Wall clock time and date at job start Wed Apr 1 2020 05:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 117.00242 * 2 1 4 4 O 1.20820 * 119.99763 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99617 * 180.02562 * 3 2 1 6 6 C 1.52994 * 110.45998 * 300.70059 * 5 3 2 7 7 N 1.46499 * 109.47466 * 57.39461 * 6 5 3 8 8 C 1.34774 * 120.00298 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99740 * 359.97438 * 8 7 6 10 10 C 1.50696 * 119.99827 * 180.02562 * 8 7 6 11 11 H 1.08998 * 109.47398 * 311.37365 * 10 8 7 12 12 C 1.50698 * 109.47494 * 71.37693 * 10 8 7 13 13 H 1.08003 * 119.99720 * 54.59977 * 12 10 8 14 14 C 1.37867 * 120.00445 * 234.59984 * 12 10 8 15 15 N 1.31515 * 120.00480 * 171.82598 * 14 12 10 16 16 Si 1.86811 * 119.99843 * 351.82624 * 14 12 10 17 17 H 1.48499 * 109.46793 * 84.53943 * 16 14 12 18 18 H 1.48494 * 109.47191 * 204.54181 * 16 14 12 19 19 H 1.48499 * 109.46833 * 324.54313 * 16 14 12 20 20 C 1.50707 * 109.46776 * 191.37765 * 10 8 7 21 21 C 1.38237 * 119.99727 * 291.76871 * 20 10 8 22 22 C 1.38242 * 119.99559 * 179.74668 * 21 20 10 23 23 C 1.38231 * 119.99812 * 0.53156 * 22 21 20 24 24 C 1.38235 * 119.99986 * 359.74120 * 23 22 21 25 25 C 1.38231 * 119.99800 * 112.04696 * 20 10 8 26 26 C 1.54514 * 110.50932 * 178.09230 * 5 3 2 27 27 C 1.54472 * 104.06486 * 241.22182 * 26 5 3 28 28 O 1.44426 * 104.80703 * 23.97611 * 27 26 5 29 29 C 1.44424 * 105.27421 * 319.49080 * 28 27 26 30 30 H 1.09003 * 109.46485 * 300.00195 * 1 2 3 31 31 H 1.08996 * 109.46907 * 59.99899 * 1 2 3 32 32 H 1.08994 * 109.47553 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46966 * 297.39388 * 6 5 3 34 34 H 1.09000 * 109.47205 * 177.40314 * 6 5 3 35 35 H 0.97002 * 119.99274 * 0.02562 * 7 6 5 36 36 H 0.97003 * 120.00185 * 180.02562 * 15 14 12 37 37 H 1.08003 * 120.00220 * 359.97438 * 21 20 10 38 38 H 1.07994 * 119.99939 * 180.29520 * 22 21 20 39 39 H 1.08004 * 119.99583 * 179.77472 * 23 22 21 40 40 H 1.08007 * 119.99795 * 180.02562 * 24 23 22 41 41 H 1.07998 * 120.00151 * 359.97438 * 25 20 10 42 42 H 1.09003 * 110.51028 * 359.86669 * 26 5 3 43 43 H 1.09004 * 110.50865 * 122.43141 * 26 5 3 44 44 H 1.08997 * 110.37503 * 142.81102 * 27 26 5 45 45 H 1.09007 * 110.37190 * 265.03932 * 27 26 5 46 46 H 1.09002 * 110.37444 * 281.68021 * 29 28 27 47 47 H 1.08997 * 110.37406 * 159.33963 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.1392 0.5715 1.2316 7 7 3.6847 -0.8210 1.2546 8 6 4.0667 -1.6382 2.2560 9 8 4.7871 -1.2207 3.1379 10 6 3.5997 -3.0707 2.2793 11 1 2.5226 -3.1045 2.1155 12 6 4.2978 -3.8445 1.1908 13 1 5.3765 -3.8491 1.1383 14 6 3.5595 -4.5466 0.2619 15 7 4.1549 -5.0878 -0.7784 16 14 1.7133 -4.7293 0.4810 17 1 1.0285 -3.5342 -0.0740 18 1 1.2477 -5.9439 -0.2351 19 1 1.3965 -4.8547 1.9264 20 6 3.9236 -3.6829 3.6178 21 6 5.2400 -3.9083 3.9743 22 6 5.5373 -4.4650 5.2042 23 6 4.5178 -4.8065 6.0729 24 6 3.2011 -4.5863 5.7140 25 6 2.9040 -4.0244 4.4865 26 6 4.0314 2.7474 -0.0486 27 6 4.8341 2.8448 -1.3649 28 8 4.3222 1.7752 -2.1894 29 6 4.1432 0.6566 -1.2936 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 3.7964 1.0805 2.1325 34 1 5.2281 0.5978 1.1915 35 1 3.1088 -1.1549 0.5490 36 1 3.6354 -5.5814 -1.4321 37 1 6.0364 -3.6460 3.2935 38 1 6.5660 -4.6367 5.4847 39 1 4.7500 -5.2448 7.0323 40 1 2.4045 -4.8527 6.3930 41 1 1.8754 -3.8520 4.2062 42 1 3.1728 3.4184 -0.0744 43 1 4.6674 2.9752 0.8069 44 1 4.6621 3.8087 -1.8438 45 1 5.8975 2.7020 -1.1723 46 1 5.1004 0.1763 -1.0903 47 1 3.4404 -0.0605 -1.7177 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361725844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:03 Heat of formation + Delta-G solvation = -140.885650 kcal Electronic energy + Delta-G solvation = -31978.288601 eV Core-core repulsion = 27705.206715 eV Total energy + Delta-G solvation = -4273.081886 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.26226 -39.35433 -39.04210 -37.87608 -36.57824 -34.96636 -33.65587 -32.10978 -31.54023 -30.14973 -29.78436 -28.01678 -27.67372 -25.68094 -23.86106 -23.31610 -22.71242 -21.86492 -20.97694 -20.05850 -19.26853 -17.65233 -17.24036 -17.15083 -16.91570 -16.21269 -16.08592 -15.80883 -15.61399 -15.12215 -14.80312 -14.71218 -14.39902 -14.16095 -13.88555 -13.56612 -13.35051 -13.00302 -12.86911 -12.76024 -12.66731 -12.45504 -12.27605 -12.03284 -12.01636 -11.79301 -11.66935 -11.23444 -11.20414 -11.12842 -11.06765 -10.86685 -10.61454 -10.50749 -10.18304 -10.04530 -9.87517 -9.54352 -9.08896 -8.71980 -8.51074 -8.15192 -7.83792 -6.34607 -4.36844 2.03618 2.13414 2.19819 2.50953 3.07430 3.20305 3.21958 3.55742 3.65296 3.77881 4.17265 4.19295 4.45963 4.59577 4.66319 4.67099 4.89511 4.99885 5.03724 5.05848 5.13158 5.42915 5.46457 5.50835 5.53167 5.53752 5.57377 5.64074 5.66512 5.70613 5.75186 5.84869 5.94703 6.11750 6.19419 6.27750 6.34197 6.39018 6.55298 6.71970 6.83926 7.01283 7.15466 7.23299 7.25591 7.57414 7.58340 7.77796 8.15056 8.27882 8.68233 9.07652 9.23516 10.76425 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011150 B = 0.004060 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.552705 B = 6895.300625 C = 7559.612104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.349 6.349 3 C 0.482 3.518 4 O -0.503 6.503 5 C -0.100 4.100 6 C 0.140 3.860 7 N -0.731 5.731 8 C 0.533 3.467 9 O -0.562 6.562 10 C 0.032 3.968 11 H 0.062 0.938 12 C -0.508 4.508 13 H 0.084 0.916 14 C 0.084 3.916 15 N -0.878 5.878 16 Si 0.861 3.139 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.261 1.261 20 C -0.027 4.027 21 C -0.071 4.071 22 C -0.130 4.130 23 C -0.142 4.142 24 C -0.130 4.130 25 C -0.133 4.133 26 C -0.143 4.143 27 C 0.046 3.954 28 O -0.370 6.370 29 C 0.058 3.942 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.408 0.592 36 H 0.269 0.731 37 H 0.119 0.881 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.656 10.569 1.869 11.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.265 6.265 3 C 0.324 3.676 4 O -0.390 6.390 5 C -0.102 4.102 6 C 0.015 3.985 7 N -0.386 5.386 8 C 0.323 3.677 9 O -0.440 6.440 10 C 0.011 3.989 11 H 0.080 0.920 12 C -0.545 4.545 13 H 0.102 0.898 14 C -0.121 4.121 15 N -0.513 5.513 16 Si 0.688 3.312 17 H -0.193 1.193 18 H -0.210 1.210 19 H -0.185 1.185 20 C -0.028 4.028 21 C -0.090 4.090 22 C -0.148 4.148 23 C -0.161 4.161 24 C -0.148 4.148 25 C -0.152 4.152 26 C -0.181 4.181 27 C -0.031 4.031 28 O -0.288 6.288 29 C -0.019 4.019 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.246 0.754 36 H 0.079 0.921 37 H 0.137 0.863 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.085 0.915 46 H 0.107 0.893 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.449 11.037 2.067 11.746 hybrid contribution -1.484 -0.416 -0.122 1.546 sum -4.934 10.621 1.945 11.871 Atomic orbital electron populations 1.23339 0.75798 1.04196 1.02445 1.86462 1.23854 1.32669 1.83536 1.23152 0.91122 0.81587 0.71732 1.90612 1.66675 1.36308 1.45431 1.22275 0.88654 0.99322 0.99933 1.21196 0.99830 0.83295 0.94183 1.46054 1.53813 1.09619 1.29155 1.21473 0.79034 0.87963 0.79263 1.90585 1.38102 1.77233 1.38080 1.18343 0.98269 0.89101 0.93230 0.92003 1.20526 0.95320 1.30270 1.08427 0.89800 1.25024 0.98209 0.94609 0.94218 1.69865 1.36620 1.34190 1.10659 0.87060 0.86181 0.78625 0.79368 1.19324 1.20989 1.18509 1.19959 0.93103 0.95676 0.94088 1.20884 0.96612 0.96224 0.95230 1.21041 0.98412 1.00509 0.94881 1.20871 0.93134 1.02720 0.99341 1.20882 0.96147 1.01151 0.96663 1.20989 0.98530 1.01363 0.94273 1.23101 1.02283 0.92979 0.99728 1.23461 0.97562 0.92075 0.90024 1.89170 1.85611 1.22211 1.31807 1.23599 1.02131 0.89684 0.86438 0.91758 0.91717 0.87751 0.91144 0.89785 0.75378 0.92054 0.86322 0.87117 0.87352 0.87295 0.87328 0.87960 0.88758 0.88609 0.91512 0.89253 0.87639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.48 16 2 O -0.35 -5.09 7.91 -39.25 -0.31 -5.40 16 3 C 0.48 7.02 6.53 36.01 0.24 7.25 16 4 O -0.50 -7.95 15.03 -18.75 -0.28 -8.24 16 5 C -0.10 -1.30 0.72 -154.09 -0.11 -1.41 16 6 C 0.14 2.02 4.31 -4.05 -0.02 2.01 16 7 N -0.73 -12.97 4.93 -60.30 -0.30 -13.27 16 8 C 0.53 11.24 6.99 -10.99 -0.08 11.17 16 9 O -0.56 -12.85 15.34 5.56 0.09 -12.76 16 10 C 0.03 0.71 2.20 -94.08 -0.21 0.51 16 11 H 0.06 1.33 4.73 -51.93 -0.25 1.08 16 12 C -0.51 -12.74 8.22 -34.45 -0.28 -13.02 16 13 H 0.08 2.34 7.67 -52.48 -0.40 1.93 16 14 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 15 N -0.88 -24.00 13.96 55.43 0.77 -23.22 16 16 Si 0.86 18.82 26.86 -169.99 -4.57 14.26 16 17 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 19 H -0.26 -5.57 6.95 56.52 0.39 -5.18 16 20 C -0.03 -0.60 4.39 -104.62 -0.46 -1.06 16 21 C -0.07 -1.51 8.19 -39.58 -0.32 -1.84 16 22 C -0.13 -2.39 10.05 -39.58 -0.40 -2.78 16 23 C -0.14 -2.41 10.05 -39.58 -0.40 -2.81 16 24 C -0.13 -2.27 10.05 -39.58 -0.40 -2.67 16 25 C -0.13 -2.63 9.67 -39.59 -0.38 -3.01 16 26 C -0.14 -1.51 6.32 -25.16 -0.16 -1.67 16 27 C 0.05 0.46 7.63 37.93 0.29 0.75 16 28 O -0.37 -4.98 11.65 -35.23 -0.41 -5.39 16 29 C 0.06 0.78 6.35 37.94 0.24 1.02 16 30 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 32 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 1.18 8.08 -51.93 -0.42 0.76 16 35 H 0.41 7.23 6.13 -40.82 -0.25 6.98 16 36 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.12 2.62 7.53 -52.48 -0.40 2.22 16 38 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 40 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 41 H 0.11 1.98 7.96 -52.49 -0.42 1.56 16 42 H 0.10 1.16 6.51 -51.93 -0.34 0.83 16 43 H 0.09 0.81 7.73 -51.93 -0.40 0.41 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.09 1.18 7.83 -51.93 -0.41 0.77 16 47 H 0.11 1.46 7.73 -51.93 -0.40 1.06 16 LS Contribution 387.73 15.07 5.84 5.84 Total: -1.00 -30.98 387.73 -7.27 -38.25 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -6.63 Total: 13.95 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -1.48 Total: -4.02 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.48 Total: -36.49 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.92 Total: -31.79 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.57 Total: 14.26 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.98 -7.27 -38.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361725844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.637 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds