Wall clock time and date at job start Wed Apr 1 2020 04:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34952 * 126.54119 * 2 1 4 4 O 1.35205 * 125.49124 * 359.97438 * 3 2 1 5 5 N 1.31539 * 109.01280 * 179.97438 * 3 2 1 6 6 C 1.33218 * 109.76085 * 359.72560 * 5 3 2 7 7 C 1.36717 * 107.96720 * 0.44031 * 6 5 3 8 8 C 1.46383 * 126.82948 * 179.83365 * 7 6 5 9 9 O 1.21738 * 119.99665 * 186.71717 * 8 7 6 10 10 N 1.34767 * 119.99884 * 6.99240 * 8 7 6 11 11 C 1.47428 * 125.64878 * 5.27396 * 10 8 7 12 12 C 1.55127 * 104.72263 * 155.82032 * 11 10 8 13 13 H 1.09005 * 110.94296 * 155.28915 * 12 11 10 14 14 N 1.46498 * 111.19289 * 279.19088 * 12 11 10 15 15 C 1.36940 * 120.00026 * 267.19011 * 14 12 11 16 16 H 1.07997 * 120.00138 * 359.97438 * 15 14 12 17 17 C 1.38815 * 119.99888 * 179.97438 * 15 14 12 18 18 N 1.31621 * 120.00223 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00264 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47101 * 89.99713 * 19 17 15 21 21 H 1.48499 * 109.47388 * 210.00006 * 19 17 15 22 22 H 1.48497 * 109.47043 * 330.00294 * 19 17 15 23 23 C 1.55156 * 101.48699 * 37.29302 * 12 11 10 24 24 H 1.08998 * 110.87103 * 82.77079 * 23 12 11 25 25 N 1.46501 * 110.71931 * 205.96921 * 23 12 11 26 26 C 1.35308 * 125.86859 * 79.69834 * 25 23 12 27 27 C 1.35346 * 106.17922 * 179.90253 * 26 25 23 28 28 N 1.33774 * 106.49505 * 0.34570 * 27 26 25 29 29 N 1.28638 * 108.88432 * 359.77951 * 28 27 26 30 30 C 1.47026 * 125.65167 * 185.58400 * 10 8 7 31 31 H 1.09000 * 109.46685 * 265.13605 * 1 2 3 32 32 H 1.08995 * 109.47315 * 25.14013 * 1 2 3 33 33 H 1.09000 * 109.46838 * 145.13998 * 1 2 3 34 34 H 0.96704 * 113.99828 * 90.00330 * 4 3 2 35 35 H 1.08000 * 126.01898 * 180.27872 * 6 5 3 36 36 H 1.09001 * 110.36469 * 274.74685 * 11 10 8 37 37 H 1.08998 * 110.36602 * 37.07205 * 11 10 8 38 38 H 0.97003 * 120.00008 * 87.18451 * 14 12 11 39 39 H 0.96992 * 120.00514 * 180.02562 * 18 17 15 40 40 H 1.08000 * 126.91068 * 0.02562 * 26 25 23 41 41 H 1.07998 * 126.75601 * 180.12307 * 27 26 25 42 42 H 1.09001 * 109.88034 * 300.44238 * 30 10 8 43 43 H 1.09001 * 109.88140 * 61.44589 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2685 1.0842 0.0000 4 8 1.8514 2.3704 -0.0005 5 7 3.5228 0.6881 0.0006 6 6 3.5747 -0.6431 0.0069 7 6 2.2917 -1.1152 0.0006 8 6 1.8728 -2.5178 0.0008 9 8 0.6960 -2.8016 -0.1286 10 7 2.7892 -3.4947 0.1498 11 6 4.2224 -3.2928 0.4299 12 6 4.6810 -4.6106 1.1078 13 1 5.7513 -4.7665 0.9724 14 7 4.3268 -4.6261 2.5293 15 6 5.2263 -4.1874 3.4639 16 1 6.1971 -3.8304 3.1533 17 6 4.8904 -4.2016 4.8107 18 7 5.7552 -3.7805 5.7092 19 14 3.2111 -4.8185 5.3482 20 1 3.2793 -6.2795 5.6048 21 1 2.8001 -4.1163 6.5904 22 1 2.2189 -4.5500 4.2764 23 6 3.8612 -5.6655 0.3189 24 1 4.3553 -5.9192 -0.6190 25 7 3.6448 -6.8662 1.1299 26 6 2.7128 -7.0103 2.1001 27 6 2.8621 -8.2658 2.5831 28 7 3.8701 -8.8186 1.8990 29 7 4.3123 -7.9636 1.0456 30 6 2.5264 -4.9381 0.0535 31 1 -0.3633 -0.0871 1.0240 32 1 -0.3634 0.9303 -0.4366 33 1 -0.3633 -0.8433 -0.5874 34 1 1.7299 2.7447 0.8828 35 1 4.4723 -1.2436 0.0131 36 1 4.7710 -3.1299 -0.4978 37 1 4.3616 -2.4500 1.1070 38 1 3.4550 -4.9471 2.8084 39 1 5.5207 -3.7907 6.6503 40 1 1.9930 -6.2726 2.4228 41 1 2.2838 -8.7290 3.3689 42 1 1.7893 -5.2313 0.8011 43 1 2.1602 -5.1825 -0.9436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070250408.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:35 Heat of formation + Delta-G solvation = 148.255229 kcal Electronic energy + Delta-G solvation = -31607.346090 eV Core-core repulsion = 27307.847452 eV Total energy + Delta-G solvation = -4299.498638 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.05346 -42.43355 -40.04558 -38.02679 -37.50341 -34.70015 -34.10639 -33.87271 -31.58510 -30.90761 -30.55222 -29.00232 -28.19803 -27.22706 -24.99546 -23.87521 -22.68891 -22.49045 -21.82178 -21.37942 -20.38615 -19.73177 -18.79180 -18.12826 -17.67941 -17.10332 -16.77398 -16.21995 -16.14371 -15.66451 -15.37619 -15.10699 -14.67657 -14.54312 -14.45214 -14.04324 -13.84477 -13.69415 -13.24108 -13.03094 -12.93307 -12.83782 -12.69651 -12.46427 -12.38449 -11.84664 -11.61290 -11.43003 -11.23223 -11.10837 -10.70185 -10.51457 -10.44691 -10.04326 -9.96727 -9.90736 -9.71661 -9.35065 -9.07883 -8.87262 -8.61138 -7.63720 -6.01970 -3.42886 1.00293 1.83591 1.86296 2.32778 2.50630 2.86492 2.96174 3.13025 3.18372 3.20819 3.27902 3.59601 3.93241 4.30671 4.35220 4.47135 4.54348 4.56878 4.68499 4.79495 4.84925 4.94493 5.06276 5.14393 5.19880 5.29098 5.33987 5.37314 5.39399 5.53027 5.60674 5.70655 5.82561 5.87045 5.92393 6.16014 6.19964 6.28231 6.38932 6.79413 7.23027 7.24813 7.59628 7.64859 7.93077 8.13763 8.76598 8.86562 9.59761 9.72184 11.14632 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.011396 B = 0.004134 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.364873 B = 6771.169324 C = 7928.140534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.430 5.430 3 C 0.396 3.604 4 O -0.441 6.441 5 N -0.485 5.485 6 C 0.055 3.945 7 C -0.075 4.075 8 C 0.616 3.384 9 O -0.551 6.551 10 N -0.594 5.594 11 C 0.053 3.947 12 C 0.169 3.831 13 H 0.104 0.896 14 N -0.728 5.728 15 C -0.261 4.261 16 H 0.098 0.902 17 C 0.021 3.979 18 N -0.918 5.918 19 Si 0.873 3.127 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.280 1.280 23 C 0.112 3.888 24 H 0.137 0.863 25 N -0.264 5.264 26 C -0.044 4.044 27 C -0.050 4.050 28 N -0.273 5.273 29 N -0.079 5.079 30 C 0.109 3.891 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.406 0.594 35 H 0.199 0.801 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.363 0.637 39 H 0.263 0.737 40 H 0.180 0.820 41 H 0.185 0.815 42 H 0.080 0.920 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.158 5.270 -12.656 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.123 5.123 3 C 0.097 3.903 4 O -0.242 6.242 5 N -0.213 5.213 6 C -0.099 4.099 7 C -0.190 4.190 8 C 0.406 3.594 9 O -0.431 6.431 10 N -0.327 5.327 11 C -0.073 4.073 12 C 0.055 3.945 13 H 0.122 0.878 14 N -0.369 5.369 15 C -0.390 4.390 16 H 0.116 0.884 17 C -0.177 4.177 18 N -0.563 5.563 19 Si 0.702 3.298 20 H -0.201 1.201 21 H -0.214 1.214 22 H -0.207 1.207 23 C 0.007 3.993 24 H 0.155 0.845 25 N -0.057 5.057 26 C -0.195 4.195 27 C -0.207 4.207 28 N -0.138 5.138 29 N -0.059 5.059 30 C -0.015 4.015 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.263 0.737 35 H 0.215 0.785 36 H 0.099 0.901 37 H 0.125 0.875 38 H 0.198 0.802 39 H 0.074 0.926 40 H 0.197 0.803 41 H 0.203 0.797 42 H 0.098 0.902 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.021 5.122 -13.868 17.319 hybrid contribution -2.985 0.169 1.803 3.491 sum -12.006 5.292 -12.065 17.825 Atomic orbital electron populations 1.22256 0.75316 1.05395 1.04577 1.45579 1.08324 1.05527 1.52860 1.20271 0.84551 0.81324 1.04181 1.84782 1.87022 1.17969 1.34446 1.70379 1.16226 1.12951 1.21755 1.23288 0.96208 0.90133 1.00298 1.20267 0.91160 0.87846 1.19740 1.16079 0.84233 0.82456 0.76609 1.90799 1.16522 1.83683 1.52075 1.47690 1.10011 1.04791 1.70166 1.24029 0.79317 1.03410 1.00554 1.21763 0.98581 0.88973 0.85224 0.87802 1.42705 1.16858 1.77165 1.00207 1.18973 0.96854 1.36939 0.86241 0.88438 1.24636 0.97242 1.00130 0.95689 1.69670 1.34535 1.51089 1.01047 0.86769 0.85108 0.79585 0.78298 1.20091 1.21351 1.20694 1.23164 0.97999 0.82305 0.95846 0.84494 1.46958 1.22127 1.11726 1.24904 1.23402 0.99470 1.00617 0.96002 1.23446 1.00182 0.93193 1.03904 1.75038 1.10134 1.23417 1.05257 1.78216 1.17721 0.90033 1.19910 1.22055 0.95678 0.80316 1.03414 0.90099 0.89195 0.87763 0.73688 0.78503 0.90110 0.87469 0.80239 0.92636 0.80331 0.79748 0.90171 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 10.61 59.85 0.63 1.26 16 2 N -0.43 -5.37 3.20 -122.12 -0.39 -5.76 16 3 C 0.40 5.02 9.01 -89.59 -0.81 4.21 16 4 O -0.44 -4.18 13.45 -17.31 -0.23 -4.42 16 5 N -0.48 -7.05 11.22 -14.62 -0.16 -7.21 16 6 C 0.06 0.75 10.17 -17.50 -0.18 0.57 16 7 C -0.07 -1.04 6.85 -81.97 -0.56 -1.60 16 8 C 0.62 9.00 7.80 -12.99 -0.10 8.90 16 9 O -0.55 -9.02 15.33 5.15 0.08 -8.94 16 10 N -0.59 -7.74 3.32 -172.03 -0.57 -8.31 16 11 C 0.05 0.65 4.82 -2.41 -0.01 0.63 16 12 C 0.17 2.49 3.58 -65.67 -0.24 2.26 16 13 H 0.10 1.51 8.09 -51.93 -0.42 1.09 16 14 N -0.73 -14.57 4.52 -51.24 -0.23 -14.80 16 15 C -0.26 -6.54 10.44 -15.06 -0.16 -6.69 16 16 H 0.10 2.59 8.06 -52.49 -0.42 2.17 16 17 C 0.02 0.57 5.50 -17.43 -0.10 0.47 16 18 N -0.92 -27.12 13.97 55.49 0.78 -26.34 16 19 Si 0.87 20.65 27.73 -169.99 -4.71 15.93 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.15 6.52 56.52 0.37 -5.78 16 23 C 0.11 1.39 3.85 -66.10 -0.25 1.14 16 24 H 0.14 1.30 8.14 -51.93 -0.42 0.87 16 25 N -0.26 -4.09 3.14 -52.99 -0.17 -4.26 16 26 C -0.04 -0.69 8.48 -17.05 -0.14 -0.84 16 27 C -0.05 -0.81 12.05 -17.74 -0.21 -1.02 16 28 N -0.27 -4.99 12.41 30.23 0.38 -4.61 16 29 N -0.08 -1.40 13.17 60.35 0.79 -0.60 16 30 C 0.11 1.31 6.48 -3.07 -0.02 1.29 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.62 8.04 -51.93 -0.42 0.20 16 33 H 0.10 1.10 6.65 -51.93 -0.35 0.75 16 34 H 0.41 1.81 9.06 45.56 0.41 2.22 16 35 H 0.20 2.26 4.79 -52.49 -0.25 2.01 16 36 H 0.08 0.70 7.76 -51.93 -0.40 0.30 16 37 H 0.11 1.51 5.92 -51.93 -0.31 1.20 16 38 H 0.36 7.35 3.11 -40.82 -0.13 7.22 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.18 2.59 6.48 -52.49 -0.34 2.25 16 41 H 0.19 2.39 8.06 -52.49 -0.42 1.97 16 42 H 0.08 1.05 6.03 -51.93 -0.31 0.74 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 356.62 15.07 5.37 5.37 Total: -1.00 -35.92 356.62 -5.01 -40.94 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -3.79 Total: 12.41 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: -2.15 Total: 10.58 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: 0.42 Total: -71.89 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.15 Total: -13.35 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.71 Total: 15.93 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.92 -5.01 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070250408.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.192 kcal (2) G-P(sol) polarization free energy of solvation -35.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds