Wall clock time and date at job start Wed Apr 1 2020 05:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.34926 * 116.99908 * 2 1 4 4 O 1.21660 * 119.99916 * 0.02562 * 3 2 1 5 5 C 1.41777 * 120.00251 * 180.02562 * 3 2 1 6 6 C 1.35092 * 119.99935 * 180.02562 * 5 3 2 7 7 C 1.46961 * 119.99936 * 179.97438 * 6 5 3 8 8 C 1.39978 * 120.09278 * 0.02562 * 7 6 5 9 9 C 1.37739 * 119.97221 * 180.02562 * 8 7 6 10 10 C 1.38876 * 120.17566 * 359.97438 * 9 8 7 11 11 O 1.35814 * 119.90220 * 179.97438 * 10 9 8 12 12 C 1.42898 * 117.00161 * 0.02562 * 11 10 9 13 13 C 1.39452 * 120.19455 * 0.02562 * 10 9 8 14 14 O 1.35997 * 119.98663 * 180.02562 * 13 10 9 15 15 C 1.42902 * 116.99662 * 174.99775 * 14 13 10 16 16 H 1.08995 * 110.91822 * 321.56979 * 15 14 13 17 17 C 1.55451 * 111.11476 * 197.57716 * 15 14 13 18 18 C 1.54325 * 102.96613 * 206.46525 * 17 15 14 19 19 N 1.47012 * 107.27018 * 22.19543 * 18 17 15 20 20 C 1.36937 * 125.64395 * 181.03942 * 19 18 17 21 21 H 1.08007 * 119.99829 * 180.02562 * 20 19 18 22 22 C 1.38815 * 120.00252 * 0.02562 * 20 19 18 23 23 N 1.31613 * 119.99930 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00035 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47102 * 89.99985 * 24 22 20 26 26 H 1.48491 * 109.46901 * 210.00143 * 24 22 20 27 27 H 1.48503 * 109.47279 * 330.00112 * 24 22 20 28 28 C 1.47425 * 108.70749 * 1.05587 * 19 18 17 29 29 C 1.38083 * 120.02209 * 0.27095 * 13 10 9 30 30 H 1.08997 * 109.46794 * 299.99302 * 1 2 3 31 31 H 1.08996 * 109.47402 * 60.00185 * 1 2 3 32 32 H 1.09003 * 109.46461 * 179.97438 * 1 2 3 33 33 H 1.08000 * 119.99748 * 359.97438 * 5 3 2 34 34 H 1.08001 * 120.00733 * 0.02562 * 6 5 3 35 35 H 1.07996 * 120.01666 * 359.97438 * 8 7 6 36 36 H 1.07994 * 119.91238 * 180.02562 * 9 8 7 37 37 H 1.09001 * 109.47411 * 300.00229 * 12 11 10 38 38 H 1.09006 * 109.47249 * 60.00084 * 12 11 10 39 39 H 1.08997 * 109.47202 * 180.02562 * 12 11 10 40 40 H 1.08998 * 110.70428 * 88.09064 * 17 15 14 41 41 H 1.09000 * 110.85925 * 324.90853 * 17 15 14 42 42 H 1.09001 * 109.87887 * 262.77122 * 18 17 15 43 43 H 1.09007 * 110.00559 * 141.68643 * 18 17 15 44 44 H 0.97000 * 120.00069 * 180.02562 * 23 22 20 45 45 H 1.08997 * 110.36588 * 94.71474 * 28 19 18 46 46 H 1.08998 * 110.36864 * 216.92396 * 28 19 18 47 47 H 1.07995 * 120.08240 * 179.72578 * 29 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0416 1.2022 0.0000 4 8 1.3790 2.2225 0.0005 5 6 3.4574 1.2765 -0.0005 6 6 4.0706 2.4802 0.0000 7 6 5.5382 2.5572 0.0000 8 6 6.3026 1.3845 -0.0011 9 6 7.6779 1.4596 -0.0006 10 6 8.3095 2.6964 0.0005 11 8 9.6660 2.7640 0.0016 12 6 10.3773 1.5246 0.0009 13 6 7.5550 3.8692 0.0016 14 8 8.1779 5.0782 0.0021 15 6 7.3474 6.2359 -0.1078 16 1 6.5239 6.0597 -0.7998 17 6 8.1757 7.4809 -0.5324 18 6 7.3591 8.6545 0.0486 19 7 6.5363 8.1152 1.1410 20 6 5.6519 8.8316 1.9024 21 1 5.0924 8.3410 2.6853 22 6 5.4744 10.1883 1.6682 23 7 6.1558 10.7860 0.7139 24 14 4.2685 11.1656 2.7075 25 1 4.9707 11.7157 3.8947 26 1 3.7110 12.2810 1.9012 27 1 3.1651 10.2770 3.1527 28 6 6.8212 6.6756 1.2812 29 6 6.1758 3.8034 0.0072 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 4.0456 0.3707 -0.0005 34 1 3.4825 3.3860 0.0012 35 1 5.8142 0.4213 -0.0015 36 1 8.2667 0.5543 -0.0018 37 1 10.1118 0.9528 0.8901 38 1 10.1131 0.9545 -0.8898 39 1 11.4494 1.7210 0.0023 40 1 8.2347 7.5524 -1.6184 41 1 9.1734 7.4512 -0.0945 42 1 6.7178 9.0783 -0.7243 43 1 8.0309 9.4215 0.4342 44 1 6.0320 11.7341 0.5505 45 1 7.5821 6.5120 2.0443 46 1 5.9107 6.1312 1.5316 47 1 5.5906 4.7110 0.0126 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229713771.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:37 Heat of formation + Delta-G solvation = -97.848286 kcal Electronic energy + Delta-G solvation = -29872.632464 eV Core-core repulsion = 25601.416818 eV Total energy + Delta-G solvation = -4271.215646 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.77816 -41.51959 -40.05387 -38.73421 -37.96186 -37.56344 -34.72869 -34.21599 -31.68067 -31.25644 -30.57984 -29.24400 -28.71269 -27.83882 -26.54276 -25.28300 -23.90240 -22.78288 -22.15215 -21.63675 -20.63402 -19.61106 -19.03853 -18.91344 -18.17966 -17.89053 -17.45425 -17.03516 -16.89245 -16.74809 -16.38704 -15.88833 -15.77514 -15.52084 -15.27642 -15.03856 -14.72475 -14.43778 -14.20670 -14.02438 -13.94006 -13.77399 -13.36673 -13.21380 -13.08962 -12.94503 -12.83828 -12.71357 -12.52927 -12.31278 -12.21320 -12.06414 -11.99934 -11.87402 -11.75552 -11.69483 -11.62495 -11.51971 -10.84890 -10.75303 -9.67313 -8.99407 -8.68765 -7.89815 -5.27167 -0.73306 0.30882 0.74003 1.44831 1.46794 1.55591 1.90451 1.97641 2.07579 2.33277 2.47913 2.74857 3.29119 3.52617 3.60476 3.66091 3.71076 3.88796 3.90828 4.01343 4.07595 4.14448 4.20285 4.25252 4.33233 4.33424 4.44690 4.48285 4.52449 4.57146 4.70224 4.72132 4.75117 4.80947 4.84659 4.92118 4.98189 5.01115 5.19088 5.21455 5.38017 5.39169 5.51385 5.56205 5.61473 5.67733 6.08619 6.16355 6.58780 6.71912 7.04006 7.68503 8.32440 9.20665 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.006837 B = 0.003209 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4094.320356 B = 8723.444213 C =12427.793791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.497 3.503 4 O -0.555 6.555 5 C -0.213 4.213 6 C 0.023 3.977 7 C -0.095 4.095 8 C -0.074 4.074 9 C -0.171 4.171 10 C 0.110 3.890 11 O -0.330 6.330 12 C 0.014 3.986 13 C 0.072 3.928 14 O -0.305 6.305 15 C 0.084 3.916 16 H 0.087 0.913 17 C -0.120 4.120 18 C 0.186 3.814 19 N -0.622 5.622 20 C -0.248 4.248 21 H 0.082 0.918 22 C -0.061 4.061 23 N -0.949 5.949 24 Si 0.981 3.019 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.270 1.270 28 C 0.118 3.882 29 C -0.151 4.151 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.135 0.865 33 H 0.176 0.824 34 H 0.121 0.879 35 H 0.172 0.828 36 H 0.177 0.823 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.024 0.976 43 H 0.017 0.983 44 H 0.250 0.750 45 H 0.023 0.977 46 H 0.048 0.952 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.120 -29.039 -4.275 29.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.347 3.653 4 O -0.449 6.449 5 C -0.232 4.232 6 C 0.004 3.996 7 C -0.096 4.096 8 C -0.092 4.092 9 C -0.189 4.189 10 C 0.064 3.936 11 O -0.244 6.244 12 C -0.080 4.080 13 C 0.026 3.974 14 O -0.218 6.218 15 C 0.027 3.973 16 H 0.105 0.895 17 C -0.158 4.158 18 C 0.062 3.938 19 N -0.350 5.350 20 C -0.376 4.376 21 H 0.100 0.900 22 C -0.255 4.255 23 N -0.598 5.598 24 Si 0.808 3.192 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.194 1.194 28 C -0.008 4.008 29 C -0.169 4.169 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.153 0.847 33 H 0.193 0.807 34 H 0.139 0.861 35 H 0.190 0.810 36 H 0.194 0.806 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.131 0.869 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.042 0.958 43 H 0.035 0.965 44 H 0.059 0.941 45 H 0.040 0.960 46 H 0.066 0.934 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.165 -28.371 -4.249 28.711 hybrid contribution -1.046 1.380 0.558 1.819 sum 0.119 -26.991 -3.690 27.242 Atomic orbital electron populations 1.23156 0.75751 1.05694 1.02111 1.86195 1.24560 1.32039 1.84051 1.20425 0.90864 0.81315 0.72647 1.90916 1.68576 1.37080 1.48285 1.21301 0.90242 1.00589 1.11025 1.22444 0.92666 0.98141 0.86332 1.18630 0.92028 0.92910 1.06023 1.21512 0.92775 0.98443 0.96479 1.21366 0.95825 0.95745 1.05963 1.18798 0.83366 0.91832 0.99619 1.86154 1.14856 1.35191 1.88169 1.23448 0.97424 0.84194 1.02893 1.18490 0.90770 0.84689 1.03408 1.86168 1.35528 1.11815 1.88332 1.23508 0.93359 0.83432 0.97032 0.89541 1.22868 0.99079 0.92050 1.01836 1.20952 0.91500 0.92099 0.89295 1.44604 1.47436 1.04215 1.38762 1.19435 1.15270 0.91422 1.11519 0.90022 1.25666 1.01957 0.97586 1.00251 1.70148 1.45212 1.10035 1.34369 0.85053 0.78464 0.78076 0.77576 1.21145 1.21727 1.19448 1.22053 0.97870 0.85467 0.95429 1.21439 0.92374 0.99275 1.03861 0.92653 0.92543 0.84663 0.80720 0.86109 0.81049 0.80595 0.90934 0.90686 0.86944 0.88781 0.90494 0.95807 0.96505 0.94101 0.95961 0.93373 0.85114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.45 113.37 1.18 1.56 16 2 O -0.35 -6.63 10.46 -58.41 -0.61 -7.24 16 3 C 0.50 11.49 7.70 68.70 0.53 12.01 16 4 O -0.55 -17.06 15.88 19.31 0.31 -16.76 16 5 C -0.21 -3.87 9.33 22.42 0.21 -3.66 16 6 C 0.02 0.50 9.41 23.83 0.22 0.72 16 7 C -0.10 -2.08 5.87 -20.15 -0.12 -2.20 16 8 C -0.07 -1.15 9.40 22.57 0.21 -0.94 16 9 C -0.17 -2.72 9.01 22.30 0.20 -2.52 16 10 C 0.11 2.68 6.71 22.72 0.15 2.83 16 11 O -0.33 -7.92 10.26 -77.43 -0.79 -8.72 16 12 C 0.01 0.17 9.81 113.37 1.11 1.28 16 13 C 0.07 2.15 6.64 22.53 0.15 2.30 16 14 O -0.30 -10.79 9.74 -79.48 -0.77 -11.56 16 15 C 0.08 3.15 2.83 32.09 0.09 3.24 16 16 H 0.09 3.10 6.61 -2.39 -0.02 3.09 16 17 C -0.12 -4.70 6.70 31.89 0.21 -4.49 16 18 C 0.19 9.45 5.38 86.73 0.47 9.92 16 19 N -0.62 -33.22 3.39 -692.01 -2.35 -35.57 16 20 C -0.25 -14.29 10.28 84.03 0.86 -13.43 16 21 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 22 C -0.06 -3.55 5.49 84.86 0.47 -3.08 16 23 N -0.95 -57.63 10.31 21.65 0.22 -57.41 16 24 Si 0.98 46.59 29.55 68.60 2.03 48.62 16 25 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 28 C 0.12 5.17 6.59 86.85 0.57 5.74 16 29 C -0.15 -4.20 8.46 22.66 0.19 -4.00 16 30 H 0.05 0.84 8.13 -2.39 -0.02 0.82 16 31 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 32 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.18 1.83 6.06 -2.91 -0.02 1.81 16 34 H 0.12 3.09 7.45 -2.91 -0.02 3.07 16 35 H 0.17 1.29 6.15 -2.91 -0.02 1.28 16 36 H 0.18 1.40 6.27 -2.91 -0.02 1.38 16 37 H 0.07 0.60 7.65 -2.39 -0.02 0.59 16 38 H 0.07 0.58 7.65 -2.38 -0.02 0.57 16 39 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.08 2.91 8.14 -2.39 -0.02 2.90 16 42 H 0.02 1.32 7.38 -2.39 -0.02 1.30 16 43 H 0.02 0.95 7.50 -2.38 -0.02 0.93 16 44 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 45 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.05 2.03 7.25 -2.39 -0.02 2.01 16 47 H 0.13 3.98 5.29 -2.91 -0.02 3.97 16 Total: -1.00 -77.26 389.35 5.74 -71.51 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 1.00 Total: 11.83 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 6.72 Total: 5.30 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -2.13 Total: -92.98 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -1.87 Total: -44.28 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -77.26 5.74 -71.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229713771.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.335 kcal (2) G-P(sol) polarization free energy of solvation -77.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds