Wall clock time and date at job start Wed Apr 1 2020 05:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00322 * 2 1 4 4 O 1.20822 * 119.99576 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00378 * 179.97438 * 3 2 1 6 6 C 1.53005 * 109.47177 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47177 * 184.69427 * 6 5 3 8 8 H 1.09005 * 109.67561 * 299.63460 * 7 6 5 9 9 C 1.53297 * 109.71400 * 60.16814 * 7 6 5 10 10 O 1.42964 * 109.22281 * 172.04101 * 9 7 6 11 11 C 1.42957 * 114.16812 * 297.42236 * 10 9 7 12 12 C 1.53300 * 109.22377 * 62.58378 * 11 10 9 13 13 N 1.47149 * 109.68241 * 179.11681 * 7 6 5 14 14 C 1.34781 * 120.97798 * 9.72598 * 13 7 6 15 15 O 1.21541 * 120.00333 * 354.20758 * 14 13 7 16 16 C 1.47889 * 119.99321 * 174.20899 * 14 13 7 17 17 C 1.39921 * 120.02893 * 327.43699 * 16 14 13 18 18 C 1.38330 * 120.35935 * 179.97438 * 17 16 14 19 19 C 1.37757 * 120.41130 * 0.02562 * 18 17 16 20 20 C 1.40748 * 120.03749 * 0.02562 * 19 18 17 21 21 C 1.41445 * 120.17468 * 180.02562 * 20 19 18 22 22 H 1.08001 * 119.99715 * 34.34229 * 21 20 19 23 23 C 1.39931 * 119.99847 * 214.34392 * 21 20 19 24 24 N 1.30824 * 120.00329 * 356.32254 * 23 21 20 25 25 Si 1.86798 * 120.00009 * 176.32754 * 23 21 20 26 26 H 1.48495 * 109.47163 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47475 * 119.99980 * 25 23 21 28 28 H 1.48497 * 109.47082 * 239.99769 * 25 23 21 29 29 C 1.39003 * 120.02191 * 147.16510 * 16 14 13 30 30 H 1.09005 * 109.47303 * 60.00418 * 1 2 3 31 31 H 1.09009 * 109.47331 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47377 * 299.99567 * 1 2 3 33 33 H 1.09000 * 109.47017 * 60.00272 * 5 3 2 34 34 H 1.09000 * 109.47498 * 300.00257 * 5 3 2 35 35 H 1.08998 * 109.47154 * 64.69366 * 6 5 3 36 36 H 1.09004 * 109.46869 * 304.69041 * 6 5 3 37 37 H 1.09008 * 109.50704 * 52.12187 * 9 7 6 38 38 H 1.08993 * 109.51408 * 291.96887 * 9 7 6 39 39 H 1.09002 * 109.51378 * 182.50072 * 11 10 9 40 40 H 1.08999 * 109.51498 * 302.60771 * 11 10 9 41 41 H 1.08995 * 109.68818 * 67.41290 * 12 11 10 42 42 H 1.09000 * 109.68226 * 187.97570 * 12 11 10 43 43 H 1.07999 * 119.82001 * 0.02562 * 17 16 14 44 44 H 1.07997 * 119.79233 * 179.97438 * 18 17 16 45 45 H 1.08002 * 119.97853 * 180.02562 * 19 18 17 46 46 H 0.97001 * 120.00821 * 180.02562 * 24 23 21 47 47 H 1.07991 * 120.19991 * 359.97438 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5662 1.2748 0.0006 6 6 4.0001 2.7421 0.0011 7 6 5.5234 2.8236 -0.1164 8 1 5.9845 2.3156 0.7307 9 6 5.9773 2.1638 -1.4235 10 8 7.3732 2.4071 -1.6136 11 6 7.7127 3.7887 -1.7539 12 6 7.3478 4.5316 -0.4636 13 7 5.9441 4.2335 -0.1376 14 6 5.0697 5.2225 0.1340 15 8 3.8931 4.9656 0.2978 16 6 5.5420 6.6205 0.2327 17 6 6.8252 6.8933 0.7193 18 6 7.2742 8.1983 0.8141 19 6 6.4635 9.2442 0.4311 20 6 5.1693 8.9893 -0.0598 21 6 4.3347 10.0609 -0.4543 22 1 4.7648 10.9411 -0.9091 23 6 2.9519 9.9807 -0.2554 24 7 2.4231 8.8865 0.2288 25 14 1.8610 11.4359 -0.6815 26 1 2.6975 12.5442 -1.2079 27 1 0.8724 11.0286 -1.7120 28 1 1.1459 11.8921 0.5374 29 6 4.7136 7.6641 -0.1632 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 3.9563 0.7806 -0.8892 34 1 3.9557 0.7809 0.8908 35 1 3.6815 3.2148 0.9301 36 1 3.5425 3.2565 -0.8440 37 1 5.4172 2.5860 -2.2580 38 1 5.7988 1.0899 -1.3704 39 1 8.7828 3.8837 -1.9384 40 1 7.1596 4.2165 -2.5901 41 1 7.9925 4.1956 0.3485 42 1 7.4706 5.6047 -0.6105 43 1 7.4689 6.0806 1.0219 44 1 8.2661 8.3984 1.1914 45 1 6.8214 10.2603 0.5076 46 1 1.4645 8.8306 0.3664 47 1 3.7243 7.4579 -0.5439 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188677907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:49 Heat of formation + Delta-G solvation = -140.291913 kcal Electronic energy + Delta-G solvation = -31170.879503 eV Core-core repulsion = 26897.823363 eV Total energy + Delta-G solvation = -4273.056140 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.95000 -41.38075 -39.58997 -38.76700 -37.68277 -36.02800 -35.86942 -35.03434 -32.03971 -31.33538 -31.26714 -29.19004 -28.18259 -27.34666 -26.29325 -24.54061 -23.83578 -22.63486 -22.33611 -21.53074 -20.46744 -19.23862 -18.62915 -17.93751 -17.77313 -17.55379 -17.31324 -17.13748 -16.76080 -16.59421 -16.51865 -15.95514 -15.68447 -15.34759 -15.19253 -14.79616 -14.62436 -14.46259 -14.25808 -14.05324 -13.87173 -13.60324 -13.51513 -13.27051 -12.99854 -12.89438 -12.84895 -12.62217 -12.48377 -12.28669 -12.16797 -11.95271 -11.82980 -11.74865 -11.72196 -11.55136 -11.47172 -11.17835 -11.13006 -10.10642 -9.58892 -9.34029 -9.24930 -8.53021 -6.45051 0.43997 0.99726 1.16090 1.34266 1.42682 1.50635 1.66054 1.90563 2.04662 2.19537 2.77689 2.84841 3.57515 3.60420 3.62121 3.74390 3.95014 3.99938 4.04655 4.13362 4.25955 4.26475 4.29390 4.31390 4.45303 4.46363 4.49896 4.58373 4.67157 4.68409 4.72027 4.82756 4.89940 4.91787 5.08958 5.10480 5.18069 5.30205 5.34021 5.37345 5.52477 5.66206 5.83257 5.92612 6.07171 6.09175 6.27842 6.35361 6.61725 6.72641 6.90290 6.95225 7.26597 8.38190 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.008914 B = 0.003600 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3140.411571 B = 7776.524353 C =10420.694491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.454 3.546 4 O -0.547 6.547 5 C -0.112 4.112 6 C -0.087 4.087 7 C 0.115 3.885 8 H 0.106 0.894 9 C 0.051 3.949 10 O -0.381 6.381 11 C 0.047 3.953 12 C 0.056 3.944 13 N -0.611 5.611 14 C 0.557 3.443 15 O -0.564 6.564 16 C -0.141 4.141 17 C -0.189 4.189 18 C -0.102 4.102 19 C -0.202 4.202 20 C 0.062 3.938 21 C -0.498 4.498 22 H 0.082 0.918 23 C 0.021 3.979 24 N -0.845 5.845 25 Si 0.988 3.012 26 H -0.249 1.249 27 H -0.272 1.272 28 H -0.269 1.269 29 C -0.121 4.121 30 H 0.054 0.946 31 H 0.139 0.861 32 H 0.054 0.946 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.043 0.957 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.111 0.889 46 H 0.280 0.720 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.052 -18.214 -1.997 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.299 3.701 4 O -0.436 6.436 5 C -0.150 4.150 6 C -0.126 4.126 7 C 0.012 3.988 8 H 0.124 0.876 9 C -0.026 4.026 10 O -0.299 6.299 11 C -0.030 4.030 12 C -0.066 4.066 13 N -0.345 5.345 14 C 0.348 3.652 15 O -0.444 6.444 16 C -0.144 4.144 17 C -0.208 4.208 18 C -0.120 4.120 19 C -0.222 4.222 20 C 0.060 3.940 21 C -0.529 4.529 22 H 0.100 0.900 23 C -0.191 4.191 24 N -0.473 5.473 25 Si 0.809 3.191 26 H -0.172 1.172 27 H -0.197 1.197 28 H -0.194 1.194 29 C -0.142 4.142 30 H 0.073 0.927 31 H 0.157 0.843 32 H 0.072 0.928 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.062 0.938 41 H 0.118 0.882 42 H 0.130 0.870 43 H 0.161 0.839 44 H 0.160 0.840 45 H 0.129 0.871 46 H 0.090 0.910 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.129 -18.317 -1.863 19.744 hybrid contribution -1.796 1.407 -0.008 2.281 sum 5.334 -16.910 -1.871 17.830 Atomic orbital electron populations 1.23507 0.75382 1.05708 1.01995 1.86485 1.24531 1.32608 1.83950 1.24446 0.93482 0.80937 0.71252 1.90772 1.68369 1.38028 1.46443 1.21696 0.85657 0.98879 1.08723 1.21625 0.93614 0.93582 1.03734 1.22113 0.94748 0.81136 1.00794 0.87627 1.23264 0.82151 1.02829 0.94347 1.87928 1.23917 1.25041 1.93063 1.23165 1.03271 0.81273 0.95282 1.23229 0.80405 1.03803 0.99153 1.48080 1.11060 1.05531 1.69818 1.18914 0.85043 0.85865 0.75368 1.90826 1.18557 1.83483 1.51495 1.19853 0.96713 0.91677 1.06177 1.21165 0.94298 0.97479 1.07839 1.20978 0.99611 0.91994 0.99384 1.21541 0.96057 0.98783 1.05781 1.17986 0.92873 0.92408 0.90765 1.19839 0.92109 1.02992 1.37994 0.89972 1.26862 1.00083 0.99653 0.92487 1.69914 1.13744 1.28252 1.35392 0.85069 0.77663 0.77832 0.78581 1.17190 1.19728 1.19417 1.21566 0.98514 0.92194 1.01921 0.92669 0.84330 0.92761 0.84305 0.84160 0.92010 0.93821 0.93832 0.83871 0.84385 0.93815 0.88249 0.87012 0.83907 0.83975 0.87135 0.91002 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.55 113.37 1.20 1.69 16 2 O -0.36 -8.01 10.56 -51.41 -0.54 -8.55 16 3 C 0.45 12.63 7.96 71.23 0.57 13.20 16 4 O -0.55 -21.47 15.67 21.98 0.34 -21.13 16 5 C -0.11 -2.25 5.60 29.85 0.17 -2.09 16 6 C -0.09 -2.70 2.52 30.60 0.08 -2.63 16 7 C 0.11 2.88 3.20 44.97 0.14 3.03 16 8 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 9 C 0.05 1.01 5.69 72.08 0.41 1.42 16 10 O -0.38 -7.87 10.74 -148.98 -1.60 -9.47 16 11 C 0.05 0.95 6.98 72.08 0.50 1.45 16 12 C 0.06 1.33 4.89 86.35 0.42 1.76 16 13 N -0.61 -19.48 3.02 -796.83 -2.41 -21.89 16 14 C 0.56 24.63 7.35 86.80 0.64 25.26 16 15 O -0.56 -29.53 12.31 -3.84 -0.05 -29.58 16 16 C -0.14 -6.64 5.36 -20.13 -0.11 -6.75 16 17 C -0.19 -7.20 7.40 22.70 0.17 -7.03 16 18 C -0.10 -3.87 10.01 22.18 0.22 -3.65 16 19 C -0.20 -9.26 9.78 22.77 0.22 -9.04 16 20 C 0.06 3.36 5.55 -21.32 -0.12 3.24 16 21 C -0.50 -27.59 9.04 23.47 0.21 -27.38 16 22 H 0.08 4.28 7.85 -2.91 -0.02 4.26 16 23 C 0.02 1.12 5.42 85.25 0.46 1.58 16 24 N -0.85 -49.76 10.62 21.82 0.23 -49.53 16 25 Si 0.99 41.36 29.56 68.60 2.03 43.39 16 26 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 29 C -0.12 -6.80 8.22 23.01 0.19 -6.61 16 30 H 0.05 1.08 8.13 -2.38 -0.02 1.07 16 31 H 0.14 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.05 1.08 8.13 -2.39 -0.02 1.06 16 33 H 0.14 1.76 6.40 -2.39 -0.02 1.74 16 34 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.06 2.46 6.35 -2.39 -0.02 2.44 16 36 H 0.04 1.72 7.03 -2.38 -0.02 1.70 16 37 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.14 1.67 6.81 -2.39 -0.02 1.65 16 39 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.10 1.90 7.93 -2.39 -0.02 1.88 16 42 H 0.11 3.01 4.57 -2.39 -0.01 3.00 16 43 H 0.14 4.26 5.68 -2.91 -0.02 4.24 16 44 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 45 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 46 H 0.28 15.43 8.30 -92.71 -0.77 14.67 16 47 H 0.10 6.22 6.06 -2.91 -0.02 6.21 16 Total: -1.00 -81.66 377.53 4.38 -77.28 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 1.00 Total: 32.02 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 5.37 Total: -12.53 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -2.17 Total: -71.42 kcal Atomic # 8 Polarization: -66.89 SS G_CDS: -1.85 Total: -68.73 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -81.66 4.38 -77.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188677907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.011 kcal (2) G-P(sol) polarization free energy of solvation -81.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds