.11 16 39 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.15 3.16 8.05 -2.91 -0.02 3.13 16 41 H 0.06 0.78 7.67 -2.39 -0.02 0.76 16 42 H 0.06 0.78 7.67 -2.39 -0.02 0.77 16 43 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.15 2.93 6.33 -2.91 -0.02 2.91 16 45 H 0.12 3.65 8.05 -2.91 -0.02 3.63 16 46 H 0.05 2.07 8.11 -2.38 -0.02 2.05 16 47 H 0.06 2.73 8.05 -2.39 -0.02 2.71 16 Total: -1.00 -68.89 383.66 6.55 -62.35 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: 0.99 Total: 33.80 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: 5.92 Total: 20.89 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: -1.17 Total: -69.14 kcal Atomic # 8 Polarization: -87.47 SS G_CDS: -1.22 Total: -88.69 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Total: -68.89 6.55 -62.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889076912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.531 kcal (2) G-P(sol) polarization free energy of solvation -68.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds