Wall clock time and date at job start Wed Apr 1 2020 04:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00091 * 2 1 4 4 C 1.52995 * 109.47474 * 124.72301 * 3 2 1 5 5 H 1.09003 * 109.47046 * 305.00173 * 4 3 2 6 6 N 1.46502 * 109.46928 * 65.00036 * 4 3 2 7 7 C 1.34781 * 119.99928 * 274.99723 * 6 4 3 8 8 O 1.21278 * 120.00040 * 0.02562 * 7 6 4 9 9 C 1.50702 * 120.00044 * 179.97438 * 7 6 4 10 10 C 1.50693 * 109.47167 * 180.02562 * 9 7 6 11 11 C 1.38321 * 119.96593 * 269.72693 * 10 9 7 12 12 C 1.38283 * 120.13775 * 179.76521 * 11 10 9 13 13 C 1.38124 * 120.07077 * 0.51465 * 12 11 10 14 14 C 1.38857 * 119.92554 * 359.73688 * 13 12 11 15 15 O 1.35753 * 120.06351 * 179.97438 * 14 13 12 16 16 C 1.34827 * 117.00380 * 354.49547 * 15 14 13 17 17 H 1.08004 * 119.99733 * 5.05449 * 16 15 14 18 18 C 1.38646 * 120.00038 * 185.05217 * 16 15 14 19 19 N 1.31561 * 120.00364 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00127 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46498 * 60.00542 * 20 18 16 22 22 H 1.48495 * 109.47316 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47494 * 300.00864 * 20 18 16 24 24 C 1.38075 * 119.96482 * 90.00250 * 10 9 7 25 25 C 1.50695 * 109.47275 * 184.99991 * 4 3 2 26 26 O 1.20824 * 120.00176 * 239.99709 * 25 4 3 27 27 O 1.34227 * 120.00223 * 60.00286 * 25 4 3 28 28 C 1.45199 * 117.00509 * 179.97438 * 27 25 4 29 29 C 1.53000 * 109.47585 * 180.02562 * 28 27 25 30 30 H 1.07998 * 120.00126 * 0.27778 * 1 2 3 31 31 H 1.08004 * 120.00014 * 180.27913 * 1 2 3 32 32 H 1.07998 * 120.00126 * 179.72222 * 2 1 3 33 33 H 1.09000 * 109.47222 * 244.72443 * 3 2 1 34 34 H 1.09000 * 109.47169 * 4.72212 * 3 2 1 35 35 H 0.96997 * 119.99839 * 95.00023 * 6 4 3 36 36 H 1.08997 * 109.47479 * 300.00993 * 9 7 6 37 37 H 1.09003 * 109.46507 * 60.00274 * 9 7 6 38 38 H 1.08003 * 119.93303 * 359.97438 * 11 10 9 39 39 H 1.08004 * 119.96402 * 180.25456 * 12 11 10 40 40 H 1.07994 * 120.03412 * 179.71948 * 13 12 11 41 41 H 0.97002 * 120.00261 * 179.97438 * 19 18 16 42 42 H 1.07995 * 120.03805 * 359.96029 * 24 10 9 43 43 H 1.09001 * 109.47003 * 299.99991 * 28 27 25 44 44 H 1.09002 * 109.47100 * 59.99495 * 28 27 25 45 45 H 1.08996 * 109.46920 * 180.02562 * 29 28 27 46 46 H 1.08997 * 109.46439 * 300.00134 * 29 28 27 47 47 H 1.09001 * 109.46817 * 59.99557 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0301 1.3360 1.1855 5 1 2.4795 1.1520 2.1081 6 7 4.0504 0.2994 1.0108 7 6 3.8034 -0.9636 1.4113 8 8 2.7363 -1.2421 1.9158 9 6 4.8528 -2.0301 1.2310 10 6 4.3305 -3.3426 1.7559 11 6 4.5417 -3.6913 3.0777 12 6 4.0597 -4.8926 3.5644 13 6 3.3749 -5.7530 2.7287 14 6 3.1658 -5.4082 1.4000 15 8 2.4936 -6.2520 0.5760 16 6 2.1549 -7.4568 1.0776 17 1 2.3464 -7.6825 2.1163 18 6 1.5609 -8.4060 0.2600 19 7 1.3282 -8.1314 -1.0054 20 14 1.0924 -10.0756 0.9547 21 1 0.1187 -9.8955 2.0614 22 1 0.4790 -10.9025 -0.1153 23 1 2.3075 -10.7559 1.4704 24 6 3.6466 -4.1984 0.9155 25 6 3.6937 2.6870 1.2575 26 8 4.8957 2.7750 1.1717 27 8 2.9496 3.7927 1.4170 28 6 3.6562 5.0597 1.4785 29 6 2.6492 6.1969 1.6620 30 1 -0.5400 0.9353 -0.0045 31 1 -0.5400 -0.9353 0.0046 32 1 1.8500 -0.9353 0.0045 33 1 2.6252 1.4004 -0.9293 34 1 1.3582 2.1318 0.0846 35 1 4.9038 0.5220 0.6070 36 1 5.0900 -2.1312 0.1720 37 1 5.7523 -1.7510 1.7797 38 1 5.0811 -3.0224 3.7319 39 1 4.2226 -5.1601 4.5980 40 1 3.0027 -6.6931 3.1082 41 1 0.9129 -8.7956 -1.5775 42 1 3.4853 -3.9274 -0.1174 43 1 4.3488 5.0490 2.3201 44 1 4.2115 5.2114 0.5529 45 1 3.1797 7.1480 1.7077 46 1 1.9563 6.2078 0.8207 47 1 2.0943 6.0450 2.5878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116587232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:34 Heat of formation + Delta-G solvation = -104.842112 kcal Electronic energy + Delta-G solvation = -29740.981423 eV Core-core repulsion = 25469.462502 eV Total energy + Delta-G solvation = -4271.518921 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.20640 -39.86931 -38.81001 -37.24064 -36.55696 -35.82446 -33.71712 -32.38210 -32.25065 -31.94017 -29.90052 -29.07929 -26.92867 -25.38308 -25.15502 -23.44177 -21.85378 -21.50119 -20.83438 -20.34553 -19.81062 -18.23835 -17.68200 -17.34226 -17.16370 -16.84694 -16.44262 -15.89305 -15.54549 -15.10676 -14.81102 -14.48731 -14.36663 -14.23518 -13.92638 -13.67257 -13.43714 -13.34946 -13.24217 -13.20725 -12.88980 -12.52880 -12.39173 -12.30770 -12.13909 -11.86420 -11.76358 -11.51547 -11.22511 -11.17513 -10.99882 -10.80788 -10.74394 -10.61874 -10.57278 -10.42644 -9.86020 -9.58868 -9.29311 -9.01458 -8.78526 -8.02321 -7.16727 -6.39292 -3.98311 1.68728 1.90992 2.18967 2.43505 2.45350 2.70169 3.13828 3.16729 3.19430 3.20267 4.01075 4.10788 4.45473 4.49748 4.56677 4.65054 4.77177 4.79254 4.91899 4.96729 5.09776 5.15570 5.18165 5.24553 5.30430 5.35378 5.49105 5.51198 5.54800 5.63701 5.71269 5.79709 5.93751 5.98230 6.08869 6.16142 6.22475 6.38515 6.70480 6.76471 6.89538 6.96596 7.12036 7.23064 7.31147 7.36236 7.42292 7.49130 7.87760 8.05683 8.22201 9.06427 9.77431 10.78861 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.019422 B = 0.002114 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.326394 B =13242.193373 C =14127.846293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.146 4.146 3 C -0.096 4.096 4 C 0.161 3.839 5 H 0.128 0.872 6 N -0.726 5.726 7 C 0.518 3.482 8 O -0.505 6.505 9 C -0.092 4.092 10 C -0.033 4.033 11 C -0.196 4.196 12 C -0.075 4.075 13 C -0.230 4.230 14 C 0.154 3.846 15 O -0.179 6.179 16 C -0.390 4.390 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.865 5.865 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.174 4.174 25 C 0.464 3.536 26 O -0.503 6.503 27 O -0.351 6.351 28 C 0.061 3.939 29 C -0.153 4.153 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.408 0.592 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.269 0.731 42 H 0.114 0.886 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.907 24.700 3.350 25.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.163 4.163 3 C -0.135 4.135 4 C 0.055 3.945 5 H 0.146 0.854 6 N -0.383 5.383 7 C 0.305 3.695 8 O -0.378 6.378 9 C -0.132 4.132 10 C -0.034 4.034 11 C -0.215 4.215 12 C -0.093 4.093 13 C -0.249 4.249 14 C 0.101 3.899 15 O -0.083 6.083 16 C -0.467 4.467 17 H 0.108 0.892 18 C -0.165 4.165 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.196 1.196 24 C -0.193 4.193 25 C 0.306 3.694 26 O -0.390 6.390 27 O -0.268 6.268 28 C -0.012 4.012 29 C -0.211 4.211 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.137 0.863 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.245 0.755 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.143 0.857 41 H 0.079 0.921 42 H 0.132 0.868 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.087 0.913 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.297 24.457 3.263 25.045 hybrid contribution 0.345 -0.600 0.283 0.747 sum 4.642 23.857 3.546 24.562 Atomic orbital electron populations 1.23798 0.95834 1.01714 1.01223 1.22877 0.96174 0.97738 0.99552 1.21142 0.97631 0.97943 0.96771 1.20340 0.89492 0.81740 1.02971 0.85427 1.45899 1.18944 1.08045 1.65418 1.20797 0.89177 0.82151 0.77356 1.90794 1.25072 1.80709 1.41230 1.20577 0.97265 0.91555 1.03770 1.18624 0.98204 0.92795 0.93740 1.20352 1.07856 0.98450 0.94831 1.20679 0.96624 0.93840 0.98152 1.21174 1.07237 1.02309 0.94229 1.19275 0.90201 0.90711 0.89700 1.83974 1.62263 1.24533 1.37544 1.21258 1.40810 0.88157 0.96460 0.89205 1.25263 0.96775 0.99290 0.95198 1.70032 1.40001 1.35178 1.04766 0.85800 0.79044 0.80277 0.78407 1.19546 1.20330 1.19554 1.19931 1.05130 0.94511 0.99741 1.23716 0.86292 0.87006 0.72388 1.90669 1.15730 1.87146 1.45452 1.86503 1.41768 1.15675 1.82805 1.23104 0.95350 0.80091 1.02698 1.21820 0.99566 0.96040 1.03625 0.89019 0.88126 0.86253 0.90255 0.89417 0.75505 0.88026 0.88153 0.87952 0.87519 0.85658 0.92071 0.86841 0.91034 0.90990 0.90075 0.91293 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.35 14.32 29.02 0.42 -1.93 16 2 C -0.15 -1.87 7.94 -36.03 -0.29 -2.16 16 3 C -0.10 -0.94 5.30 -27.89 -0.15 -1.09 16 4 C 0.16 1.66 2.76 -69.09 -0.19 1.47 16 5 H 0.13 1.44 7.58 -51.93 -0.39 1.05 16 6 N -0.73 -7.77 4.92 -54.93 -0.27 -8.04 16 7 C 0.52 7.11 6.61 -10.98 -0.07 7.04 16 8 O -0.51 -8.92 13.22 5.56 0.07 -8.84 16 9 C -0.09 -1.20 5.83 -29.04 -0.17 -1.37 16 10 C -0.03 -0.59 4.37 -104.65 -0.46 -1.05 16 11 C -0.20 -3.52 9.70 -39.53 -0.38 -3.91 16 12 C -0.07 -1.44 10.04 -39.61 -0.40 -1.83 16 13 C -0.23 -5.19 9.17 -39.39 -0.36 -5.56 16 14 C 0.15 3.85 6.65 -39.11 -0.26 3.59 16 15 O -0.18 -5.23 9.76 0.05 0.00 -5.23 16 16 C -0.39 -11.13 9.49 30.88 0.29 -10.83 16 17 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.69 13.67 55.48 0.76 -24.93 16 20 Si 0.94 20.87 29.55 -169.99 -5.02 15.85 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 C -0.17 -3.75 9.65 -39.39 -0.38 -4.13 16 25 C 0.46 4.61 7.32 36.00 0.26 4.88 16 26 O -0.50 -5.85 15.59 -18.75 -0.29 -6.14 16 27 O -0.35 -3.08 10.03 -39.25 -0.39 -3.47 16 28 C 0.06 0.40 6.19 37.16 0.23 0.63 16 29 C -0.15 -0.66 10.29 37.16 0.38 -0.28 16 30 H 0.09 0.93 7.84 -52.49 -0.41 0.52 16 31 H 0.10 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.12 1.86 5.70 -52.49 -0.30 1.56 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.73 7.65 -51.93 -0.40 0.34 16 35 H 0.41 3.68 7.79 -40.82 -0.32 3.36 16 36 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 37 H 0.10 1.04 8.08 -51.93 -0.42 0.62 16 38 H 0.10 1.57 8.06 -52.48 -0.42 1.14 16 39 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 40 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.11 2.37 8.06 -52.49 -0.42 1.94 16 43 H 0.07 0.47 8.13 -51.93 -0.42 0.04 16 44 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 45 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 46 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 402.11 15.07 6.06 6.06 Total: -1.00 -34.46 402.11 -7.29 -41.75 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -6.59 Total: 8.56 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -1.62 Total: -15.56 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.49 Total: -32.97 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.61 Total: -23.69 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.46 -7.29 -41.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116587232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.092 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds