Wall clock time and date at job start Wed Apr 1 2020 05:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00385 * 2 1 4 4 H 1.09005 * 110.34802 * 27.86011 * 3 2 1 5 5 C 1.53991 * 110.31267 * 265.71685 * 3 2 1 6 6 N 1.47898 * 107.05809 * 242.30994 * 5 3 2 7 7 C 1.46909 * 110.99728 * 214.15477 * 6 5 3 8 8 C 1.50699 * 109.46857 * 307.39268 * 7 6 5 9 9 O 1.21295 * 120.00215 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99898 * 180.02562 * 8 7 6 11 11 C 1.37101 * 119.99891 * 180.02562 * 10 8 7 12 12 H 1.07998 * 120.00304 * 359.97438 * 11 10 8 13 13 C 1.38957 * 119.99666 * 179.97438 * 11 10 8 14 14 N 1.31408 * 119.99719 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00051 * 0.02562 * 13 11 10 16 16 H 1.48491 * 109.47182 * 89.99926 * 15 13 11 17 17 H 1.48499 * 109.46719 * 209.99847 * 15 13 11 18 18 H 1.48504 * 109.46866 * 329.99516 * 15 13 11 19 19 C 1.48534 * 105.82182 * 334.66423 * 6 5 3 20 20 C 1.54598 * 110.30978 * 149.99978 * 3 2 1 21 21 H 1.08992 * 110.87872 * 22.44355 * 20 3 2 22 22 N 1.46503 * 110.72324 * 259.23286 * 20 3 2 23 23 C 1.34778 * 120.00193 * 160.04206 * 22 20 3 24 24 O 1.21285 * 119.99578 * 0.02562 * 23 22 20 25 25 C 1.50695 * 120.00347 * 179.97438 * 23 22 20 26 26 H 1.08999 * 115.55804 * 34.31941 * 25 23 22 27 27 C 1.53002 * 117.50044 * 180.02562 * 25 23 22 28 28 C 1.53000 * 60.02940 * 107.50594 * 27 25 23 29 29 F 1.39901 * 117.49487 * 107.47899 * 28 27 25 30 30 F 1.39901 * 117.50046 * 252.49778 * 28 27 25 31 31 H 1.09001 * 109.47237 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46739 * 299.99864 * 1 2 3 33 33 H 1.09002 * 109.46775 * 59.99818 * 1 2 3 34 34 H 1.09000 * 109.91994 * 122.95022 * 5 3 2 35 35 H 1.09005 * 110.07842 * 1.75153 * 5 3 2 36 36 H 1.08996 * 109.46987 * 67.39607 * 7 6 5 37 37 H 1.09001 * 109.46796 * 187.39963 * 7 6 5 38 38 H 0.96998 * 119.99629 * 359.97438 * 10 8 7 39 39 H 0.97003 * 120.00165 * 180.02562 * 14 13 11 40 40 H 1.09001 * 110.66689 * 280.77410 * 19 6 5 41 41 H 1.08993 * 110.81006 * 157.70934 * 19 6 5 42 42 H 0.97001 * 119.99897 * 340.04612 * 22 20 3 43 43 H 1.09002 * 117.49918 * 0.02562 * 27 25 23 44 44 H 1.09002 * 117.49754 * 215.00777 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3391 2.0192 0.4776 5 6 2.3263 1.7498 -1.4401 6 7 3.7909 1.9370 -1.5249 7 6 4.1290 3.0387 -2.4361 8 6 3.4485 2.8200 -3.7627 9 8 2.7501 1.8429 -3.9324 10 7 3.6158 3.7102 -4.7607 11 6 2.9962 3.5116 -5.9675 12 1 2.3744 2.6415 -6.1186 13 6 3.1683 4.4297 -6.9963 14 7 2.5749 4.2390 -8.1531 15 14 4.2443 5.9342 -6.7352 16 1 5.6427 5.6154 -7.1200 17 1 3.7430 7.0527 -7.5734 18 1 4.2026 6.3303 -5.3046 19 6 4.2421 2.2333 -0.1411 20 6 3.3756 1.2848 0.7249 21 1 3.7956 0.2791 0.7337 22 7 3.2460 1.8023 2.0894 23 6 4.1831 1.5101 3.0129 24 8 5.1341 0.8191 2.7142 25 6 4.0501 2.0429 4.4162 26 1 3.0307 2.1250 4.7934 27 6 5.1469 1.6763 5.4180 28 6 5.0583 3.1018 4.8692 29 9 4.6008 4.1002 5.7358 30 9 6.0333 3.5014 3.9489 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8900 34 1 1.8186 2.6893 -1.6587 35 1 2.0084 0.9831 -2.1467 36 1 3.7924 3.9820 -2.0061 37 1 5.2086 3.0707 -2.5825 38 1 4.1739 4.4918 -4.6249 39 1 2.6953 4.8797 -8.8714 40 1 4.0445 3.2746 0.1133 41 1 5.3008 2.0037 -0.0215 42 1 2.4856 2.3552 2.3281 43 1 5.9650 1.0501 5.0619 44 1 4.8490 1.5166 6.4543 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212218686.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:57 Heat of formation + Delta-G solvation = -182.449387 kcal Electronic energy + Delta-G solvation = -30857.333092 eV Core-core repulsion = 26060.512089 eV Total energy + Delta-G solvation = -4796.821003 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.77837 -48.46740 -41.56018 -40.64704 -39.67881 -37.77767 -36.66524 -36.08326 -35.50776 -33.79394 -31.88811 -29.48581 -28.56428 -27.29470 -26.21375 -25.05964 -23.57497 -22.59622 -22.21531 -21.43360 -21.29315 -20.18510 -19.46759 -18.44216 -18.16855 -17.80305 -17.42208 -17.23947 -17.00669 -16.78287 -16.70662 -15.98149 -15.85008 -15.71693 -15.68078 -15.13381 -15.07255 -14.98955 -14.82685 -14.67897 -14.59230 -14.47287 -14.27788 -13.75755 -13.48752 -13.38633 -13.26432 -13.04358 -12.97696 -12.59536 -12.43567 -12.38297 -12.29603 -11.99199 -11.86745 -11.52433 -11.42707 -11.05563 -10.74353 -10.44791 -10.26851 -10.19247 -9.42467 -8.42833 -6.03695 0.99867 1.28707 1.34587 1.42960 1.68618 1.90959 2.01921 2.21436 2.28223 2.58792 2.73605 3.05793 3.13651 3.13866 3.27450 3.47775 3.52441 3.56926 3.80064 3.90444 4.09492 4.15736 4.19151 4.30152 4.38939 4.46390 4.49368 4.54325 4.59096 4.63342 4.70932 4.81208 4.82719 4.85542 5.10708 5.21064 5.50185 5.75862 5.82752 5.95805 6.19794 6.32798 6.56987 6.86005 7.03401 7.36481 7.92765 8.74601 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.013400 B = 0.002463 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.040140 B =11365.206132 C =12890.403428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.396 6.396 3 C 0.082 3.918 4 H 0.106 0.894 5 C 0.034 3.966 6 N -0.512 5.512 7 C 0.044 3.956 8 C 0.449 3.551 9 O -0.605 6.605 10 N -0.589 5.589 11 C -0.326 4.326 12 H 0.056 0.944 13 C -0.014 4.014 14 N -0.933 5.933 15 Si 0.964 3.036 16 H -0.259 1.259 17 H -0.274 1.274 18 H -0.231 1.231 19 C 0.033 3.967 20 C 0.155 3.845 21 H 0.090 0.910 22 N -0.698 5.698 23 C 0.540 3.460 24 O -0.560 6.560 25 C -0.182 4.182 26 H 0.190 0.810 27 C -0.125 4.125 28 C 0.203 3.797 29 F -0.156 7.156 30 F -0.172 7.172 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.036 0.964 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.120 0.880 38 H 0.389 0.611 39 H 0.279 0.721 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.420 0.580 43 H 0.125 0.875 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.912 1.659 32.789 32.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C 0.023 3.977 4 H 0.124 0.876 5 C -0.094 4.094 6 N -0.238 5.238 7 C -0.088 4.088 8 C 0.237 3.763 9 O -0.489 6.489 10 N -0.231 5.231 11 C -0.456 4.456 12 H 0.074 0.926 13 C -0.213 4.213 14 N -0.574 5.574 15 Si 0.784 3.216 16 H -0.183 1.183 17 H -0.199 1.199 18 H -0.154 1.154 19 C -0.096 4.096 20 C 0.049 3.951 21 H 0.108 0.892 22 N -0.351 5.351 23 C 0.327 3.673 24 O -0.438 6.438 25 C -0.203 4.203 26 H 0.207 0.793 27 C -0.162 4.162 28 C 0.165 3.835 29 F -0.137 7.137 30 F -0.153 7.153 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.138 0.862 38 H 0.225 0.775 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.258 0.742 43 H 0.143 0.857 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.434 -0.017 32.026 32.058 hybrid contribution -0.517 2.037 -0.836 2.262 sum 0.916 2.020 31.191 31.270 Atomic orbital electron populations 1.23018 0.79278 1.04032 1.00893 1.87966 1.21632 1.27064 1.94831 1.23219 0.94342 0.86063 0.94083 0.87613 1.23226 0.88489 1.01016 0.96708 1.64457 1.12774 1.39700 1.06860 1.22129 1.02443 0.94124 0.90060 1.20751 0.84833 0.83912 0.86839 1.90551 1.43592 1.31536 1.83192 1.42014 1.45863 1.23551 1.11669 1.18985 1.27805 1.09474 0.89292 0.92557 1.26102 0.99033 1.02091 0.94088 1.69799 1.44486 1.38597 1.04488 0.85382 0.78601 0.77118 0.80538 1.18346 1.19939 1.15410 1.23601 1.00674 0.98721 0.86587 1.21603 0.94293 0.98556 0.80669 0.89180 1.45676 1.27008 1.53229 1.09152 1.19753 0.81843 0.79646 0.86098 1.90764 1.32604 1.39196 1.81214 1.23824 1.02181 1.00379 0.93965 0.79259 1.24482 0.99357 0.90659 1.01713 1.19967 0.91297 0.83575 0.88625 1.93063 1.88460 1.63698 1.68440 1.93051 1.63429 1.92361 1.66442 0.88538 0.91296 0.94571 0.93731 0.91148 0.89560 0.86229 0.77503 0.91121 0.90946 0.89376 0.74197 0.85695 0.81336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.85 113.37 1.23 1.67 16 2 O -0.40 -10.31 10.30 -148.98 -1.53 -11.84 16 3 C 0.08 1.88 3.21 31.47 0.10 1.99 16 4 H 0.11 1.63 7.39 -2.38 -0.02 1.61 16 5 C 0.03 1.10 4.88 86.45 0.42 1.52 16 6 N -0.51 -16.36 5.26 -887.57 -4.67 -21.03 16 7 C 0.04 1.38 5.48 85.55 0.47 1.85 16 8 C 0.45 20.32 7.36 87.66 0.64 20.97 16 9 O -0.60 -33.18 13.37 -3.08 -0.04 -33.23 16 10 N -0.59 -27.77 5.09 -306.98 -1.56 -29.33 16 11 C -0.33 -19.07 10.16 84.04 0.85 -18.21 16 12 H 0.06 3.92 7.39 -2.91 -0.02 3.90 16 13 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 14 N -0.93 -56.20 13.96 21.66 0.30 -55.90 16 15 Si 0.96 38.73 27.74 68.60 1.90 40.63 16 16 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 17 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 18 H -0.23 -7.75 6.52 99.48 0.65 -7.10 16 19 C 0.03 0.79 6.24 86.65 0.54 1.33 16 20 C 0.15 3.47 3.09 46.20 0.14 3.61 16 21 H 0.09 2.60 7.64 -2.39 -0.02 2.58 16 22 N -0.70 -10.33 5.20 -436.84 -2.27 -12.60 16 23 C 0.54 9.43 7.25 87.66 0.64 10.06 16 24 O -0.56 -14.91 15.98 -3.05 -0.05 -14.96 16 25 C -0.18 -1.66 6.18 -11.52 -0.07 -1.73 16 26 H 0.19 0.17 8.14 -2.39 -0.02 0.15 16 27 C -0.12 -0.99 10.01 30.60 0.31 -0.68 16 28 C 0.20 2.61 5.20 30.62 0.16 2.77 16 29 F -0.16 -2.05 17.60 44.97 0.79 -1.26 16 30 F -0.17 -3.48 17.14 44.97 0.77 -2.71 16 31 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.07 0.85 8.11 -2.38 -0.02 0.83 16 33 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.04 1.43 7.59 -2.39 -0.02 1.41 16 35 H 0.07 2.96 6.56 -2.38 -0.02 2.94 16 36 H 0.09 2.17 7.89 -2.39 -0.02 2.15 16 37 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 38 H 0.39 15.19 5.76 -92.71 -0.53 14.66 16 39 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 40 H 0.07 1.40 7.85 -2.39 -0.02 1.38 16 41 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.42 3.08 8.33 -92.71 -0.77 2.30 16 43 H 0.12 1.40 7.67 -2.39 -0.02 1.38 16 44 H 0.17 0.11 8.14 -2.39 -0.02 0.09 16 Total: -1.00 -85.50 377.11 -0.76 -86.26 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: -0.30 Total: 31.15 kcal Atomic # 6 Polarization: 18.92 SS G_CDS: 5.90 Total: 24.82 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -8.21 Total: -118.87 kcal Atomic # 8 Polarization: -58.40 SS G_CDS: -1.62 Total: -60.03 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 1.56 Total: -3.97 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 1.90 Total: 40.63 kcal Total: -85.50 -0.76 -86.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212218686.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.188 kcal (2) G-P(sol) polarization free energy of solvation -85.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds