Wall clock time and date at job start Wed Apr 1 2020 05:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.34926 * 116.99908 * 2 1 4 4 O 1.21660 * 119.99916 * 0.02562 * 3 2 1 5 5 C 1.41777 * 120.00251 * 180.02562 * 3 2 1 6 6 C 1.35092 * 119.99935 * 180.02562 * 5 3 2 7 7 C 1.46961 * 119.99936 * 179.97438 * 6 5 3 8 8 C 1.39978 * 120.09278 * 0.02562 * 7 6 5 9 9 C 1.37739 * 119.97221 * 180.02562 * 8 7 6 10 10 C 1.38876 * 120.17566 * 359.97438 * 9 8 7 11 11 O 1.35814 * 119.90220 * 179.97438 * 10 9 8 12 12 C 1.42898 * 117.00161 * 0.02562 * 11 10 9 13 13 C 1.39452 * 120.19455 * 0.02562 * 10 9 8 14 14 O 1.35997 * 119.98663 * 180.02562 * 13 10 9 15 15 C 1.42902 * 116.99662 * 174.99775 * 14 13 10 16 16 H 1.08995 * 110.91822 * 321.56979 * 15 14 13 17 17 C 1.55451 * 111.11476 * 197.57716 * 15 14 13 18 18 C 1.54325 * 102.96613 * 206.46525 * 17 15 14 19 19 N 1.47012 * 107.27018 * 22.19543 * 18 17 15 20 20 C 1.36937 * 125.64395 * 181.03942 * 19 18 17 21 21 H 1.08007 * 119.99829 * 180.02562 * 20 19 18 22 22 C 1.38815 * 120.00252 * 0.02562 * 20 19 18 23 23 N 1.31613 * 119.99930 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00035 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47102 * 89.99985 * 24 22 20 26 26 H 1.48491 * 109.46901 * 210.00143 * 24 22 20 27 27 H 1.48503 * 109.47279 * 330.00112 * 24 22 20 28 28 C 1.47425 * 108.70749 * 1.05587 * 19 18 17 29 29 C 1.38083 * 120.02209 * 0.27095 * 13 10 9 30 30 H 1.08997 * 109.46794 * 299.99302 * 1 2 3 31 31 H 1.08996 * 109.47402 * 60.00185 * 1 2 3 32 32 H 1.09003 * 109.46461 * 179.97438 * 1 2 3 33 33 H 1.08000 * 119.99748 * 359.97438 * 5 3 2 34 34 H 1.08001 * 120.00733 * 0.02562 * 6 5 3 35 35 H 1.07996 * 120.01666 * 359.97438 * 8 7 6 36 36 H 1.07994 * 119.91238 * 180.02562 * 9 8 7 37 37 H 1.09001 * 109.47411 * 300.00229 * 12 11 10 38 38 H 1.09006 * 109.47249 * 60.00084 * 12 11 10 39 39 H 1.08997 * 109.47202 * 180.02562 * 12 11 10 40 40 H 1.08998 * 110.70428 * 88.09064 * 17 15 14 41 41 H 1.09000 * 110.85925 * 324.90853 * 17 15 14 42 42 H 1.09001 * 109.87887 * 262.77122 * 18 17 15 43 43 H 1.09007 * 110.00559 * 141.68643 * 18 17 15 44 44 H 0.97000 * 120.00069 * 180.02562 * 23 22 20 45 45 H 1.08997 * 110.36588 * 94.71474 * 28 19 18 46 46 H 1.08998 * 110.36864 * 216.92396 * 28 19 18 47 47 H 1.07995 * 120.08240 * 179.72578 * 29 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0416 1.2022 0.0000 4 8 1.3790 2.2225 0.0005 5 6 3.4574 1.2765 -0.0005 6 6 4.0706 2.4802 0.0000 7 6 5.5382 2.5572 0.0000 8 6 6.3026 1.3845 -0.0011 9 6 7.6779 1.4596 -0.0006 10 6 8.3095 2.6964 0.0005 11 8 9.6660 2.7640 0.0016 12 6 10.3773 1.5246 0.0009 13 6 7.5550 3.8692 0.0016 14 8 8.1779 5.0782 0.0021 15 6 7.3474 6.2359 -0.1078 16 1 6.5239 6.0597 -0.7998 17 6 8.1757 7.4809 -0.5324 18 6 7.3591 8.6545 0.0486 19 7 6.5363 8.1152 1.1410 20 6 5.6519 8.8316 1.9024 21 1 5.0924 8.3410 2.6853 22 6 5.4744 10.1883 1.6682 23 7 6.1558 10.7860 0.7139 24 14 4.2685 11.1656 2.7075 25 1 4.9707 11.7157 3.8947 26 1 3.7110 12.2810 1.9012 27 1 3.1651 10.2770 3.1527 28 6 6.8212 6.6756 1.2812 29 6 6.1758 3.8034 0.0072 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 4.0456 0.3707 -0.0005 34 1 3.4825 3.3860 0.0012 35 1 5.8142 0.4213 -0.0015 36 1 8.2667 0.5543 -0.0018 37 1 10.1118 0.9528 0.8901 38 1 10.1131 0.9545 -0.8898 39 1 11.4494 1.7210 0.0023 40 1 8.2347 7.5524 -1.6184 41 1 9.1734 7.4512 -0.0945 42 1 6.7178 9.0783 -0.7243 43 1 8.0309 9.4215 0.4342 44 1 6.0320 11.7341 0.5505 45 1 7.5821 6.5120 2.0443 46 1 5.9107 6.1312 1.5316 47 1 5.5906 4.7110 0.0126 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229713771.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:38 Heat of formation + Delta-G solvation = -78.185430 kcal Electronic energy + Delta-G solvation = -29871.779819 eV Core-core repulsion = 25601.416818 eV Total energy + Delta-G solvation = -4270.363000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.81238 -40.56157 -38.83996 -37.76070 -36.79714 -36.21281 -33.72970 -32.30549 -30.65242 -29.97155 -29.12227 -28.23004 -27.34348 -27.13484 -24.60106 -24.43982 -22.77140 -21.82116 -20.47868 -20.08914 -19.60462 -18.67360 -18.04680 -17.26064 -17.00471 -16.83551 -16.59253 -16.05644 -15.98862 -15.18526 -14.95423 -14.72963 -14.67859 -14.28310 -14.03217 -13.84382 -13.57478 -13.40847 -13.06060 -12.74605 -12.53483 -12.36135 -12.34690 -12.05591 -11.99126 -11.87381 -11.60917 -11.39138 -11.17780 -10.96497 -10.94585 -10.81117 -10.71934 -10.35247 -10.31822 -10.10352 -10.00958 -9.87681 -9.70960 -8.68654 -8.63429 -7.73906 -6.89742 -5.74987 -3.09627 0.16283 1.21706 1.67286 2.70572 2.87857 3.09021 3.31169 3.40299 3.45518 3.47312 3.65588 4.44009 4.47293 4.50711 4.72570 4.81969 4.89771 4.94425 4.96514 4.96894 5.01713 5.06271 5.10360 5.21304 5.28185 5.31614 5.32548 5.46834 5.51848 5.60150 5.67924 5.72679 5.85939 6.00010 6.04973 6.16771 6.23862 6.31845 6.38982 6.42618 6.49779 6.55602 6.63376 7.07839 7.50576 7.54198 7.62053 7.66676 7.78828 8.20189 9.17125 9.76759 10.40915 11.36797 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.006837 B = 0.003209 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4094.320356 B = 8723.444213 C =12427.793791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.500 3.500 4 O -0.514 6.514 5 C -0.229 4.229 6 C 0.033 3.967 7 C -0.091 4.091 8 C -0.091 4.091 9 C -0.183 4.183 10 C 0.117 3.883 11 O -0.300 6.300 12 C 0.025 3.975 13 C 0.111 3.889 14 O -0.292 6.292 15 C 0.062 3.938 16 H 0.080 0.920 17 C -0.132 4.132 18 C 0.178 3.822 19 N -0.602 5.602 20 C -0.231 4.231 21 H 0.079 0.921 22 C -0.006 4.006 23 N -0.922 5.922 24 Si 0.914 3.086 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.118 3.882 29 C -0.140 4.140 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.253 0.747 45 H 0.031 0.969 46 H 0.043 0.957 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.103 -24.949 -4.276 25.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.349 3.651 4 O -0.405 6.405 5 C -0.248 4.248 6 C 0.014 3.986 7 C -0.092 4.092 8 C -0.110 4.110 9 C -0.202 4.202 10 C 0.070 3.930 11 O -0.213 6.213 12 C -0.070 4.070 13 C 0.065 3.935 14 O -0.205 6.205 15 C 0.005 3.995 16 H 0.098 0.902 17 C -0.171 4.171 18 C 0.053 3.947 19 N -0.329 5.329 20 C -0.359 4.359 21 H 0.097 0.903 22 C -0.203 4.203 23 N -0.569 5.569 24 Si 0.744 3.256 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.206 1.206 28 C -0.009 4.009 29 C -0.158 4.158 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.119 0.881 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.048 0.952 46 H 0.061 0.939 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.137 -24.213 -4.254 24.610 hybrid contribution -1.024 0.326 0.541 1.203 sum 0.113 -23.887 -3.714 24.174 Atomic orbital electron populations 1.22867 0.77110 1.03458 1.02499 1.86199 1.23194 1.33213 1.84668 1.20025 0.90116 0.81391 0.73588 1.90925 1.67583 1.35680 1.46353 1.21114 0.91023 0.99888 1.12742 1.22592 0.92775 0.98152 0.85086 1.18578 0.91937 0.92892 1.05779 1.21065 0.92830 0.97804 0.99258 1.20939 0.95500 0.95699 1.08033 1.18568 0.82911 0.91623 0.99866 1.86194 1.14827 1.32037 1.88203 1.23098 0.97177 0.85546 1.01168 1.18158 0.89968 0.85044 1.00358 1.86227 1.35639 1.11293 1.87338 1.23955 0.93451 0.82870 0.99178 0.90231 1.23050 0.99796 0.93663 1.00570 1.21218 0.92310 0.90807 0.90344 1.44329 1.47600 1.02304 1.38715 1.19060 1.14911 0.90737 1.11158 0.90283 1.24812 1.00007 0.96592 0.98848 1.69938 1.43860 1.10183 1.32948 0.86091 0.80464 0.79746 0.79309 1.21526 1.21597 1.20588 1.21983 0.97784 0.87587 0.93571 1.21518 0.92688 0.98738 1.02901 0.92140 0.92180 0.88228 0.84219 0.84135 0.84944 0.84470 0.92630 0.92671 0.88139 0.91330 0.91038 0.93040 0.93158 0.93616 0.95157 0.93930 0.83358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.45 101.05 1.06 1.33 16 2 O -0.36 -3.76 10.46 -41.11 -0.43 -4.19 16 3 C 0.50 6.13 7.70 32.08 0.25 6.37 16 4 O -0.51 -7.88 15.88 -19.39 -0.31 -8.19 16 5 C -0.23 -2.37 9.33 -39.35 -0.37 -2.74 16 6 C 0.03 0.37 9.41 -37.17 -0.35 0.02 16 7 C -0.09 -1.08 5.87 -105.06 -0.62 -1.69 16 8 C -0.09 -0.90 9.40 -39.11 -0.37 -1.27 16 9 C -0.18 -1.83 9.01 -39.53 -0.36 -2.19 16 10 C 0.12 1.53 6.71 -38.89 -0.26 1.27 16 11 O -0.30 -3.87 10.26 -33.83 -0.35 -4.21 16 12 C 0.03 0.19 9.81 101.05 0.99 1.18 16 13 C 0.11 1.69 6.64 -39.19 -0.26 1.43 16 14 O -0.29 -5.11 9.74 -34.40 -0.34 -5.44 16 15 C 0.06 1.14 2.83 -24.43 -0.07 1.07 16 16 H 0.08 1.38 6.61 -51.93 -0.34 1.04 16 17 C -0.13 -2.53 6.70 -24.74 -0.17 -2.70 16 18 C 0.18 4.29 5.38 -3.07 -0.02 4.27 16 19 N -0.60 -15.40 3.39 -170.08 -0.58 -15.98 16 20 C -0.23 -6.44 10.28 -15.06 -0.15 -6.59 16 21 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 22 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 23 N -0.92 -26.92 10.31 55.49 0.57 -26.35 16 24 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 28 C 0.12 2.49 6.59 -2.53 -0.02 2.47 16 29 C -0.14 -1.94 8.46 -38.98 -0.33 -2.27 16 30 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 31 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.14 1.09 6.06 -52.49 -0.32 0.77 16 34 H 0.14 1.72 7.45 -52.49 -0.39 1.32 16 35 H 0.13 0.93 6.15 -52.49 -0.32 0.60 16 36 H 0.14 0.95 6.27 -52.49 -0.33 0.63 16 37 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 38 H 0.05 0.33 7.65 -51.93 -0.40 -0.07 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.05 1.35 7.38 -51.93 -0.38 0.96 16 43 H 0.05 1.34 7.50 -51.93 -0.39 0.95 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.04 0.86 7.25 -51.93 -0.38 0.48 16 47 H 0.15 2.13 5.29 -52.49 -0.28 1.86 16 LS Contribution 389.35 15.07 5.87 5.87 Total: -1.00 -33.68 389.35 -8.15 -41.82 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -6.43 Total: -0.17 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -1.13 Total: -0.30 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: -0.01 Total: -42.33 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -1.42 Total: -22.03 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.68 -8.15 -41.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229713771.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.364 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds