Wall clock time and date at job start Wed Apr 1 2020 04:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34952 * 126.54119 * 2 1 4 4 O 1.35205 * 125.49124 * 359.97438 * 3 2 1 5 5 N 1.31539 * 109.01280 * 179.97438 * 3 2 1 6 6 C 1.33218 * 109.76085 * 359.72560 * 5 3 2 7 7 C 1.36717 * 107.96720 * 0.44031 * 6 5 3 8 8 C 1.46383 * 126.82948 * 179.83365 * 7 6 5 9 9 O 1.21738 * 119.99665 * 186.71717 * 8 7 6 10 10 N 1.34767 * 119.99884 * 6.99240 * 8 7 6 11 11 C 1.47428 * 125.64878 * 5.27396 * 10 8 7 12 12 C 1.55127 * 104.72263 * 155.82032 * 11 10 8 13 13 H 1.09005 * 110.94296 * 155.28915 * 12 11 10 14 14 N 1.46498 * 111.19289 * 279.19088 * 12 11 10 15 15 C 1.36940 * 120.00026 * 267.19011 * 14 12 11 16 16 H 1.07997 * 120.00138 * 359.97438 * 15 14 12 17 17 C 1.38815 * 119.99888 * 179.97438 * 15 14 12 18 18 N 1.31621 * 120.00223 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00264 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47101 * 89.99713 * 19 17 15 21 21 H 1.48499 * 109.47388 * 210.00006 * 19 17 15 22 22 H 1.48497 * 109.47043 * 330.00294 * 19 17 15 23 23 C 1.55156 * 101.48699 * 37.29302 * 12 11 10 24 24 H 1.08998 * 110.87103 * 82.77079 * 23 12 11 25 25 N 1.46501 * 110.71931 * 205.96921 * 23 12 11 26 26 C 1.35308 * 125.86859 * 79.69834 * 25 23 12 27 27 C 1.35346 * 106.17922 * 179.90253 * 26 25 23 28 28 N 1.33774 * 106.49505 * 0.34570 * 27 26 25 29 29 N 1.28638 * 108.88432 * 359.77951 * 28 27 26 30 30 C 1.47026 * 125.65167 * 185.58400 * 10 8 7 31 31 H 1.09000 * 109.46685 * 265.13605 * 1 2 3 32 32 H 1.08995 * 109.47315 * 25.14013 * 1 2 3 33 33 H 1.09000 * 109.46838 * 145.13998 * 1 2 3 34 34 H 0.96704 * 113.99828 * 90.00330 * 4 3 2 35 35 H 1.08000 * 126.01898 * 180.27872 * 6 5 3 36 36 H 1.09001 * 110.36469 * 274.74685 * 11 10 8 37 37 H 1.08998 * 110.36602 * 37.07205 * 11 10 8 38 38 H 0.97003 * 120.00008 * 87.18451 * 14 12 11 39 39 H 0.96992 * 120.00514 * 180.02562 * 18 17 15 40 40 H 1.08000 * 126.91068 * 0.02562 * 26 25 23 41 41 H 1.07998 * 126.75601 * 180.12307 * 27 26 25 42 42 H 1.09001 * 109.88034 * 300.44238 * 30 10 8 43 43 H 1.09001 * 109.88140 * 61.44589 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2685 1.0842 0.0000 4 8 1.8514 2.3704 -0.0005 5 7 3.5228 0.6881 0.0006 6 6 3.5747 -0.6431 0.0069 7 6 2.2917 -1.1152 0.0006 8 6 1.8728 -2.5178 0.0008 9 8 0.6960 -2.8016 -0.1286 10 7 2.7892 -3.4947 0.1498 11 6 4.2224 -3.2928 0.4299 12 6 4.6810 -4.6106 1.1078 13 1 5.7513 -4.7665 0.9724 14 7 4.3268 -4.6261 2.5293 15 6 5.2263 -4.1874 3.4639 16 1 6.1971 -3.8304 3.1533 17 6 4.8904 -4.2016 4.8107 18 7 5.7552 -3.7805 5.7092 19 14 3.2111 -4.8185 5.3482 20 1 3.2793 -6.2795 5.6048 21 1 2.8001 -4.1163 6.5904 22 1 2.2189 -4.5500 4.2764 23 6 3.8612 -5.6655 0.3189 24 1 4.3553 -5.9192 -0.6190 25 7 3.6448 -6.8662 1.1299 26 6 2.7128 -7.0103 2.1001 27 6 2.8621 -8.2658 2.5831 28 7 3.8701 -8.8186 1.8990 29 7 4.3123 -7.9636 1.0456 30 6 2.5264 -4.9381 0.0535 31 1 -0.3633 -0.0871 1.0240 32 1 -0.3634 0.9303 -0.4366 33 1 -0.3633 -0.8433 -0.5874 34 1 1.7299 2.7447 0.8828 35 1 4.4723 -1.2436 0.0131 36 1 4.7710 -3.1299 -0.4978 37 1 4.3616 -2.4500 1.1070 38 1 3.4550 -4.9471 2.8084 39 1 5.5207 -3.7907 6.6503 40 1 1.9930 -6.2726 2.4228 41 1 2.2838 -8.7290 3.3689 42 1 1.7893 -5.2313 0.8011 43 1 2.1602 -5.1825 -0.9436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070250408.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:34 Heat of formation + Delta-G solvation = 117.167826 kcal Electronic energy + Delta-G solvation = -31608.694141 eV Core-core repulsion = 27307.847452 eV Total energy + Delta-G solvation = -4300.846689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.28250 -43.38813 -41.12775 -39.15088 -38.33862 -36.02528 -35.41972 -34.96733 -33.32823 -32.12381 -31.71917 -30.25422 -29.24136 -28.07351 -26.16243 -25.49634 -23.81918 -23.70200 -22.79258 -22.58389 -21.61787 -20.75940 -19.91134 -19.58295 -18.83031 -18.14693 -17.75245 -17.39272 -17.21444 -16.84212 -16.56084 -16.29088 -16.23733 -15.75520 -15.39542 -15.25313 -14.96018 -14.82525 -14.60124 -14.34567 -13.95875 -13.80428 -13.72517 -13.61418 -13.33637 -13.06704 -13.01536 -12.81433 -12.73589 -12.50723 -12.19174 -11.98066 -11.86724 -11.55675 -11.19409 -11.06873 -10.96568 -10.89838 -10.34232 -9.99083 -9.62821 -9.36472 -8.07351 -5.42802 0.03244 0.60414 0.91122 1.24239 1.28534 1.33198 1.37953 1.52695 1.60503 1.94414 2.15191 2.40666 2.77942 2.90908 3.15714 3.33036 3.34344 3.48514 3.54574 3.76998 3.78160 3.86368 3.95048 4.09918 4.21010 4.25100 4.27285 4.39816 4.45557 4.53655 4.57239 4.71076 4.76940 4.78696 4.90240 5.09474 5.20665 5.28236 5.51333 5.60641 5.73823 6.13874 6.17391 6.49870 6.64407 6.87358 6.98366 7.49982 7.70702 7.84642 9.12743 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.011396 B = 0.004134 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.364873 B = 6771.169324 C = 7928.140534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.432 5.432 3 C 0.403 3.597 4 O -0.439 6.439 5 N -0.518 5.518 6 C 0.055 3.945 7 C -0.095 4.095 8 C 0.615 3.385 9 O -0.574 6.574 10 N -0.592 5.592 11 C 0.064 3.936 12 C 0.156 3.844 13 H 0.108 0.892 14 N -0.736 5.736 15 C -0.224 4.224 16 H 0.075 0.925 17 C -0.051 4.051 18 N -0.974 5.974 19 Si 0.927 3.073 20 H -0.274 1.274 21 H -0.302 1.302 22 H -0.254 1.254 23 C 0.119 3.881 24 H 0.175 0.825 25 N -0.260 5.260 26 C -0.050 4.050 27 C -0.057 4.057 28 N -0.303 5.303 29 N -0.097 5.097 30 C 0.111 3.889 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.428 0.572 35 H 0.212 0.788 36 H 0.127 0.873 37 H 0.090 0.910 38 H 0.363 0.637 39 H 0.256 0.744 40 H 0.192 0.808 41 H 0.210 0.790 42 H 0.070 0.930 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.660 5.570 -14.720 19.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.125 5.125 3 C 0.103 3.897 4 O -0.244 6.244 5 N -0.247 5.247 6 C -0.100 4.100 7 C -0.211 4.211 8 C 0.406 3.594 9 O -0.455 6.455 10 N -0.324 5.324 11 C -0.061 4.061 12 C 0.045 3.955 13 H 0.126 0.874 14 N -0.378 5.378 15 C -0.355 4.355 16 H 0.093 0.907 17 C -0.243 4.243 18 N -0.623 5.623 19 Si 0.755 3.245 20 H -0.200 1.200 21 H -0.229 1.229 22 H -0.179 1.179 23 C 0.015 3.985 24 H 0.193 0.807 25 N -0.054 5.054 26 C -0.202 4.202 27 C -0.215 4.215 28 N -0.168 5.168 29 N -0.076 5.076 30 C -0.013 4.013 31 H 0.106 0.894 32 H 0.134 0.866 33 H 0.111 0.889 34 H 0.290 0.710 35 H 0.228 0.772 36 H 0.145 0.855 37 H 0.108 0.892 38 H 0.198 0.802 39 H 0.065 0.935 40 H 0.209 0.791 41 H 0.227 0.773 42 H 0.088 0.912 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.547 5.416 -16.012 19.923 hybrid contribution -2.484 0.168 2.325 3.407 sum -13.031 5.584 -13.686 19.706 Atomic orbital electron populations 1.22410 0.73761 1.06323 1.05060 1.45760 1.09285 1.05094 1.52368 1.20382 0.84331 0.82247 1.02728 1.84748 1.86694 1.16453 1.36486 1.70366 1.17523 1.13532 1.23327 1.23551 0.96685 0.90094 0.99648 1.20312 0.91641 0.88014 1.21085 1.16166 0.84045 0.82833 0.76392 1.90786 1.17347 1.84021 1.53367 1.47695 1.10005 1.05064 1.69628 1.23915 0.79415 1.00684 1.02039 1.22070 0.99481 0.91119 0.82871 0.87410 1.42649 1.15980 1.77382 1.01817 1.18966 0.96322 1.33362 0.86847 0.90735 1.25311 1.00608 1.02179 0.96233 1.69833 1.36794 1.54715 1.00992 0.85859 0.82025 0.78726 0.77893 1.19964 1.22904 1.17901 1.23420 0.98117 0.80635 0.96285 0.80736 1.47180 1.21525 1.11861 1.24810 1.23685 0.99696 1.00812 0.95972 1.23976 0.99785 0.93531 1.04179 1.75006 1.11276 1.24369 1.06166 1.78149 1.18370 0.90712 1.20332 1.22147 0.95000 0.79480 1.04631 0.89430 0.86577 0.88889 0.71022 0.77193 0.85500 0.89181 0.80244 0.93485 0.79103 0.77338 0.91157 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 10.61 127.77 1.36 2.46 16 2 N -0.43 -10.02 3.20 -651.98 -2.09 -12.11 16 3 C 0.40 9.48 9.01 179.99 1.62 11.10 16 4 O -0.44 -7.31 13.45 -84.86 -1.14 -8.45 16 5 N -0.52 -14.35 11.22 -313.65 -3.52 -17.87 16 6 C 0.05 1.39 10.17 84.13 0.86 2.24 16 7 C -0.09 -2.48 6.85 39.80 0.27 -2.21 16 8 C 0.62 16.65 7.80 86.36 0.67 17.32 16 9 O -0.57 -17.71 15.33 -4.47 -0.07 -17.78 16 10 N -0.59 -13.67 3.32 -816.37 -2.71 -16.38 16 11 C 0.06 1.38 4.82 86.93 0.42 1.80 16 12 C 0.16 4.20 3.58 46.46 0.17 4.37 16 13 H 0.11 2.87 8.09 -2.38 -0.02 2.85 16 14 N -0.74 -28.22 4.52 -316.01 -1.43 -29.65 16 15 C -0.22 -11.20 10.44 84.03 0.88 -10.32 16 16 H 0.07 4.02 8.06 -2.91 -0.02 4.00 16 17 C -0.05 -2.79 5.50 84.86 0.47 -2.33 16 18 N -0.97 -59.33 13.97 21.65 0.30 -59.03 16 19 Si 0.93 42.66 27.73 68.60 1.90 44.56 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 22 H -0.25 -10.36 6.52 99.48 0.65 -9.71 16 23 C 0.12 2.55 3.85 46.18 0.18 2.73 16 24 H 0.18 2.48 8.14 -2.39 -0.02 2.46 16 25 N -0.26 -7.40 3.14 -321.56 -1.01 -8.41 16 26 C -0.05 -1.46 8.48 83.49 0.71 -0.76 16 27 C -0.06 -1.74 12.05 83.73 1.01 -0.73 16 28 N -0.30 -10.69 12.41 -58.26 -0.72 -11.41 16 29 N -0.10 -3.23 13.17 37.02 0.49 -2.74 16 30 C 0.11 2.28 6.48 86.72 0.56 2.84 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.12 1.30 8.04 -2.39 -0.02 1.28 16 33 H 0.09 1.82 6.65 -2.39 -0.02 1.81 16 34 H 0.43 2.75 9.06 -74.05 -0.67 2.07 16 35 H 0.21 4.39 4.79 -2.91 -0.01 4.37 16 36 H 0.13 1.65 7.76 -2.39 -0.02 1.63 16 37 H 0.09 2.35 5.92 -2.39 -0.01 2.33 16 38 H 0.36 13.91 3.11 -92.71 -0.29 13.62 16 39 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 40 H 0.19 5.00 6.48 -2.91 -0.02 4.98 16 41 H 0.21 4.95 8.06 -2.91 -0.02 4.93 16 42 H 0.07 1.63 6.03 -2.39 -0.01 1.62 16 43 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -79.76 356.62 -0.74 -80.51 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.09 Total: 30.25 kcal Atomic # 6 Polarization: 19.34 SS G_CDS: 9.17 Total: 28.51 kcal Atomic # 7 Polarization: -146.90 SS G_CDS: -10.69 Total: -157.60 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -1.21 Total: -26.23 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.90 Total: 44.56 kcal Total: -79.76 -0.74 -80.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070250408.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.676 kcal (2) G-P(sol) polarization free energy of solvation -79.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds