Wall clock time and date at job start Wed Apr 1 2020 04:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00091 * 2 1 4 4 C 1.52995 * 109.47474 * 124.72301 * 3 2 1 5 5 H 1.09003 * 109.47046 * 305.00173 * 4 3 2 6 6 N 1.46502 * 109.46928 * 65.00036 * 4 3 2 7 7 C 1.34781 * 119.99928 * 274.99723 * 6 4 3 8 8 O 1.21278 * 120.00040 * 0.02562 * 7 6 4 9 9 C 1.50702 * 120.00044 * 179.97438 * 7 6 4 10 10 C 1.50693 * 109.47167 * 180.02562 * 9 7 6 11 11 C 1.38321 * 119.96593 * 269.72693 * 10 9 7 12 12 C 1.38283 * 120.13775 * 179.76521 * 11 10 9 13 13 C 1.38124 * 120.07077 * 0.51465 * 12 11 10 14 14 C 1.38857 * 119.92554 * 359.73688 * 13 12 11 15 15 O 1.35753 * 120.06351 * 179.97438 * 14 13 12 16 16 C 1.34827 * 117.00380 * 354.49547 * 15 14 13 17 17 H 1.08004 * 119.99733 * 5.05449 * 16 15 14 18 18 C 1.38646 * 120.00038 * 185.05217 * 16 15 14 19 19 N 1.31561 * 120.00364 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00127 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46498 * 60.00542 * 20 18 16 22 22 H 1.48495 * 109.47316 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47494 * 300.00864 * 20 18 16 24 24 C 1.38075 * 119.96482 * 90.00250 * 10 9 7 25 25 C 1.50695 * 109.47275 * 184.99991 * 4 3 2 26 26 O 1.20824 * 120.00176 * 239.99709 * 25 4 3 27 27 O 1.34227 * 120.00223 * 60.00286 * 25 4 3 28 28 C 1.45199 * 117.00509 * 179.97438 * 27 25 4 29 29 C 1.53000 * 109.47585 * 180.02562 * 28 27 25 30 30 H 1.07998 * 120.00126 * 0.27778 * 1 2 3 31 31 H 1.08004 * 120.00014 * 180.27913 * 1 2 3 32 32 H 1.07998 * 120.00126 * 179.72222 * 2 1 3 33 33 H 1.09000 * 109.47222 * 244.72443 * 3 2 1 34 34 H 1.09000 * 109.47169 * 4.72212 * 3 2 1 35 35 H 0.96997 * 119.99839 * 95.00023 * 6 4 3 36 36 H 1.08997 * 109.47479 * 300.00993 * 9 7 6 37 37 H 1.09003 * 109.46507 * 60.00274 * 9 7 6 38 38 H 1.08003 * 119.93303 * 359.97438 * 11 10 9 39 39 H 1.08004 * 119.96402 * 180.25456 * 12 11 10 40 40 H 1.07994 * 120.03412 * 179.71948 * 13 12 11 41 41 H 0.97002 * 120.00261 * 179.97438 * 19 18 16 42 42 H 1.07995 * 120.03805 * 359.96029 * 24 10 9 43 43 H 1.09001 * 109.47003 * 299.99991 * 28 27 25 44 44 H 1.09002 * 109.47100 * 59.99495 * 28 27 25 45 45 H 1.08996 * 109.46920 * 180.02562 * 29 28 27 46 46 H 1.08997 * 109.46439 * 300.00134 * 29 28 27 47 47 H 1.09001 * 109.46817 * 59.99557 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0301 1.3360 1.1855 5 1 2.4795 1.1520 2.1081 6 7 4.0504 0.2994 1.0108 7 6 3.8034 -0.9636 1.4113 8 8 2.7363 -1.2421 1.9158 9 6 4.8528 -2.0301 1.2310 10 6 4.3305 -3.3426 1.7559 11 6 4.5417 -3.6913 3.0777 12 6 4.0597 -4.8926 3.5644 13 6 3.3749 -5.7530 2.7287 14 6 3.1658 -5.4082 1.4000 15 8 2.4936 -6.2520 0.5760 16 6 2.1549 -7.4568 1.0776 17 1 2.3464 -7.6825 2.1163 18 6 1.5609 -8.4060 0.2600 19 7 1.3282 -8.1314 -1.0054 20 14 1.0924 -10.0756 0.9547 21 1 0.1187 -9.8955 2.0614 22 1 0.4790 -10.9025 -0.1153 23 1 2.3075 -10.7559 1.4704 24 6 3.6466 -4.1984 0.9155 25 6 3.6937 2.6870 1.2575 26 8 4.8957 2.7750 1.1717 27 8 2.9496 3.7927 1.4170 28 6 3.6562 5.0597 1.4785 29 6 2.6492 6.1969 1.6620 30 1 -0.5400 0.9353 -0.0045 31 1 -0.5400 -0.9353 0.0046 32 1 1.8500 -0.9353 0.0045 33 1 2.6252 1.4004 -0.9293 34 1 1.3582 2.1318 0.0846 35 1 4.9038 0.5220 0.6070 36 1 5.0900 -2.1312 0.1720 37 1 5.7523 -1.7510 1.7797 38 1 5.0811 -3.0224 3.7319 39 1 4.2226 -5.1601 4.5980 40 1 3.0027 -6.6931 3.1082 41 1 0.9129 -8.7956 -1.5775 42 1 3.4853 -3.9274 -0.1174 43 1 4.3488 5.0490 2.3201 44 1 4.2115 5.2114 0.5529 45 1 3.1797 7.1480 1.7077 46 1 1.9563 6.2078 0.8207 47 1 2.0943 6.0450 2.5878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116587232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:33 Heat of formation + Delta-G solvation = -126.557559 kcal Electronic energy + Delta-G solvation = -29741.923075 eV Core-core repulsion = 25469.462502 eV Total energy + Delta-G solvation = -4272.460573 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.03038 -41.06460 -40.40560 -38.35692 -37.87103 -36.86735 -34.73364 -34.32211 -33.44598 -32.72730 -31.05941 -30.61612 -28.29645 -27.21739 -26.13995 -24.07190 -23.27619 -22.89308 -21.96485 -21.45688 -20.82645 -19.56058 -19.06638 -18.71404 -18.16719 -17.91398 -17.41086 -16.93635 -16.70582 -16.40640 -16.37124 -16.08430 -15.52354 -15.48548 -15.14230 -14.97500 -14.84889 -14.38642 -14.33380 -14.09600 -13.96924 -13.71076 -13.62093 -13.54144 -12.96010 -12.93429 -12.84591 -12.71954 -12.48437 -12.44002 -12.38509 -12.21972 -12.13603 -12.08312 -11.55523 -11.50227 -11.19726 -11.03087 -10.78355 -10.58783 -9.99734 -9.62812 -8.96439 -8.45838 -6.14283 0.51794 0.77252 0.90159 1.21321 1.34153 1.45013 1.46631 1.50664 1.64167 2.18163 2.23266 2.85639 3.18413 3.39110 3.45471 3.78460 3.81324 3.94892 4.03149 4.06059 4.06438 4.10106 4.12908 4.33304 4.35776 4.38370 4.44268 4.58864 4.65146 4.66077 4.75403 4.79902 4.83838 4.94251 5.04727 5.07698 5.11690 5.13799 5.23728 5.32469 5.37616 5.66463 5.72497 5.74275 5.76891 5.92091 6.03832 6.23934 6.42950 6.51275 6.98611 7.20654 7.80381 8.77336 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.019422 B = 0.002114 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.326394 B =13242.193373 C =14127.846293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.153 4.153 3 C -0.087 4.087 4 C 0.162 3.838 5 H 0.119 0.881 6 N -0.710 5.710 7 C 0.522 3.478 8 O -0.551 6.551 9 C -0.091 4.091 10 C -0.023 4.023 11 C -0.180 4.180 12 C -0.074 4.074 13 C -0.246 4.246 14 C 0.112 3.888 15 O -0.234 6.234 16 C -0.414 4.414 17 H 0.100 0.900 18 C -0.024 4.024 19 N -0.921 5.921 20 Si 1.019 2.981 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.256 1.256 24 C -0.189 4.189 25 C 0.474 3.526 26 O -0.520 6.520 27 O -0.353 6.353 28 C 0.054 3.946 29 C -0.149 4.149 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.420 0.580 36 H 0.122 0.878 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.117 0.883 41 H 0.272 0.728 42 H 0.107 0.893 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.100 0.900 46 H 0.070 0.930 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.541 27.284 5.188 28.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.171 4.171 3 C -0.125 4.125 4 C 0.055 3.945 5 H 0.137 0.863 6 N -0.367 5.367 7 C 0.310 3.690 8 O -0.428 6.428 9 C -0.130 4.130 10 C -0.024 4.024 11 C -0.198 4.198 12 C -0.092 4.092 13 C -0.266 4.266 14 C 0.062 3.938 15 O -0.141 6.141 16 C -0.490 4.490 17 H 0.117 0.883 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.838 3.162 21 H -0.183 1.183 22 H -0.195 1.195 23 H -0.180 1.180 24 C -0.208 4.208 25 C 0.317 3.683 26 O -0.408 6.408 27 O -0.269 6.269 28 C -0.019 4.019 29 C -0.206 4.206 30 H 0.138 0.862 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.258 0.742 36 H 0.140 0.860 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.135 0.865 41 H 0.081 0.919 42 H 0.125 0.875 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.119 0.881 46 H 0.089 0.911 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.981 27.117 5.120 28.237 hybrid contribution -0.010 -1.065 -0.171 1.079 sum 5.971 26.052 4.949 27.182 Atomic orbital electron populations 1.23903 0.95914 1.02141 1.01134 1.22870 0.96411 0.98068 0.99766 1.21096 0.97719 0.96657 0.97070 1.20312 0.89351 0.81973 1.02834 0.86319 1.45697 1.19492 1.07272 1.64269 1.20802 0.88470 0.82968 0.76761 1.90796 1.26794 1.81495 1.43683 1.20684 0.98128 0.88588 1.05629 1.19116 0.95849 0.93944 0.93504 1.20964 1.05747 0.98033 0.95077 1.21120 0.95106 0.93545 0.99424 1.21289 1.08374 1.02998 0.93899 1.19881 0.91605 0.91557 0.90786 1.83934 1.65093 1.25573 1.39478 1.21766 1.41299 0.88696 0.97222 0.88312 1.26592 0.96406 1.03652 0.95484 1.70185 1.42226 1.36977 1.06580 0.84655 0.79242 0.74416 0.77929 1.18350 1.19500 1.18048 1.20193 1.05954 0.94339 1.00359 1.23438 0.85868 0.87065 0.71947 1.90666 1.16338 1.87397 1.46434 1.86500 1.41924 1.16108 1.82322 1.23382 0.96069 0.79536 1.02962 1.21846 0.99266 0.95911 1.03585 0.86158 0.90198 0.89410 0.89011 0.87392 0.74161 0.85960 0.84048 0.83635 0.83842 0.86542 0.91886 0.87524 0.91053 0.90575 0.88145 0.91114 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.86 14.32 67.78 0.97 -3.89 16 2 C -0.15 -3.94 7.94 25.65 0.20 -3.74 16 3 C -0.09 -1.56 5.30 29.85 0.16 -1.40 16 4 C 0.16 3.03 2.76 44.24 0.12 3.15 16 5 H 0.12 2.52 7.58 -2.39 -0.02 2.51 16 6 N -0.71 -13.65 4.92 -446.10 -2.19 -15.84 16 7 C 0.52 13.40 6.61 87.66 0.58 13.97 16 8 O -0.55 -19.22 13.22 -3.02 -0.04 -19.26 16 9 C -0.09 -2.10 5.83 29.10 0.17 -1.93 16 10 C -0.02 -0.81 4.37 -19.89 -0.09 -0.90 16 11 C -0.18 -5.88 9.70 22.30 0.22 -5.66 16 12 C -0.07 -2.70 10.04 22.25 0.22 -2.48 16 13 C -0.25 -11.38 9.17 22.39 0.21 -11.18 16 14 C 0.11 5.87 6.65 22.58 0.15 6.02 16 15 O -0.23 -14.69 9.76 -22.75 -0.22 -14.91 16 16 C -0.41 -25.01 9.49 67.92 0.64 -24.36 16 17 H 0.10 5.50 5.20 -2.91 -0.02 5.49 16 18 C -0.02 -1.42 5.49 84.83 0.47 -0.95 16 19 N -0.92 -58.00 13.67 21.61 0.30 -57.71 16 20 Si 1.02 44.15 29.55 68.60 2.03 46.18 16 21 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 24 C -0.19 -8.45 9.65 22.39 0.22 -8.23 16 25 C 0.47 8.33 7.32 71.23 0.52 8.85 16 26 O -0.52 -10.80 15.59 21.97 0.34 -10.46 16 27 O -0.35 -5.35 10.03 -51.38 -0.52 -5.87 16 28 C 0.05 0.58 6.19 71.98 0.45 1.02 16 29 C -0.15 -0.92 10.29 71.98 0.74 -0.18 16 30 H 0.12 2.27 7.84 -2.91 -0.02 2.24 16 31 H 0.08 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.09 2.86 5.70 -2.91 -0.02 2.84 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.11 1.52 7.65 -2.39 -0.02 1.50 16 35 H 0.42 6.32 7.79 -92.71 -0.72 5.59 16 36 H 0.12 2.38 8.08 -2.39 -0.02 2.36 16 37 H 0.14 2.18 8.08 -2.39 -0.02 2.16 16 38 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 39 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 40 H 0.12 5.45 5.64 -2.91 -0.02 5.43 16 41 H 0.27 15.70 8.31 -92.71 -0.77 14.92 16 42 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 43 H 0.07 0.78 8.13 -2.39 -0.02 0.76 16 44 H 0.08 0.77 8.13 -2.39 -0.02 0.75 16 45 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 46 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 47 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -82.01 402.11 5.91 -76.10 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: 0.27 Total: 33.65 kcal Atomic # 6 Polarization: -37.83 SS G_CDS: 5.95 Total: -31.88 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -1.90 Total: -73.55 kcal Atomic # 8 Polarization: -50.06 SS G_CDS: -0.43 Total: -50.49 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -82.01 5.91 -76.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116587232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.457 kcal (2) G-P(sol) polarization free energy of solvation -82.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds