Wall clock time and date at job start Wed Apr 1 2020 05:44:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45199 * 1
3 3 C 1.34228 * 117.00242 * 2 1
4 4 O 1.20820 * 119.99763 * 359.97438 * 3 2 1
5 5 C 1.50701 * 119.99617 * 180.02562 * 3 2 1
6 6 C 1.52994 * 110.45998 * 300.70059 * 5 3 2
7 7 N 1.46499 * 109.47466 * 57.39461 * 6 5 3
8 8 C 1.34774 * 120.00298 * 180.02562 * 7 6 5
9 9 O 1.21281 * 119.99740 * 359.97438 * 8 7 6
10 10 C 1.50696 * 119.99827 * 180.02562 * 8 7 6
11 11 H 1.08998 * 109.47398 * 311.37365 * 10 8 7
12 12 C 1.50698 * 109.47494 * 71.37693 * 10 8 7
13 13 H 1.08003 * 119.99720 * 54.59977 * 12 10 8
14 14 C 1.37867 * 120.00445 * 234.59984 * 12 10 8
15 15 N 1.31515 * 120.00480 * 171.82598 * 14 12 10
16 16 Si 1.86811 * 119.99843 * 351.82624 * 14 12 10
17 17 H 1.48499 * 109.46793 * 84.53943 * 16 14 12
18 18 H 1.48494 * 109.47191 * 204.54181 * 16 14 12
19 19 H 1.48499 * 109.46833 * 324.54313 * 16 14 12
20 20 C 1.50707 * 109.46776 * 191.37765 * 10 8 7
21 21 C 1.38237 * 119.99727 * 291.76871 * 20 10 8
22 22 C 1.38242 * 119.99559 * 179.74668 * 21 20 10
23 23 C 1.38231 * 119.99812 * 0.53156 * 22 21 20
24 24 C 1.38235 * 119.99986 * 359.74120 * 23 22 21
25 25 C 1.38231 * 119.99800 * 112.04696 * 20 10 8
26 26 C 1.54514 * 110.50932 * 178.09230 * 5 3 2
27 27 C 1.54472 * 104.06486 * 241.22182 * 26 5 3
28 28 O 1.44426 * 104.80703 * 23.97611 * 27 26 5
29 29 C 1.44424 * 105.27421 * 319.49080 * 28 27 26
30 30 H 1.09003 * 109.46485 * 300.00195 * 1 2 3
31 31 H 1.08996 * 109.46907 * 59.99899 * 1 2 3
32 32 H 1.08994 * 109.47553 * 180.02562 * 1 2 3
33 33 H 1.09004 * 109.46966 * 297.39388 * 6 5 3
34 34 H 1.09000 * 109.47205 * 177.40314 * 6 5 3
35 35 H 0.97002 * 119.99274 * 0.02562 * 7 6 5
36 36 H 0.97003 * 120.00185 * 180.02562 * 15 14 12
37 37 H 1.08003 * 120.00220 * 359.97438 * 21 20 10
38 38 H 1.07994 * 119.99939 * 180.29520 * 22 21 20
39 39 H 1.08004 * 119.99583 * 179.77472 * 23 22 21
40 40 H 1.08007 * 119.99795 * 180.02562 * 24 23 22
41 41 H 1.07998 * 120.00151 * 359.97438 * 25 20 10
42 42 H 1.09003 * 110.51028 * 359.86669 * 26 5 3
43 43 H 1.09004 * 110.50865 * 122.43141 * 26 5 3
44 44 H 1.08997 * 110.37503 * 142.81102 * 27 26 5
45 45 H 1.09007 * 110.37190 * 265.03932 * 27 26 5
46 46 H 1.09002 * 110.37444 * 281.68021 * 29 28 27
47 47 H 1.08997 * 110.37406 * 159.33963 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4034 2.2092 -0.0005
5 6 3.5664 1.2747 -0.0006
6 6 4.1392 0.5715 1.2316
7 7 3.6847 -0.8210 1.2546
8 6 4.0667 -1.6382 2.2560
9 8 4.7871 -1.2207 3.1379
10 6 3.5997 -3.0707 2.2793
11 1 2.5226 -3.1045 2.1155
12 6 4.2978 -3.8445 1.1908
13 1 5.3765 -3.8491 1.1383
14 6 3.5595 -4.5466 0.2619
15 7 4.1549 -5.0878 -0.7784
16 14 1.7133 -4.7293 0.4810
17 1 1.0285 -3.5342 -0.0740
18 1 1.2477 -5.9439 -0.2351
19 1 1.3965 -4.8547 1.9264
20 6 3.9236 -3.6829 3.6178
21 6 5.2400 -3.9083 3.9743
22 6 5.5373 -4.4650 5.2042
23 6 4.5178 -4.8065 6.0729
24 6 3.2011 -4.5863 5.7140
25 6 2.9040 -4.0244 4.4865
26 6 4.0314 2.7474 -0.0486
27 6 4.8341 2.8448 -1.3649
28 8 4.3222 1.7752 -2.1894
29 6 4.1432 0.6566 -1.2936
30 1 -0.3632 0.5139 0.8900
31 1 -0.3633 0.5138 -0.8899
32 1 -0.3634 -1.0276 0.0005
33 1 3.7964 1.0805 2.1325
34 1 5.2281 0.5978 1.1915
35 1 3.1088 -1.1549 0.5490
36 1 3.6354 -5.5814 -1.4321
37 1 6.0364 -3.6460 3.2935
38 1 6.5660 -4.6367 5.4847
39 1 4.7500 -5.2448 7.0323
40 1 2.4045 -4.8527 6.3930
41 1 1.8754 -3.8520 4.2062
42 1 3.1728 3.4184 -0.0744
43 1 4.6674 2.9752 0.8069
44 1 4.6621 3.8087 -1.8438
45 1 5.8975 2.7020 -1.1723
46 1 5.1004 0.1763 -1.0903
47 1 3.4404 -0.0605 -1.7177
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001361725844.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:44:03
Heat of formation + Delta-G solvation = -140.885650 kcal
Electronic energy + Delta-G solvation = -31978.288601 eV
Core-core repulsion = 27705.206715 eV
Total energy + Delta-G solvation = -4273.081886 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.26226 -39.35433 -39.04210 -37.87608 -36.57824 -34.96636 -33.65587 -32.10978
-31.54023 -30.14973 -29.78436 -28.01678 -27.67372 -25.68094 -23.86106 -23.31610
-22.71242 -21.86492 -20.97694 -20.05850 -19.26853 -17.65233 -17.24036 -17.15083
-16.91570 -16.21269 -16.08592 -15.80883 -15.61399 -15.12215 -14.80312 -14.71218
-14.39902 -14.16095 -13.88555 -13.56612 -13.35051 -13.00302 -12.86911 -12.76024
-12.66731 -12.45504 -12.27605 -12.03284 -12.01636 -11.79301 -11.66935 -11.23444
-11.20414 -11.12842 -11.06765 -10.86685 -10.61454 -10.50749 -10.18304 -10.04530
-9.87517 -9.54352 -9.08896 -8.71980 -8.51074 -8.15192 -7.83792 -6.34607
-4.36844 2.03618 2.13414 2.19819 2.50953 3.07430 3.20305 3.21958
3.55742 3.65296 3.77881 4.17265 4.19295 4.45963 4.59577 4.66319
4.67099 4.89511 4.99885 5.03724 5.05848 5.13158 5.42915 5.46457
5.50835 5.53167 5.53752 5.57377 5.64074 5.66512 5.70613 5.75186
5.84869 5.94703 6.11750 6.19419 6.27750 6.34197 6.39018 6.55298
6.71970 6.83926 7.01283 7.15466 7.23299 7.25591 7.57414 7.58340
7.77796 8.15056 8.27882 8.68233 9.07652 9.23516 10.76425
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.011150 B = 0.004060 C = 0.003703
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2510.552705 B = 6895.300625 C = 7559.612104
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 O -0.349 6.349
3 C 0.482 3.518
4 O -0.503 6.503
5 C -0.100 4.100
6 C 0.140 3.860
7 N -0.731 5.731
8 C 0.533 3.467
9 O -0.562 6.562
10 C 0.032 3.968
11 H 0.062 0.938
12 C -0.508 4.508
13 H 0.084 0.916
14 C 0.084 3.916
15 N -0.878 5.878
16 Si 0.861 3.139
17 H -0.268 1.268
18 H -0.284 1.284
19 H -0.261 1.261
20 C -0.027 4.027
21 C -0.071 4.071
22 C -0.130 4.130
23 C -0.142 4.142
24 C -0.130 4.130
25 C -0.133 4.133
26 C -0.143 4.143
27 C 0.046 3.954
28 O -0.370 6.370
29 C 0.058 3.942
30 H 0.064 0.936
31 H 0.064 0.936
32 H 0.104 0.896
33 H 0.070 0.930
34 H 0.084 0.916
35 H 0.408 0.592
36 H 0.269 0.731
37 H 0.119 0.881
38 H 0.111 0.889
39 H 0.108 0.892
40 H 0.109 0.891
41 H 0.109 0.891
42 H 0.102 0.898
43 H 0.094 0.906
44 H 0.096 0.904
45 H 0.067 0.933
46 H 0.089 0.911
47 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.656 10.569 1.869 11.338
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 O -0.265 6.265
3 C 0.324 3.676
4 O -0.390 6.390
5 C -0.102 4.102
6 C 0.015 3.985
7 N -0.386 5.386
8 C 0.323 3.677
9 O -0.440 6.440
10 C 0.011 3.989
11 H 0.080 0.920
12 C -0.545 4.545
13 H 0.102 0.898
14 C -0.121 4.121
15 N -0.513 5.513
16 Si 0.688 3.312
17 H -0.193 1.193
18 H -0.210 1.210
19 H -0.185 1.185
20 C -0.028 4.028
21 C -0.090 4.090
22 C -0.148 4.148
23 C -0.161 4.161
24 C -0.148 4.148
25 C -0.152 4.152
26 C -0.181 4.181
27 C -0.031 4.031
28 O -0.288 6.288
29 C -0.019 4.019
30 H 0.082 0.918
31 H 0.083 0.917
32 H 0.122 0.878
33 H 0.089 0.911
34 H 0.102 0.898
35 H 0.246 0.754
36 H 0.079 0.921
37 H 0.137 0.863
38 H 0.129 0.871
39 H 0.126 0.874
40 H 0.127 0.873
41 H 0.127 0.873
42 H 0.120 0.880
43 H 0.112 0.888
44 H 0.114 0.886
45 H 0.085 0.915
46 H 0.107 0.893
47 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -3.449 11.037 2.067 11.746
hybrid contribution -1.484 -0.416 -0.122 1.546
sum -4.934 10.621 1.945 11.871
Atomic orbital electron populations
1.23339 0.75798 1.04196 1.02445 1.86462 1.23854 1.32669 1.83536
1.23152 0.91122 0.81587 0.71732 1.90612 1.66675 1.36308 1.45431
1.22275 0.88654 0.99322 0.99933 1.21196 0.99830 0.83295 0.94183
1.46054 1.53813 1.09619 1.29155 1.21473 0.79034 0.87963 0.79263
1.90585 1.38102 1.77233 1.38080 1.18343 0.98269 0.89101 0.93230
0.92003 1.20526 0.95320 1.30270 1.08427 0.89800 1.25024 0.98209
0.94609 0.94218 1.69865 1.36620 1.34190 1.10659 0.87060 0.86181
0.78625 0.79368 1.19324 1.20989 1.18509 1.19959 0.93103 0.95676
0.94088 1.20884 0.96612 0.96224 0.95230 1.21041 0.98412 1.00509
0.94881 1.20871 0.93134 1.02720 0.99341 1.20882 0.96147 1.01151
0.96663 1.20989 0.98530 1.01363 0.94273 1.23101 1.02283 0.92979
0.99728 1.23461 0.97562 0.92075 0.90024 1.89170 1.85611 1.22211
1.31807 1.23599 1.02131 0.89684 0.86438 0.91758 0.91717 0.87751
0.91144 0.89785 0.75378 0.92054 0.86322 0.87117 0.87352 0.87295
0.87328 0.87960 0.88758 0.88609 0.91512 0.89253 0.87639
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.42 10.56 101.05 1.07 1.48 16
2 O -0.35 -5.09 7.91 -39.25 -0.31 -5.40 16
3 C 0.48 7.02 6.53 36.01 0.24 7.25 16
4 O -0.50 -7.95 15.03 -18.75 -0.28 -8.24 16
5 C -0.10 -1.30 0.72 -154.09 -0.11 -1.41 16
6 C 0.14 2.02 4.31 -4.05 -0.02 2.01 16
7 N -0.73 -12.97 4.93 -60.30 -0.30 -13.27 16
8 C 0.53 11.24 6.99 -10.99 -0.08 11.17 16
9 O -0.56 -12.85 15.34 5.56 0.09 -12.76 16
10 C 0.03 0.71 2.20 -94.08 -0.21 0.51 16
11 H 0.06 1.33 4.73 -51.93 -0.25 1.08 16
12 C -0.51 -12.74 8.22 -34.45 -0.28 -13.02 16
13 H 0.08 2.34 7.67 -52.48 -0.40 1.93 16
14 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16
15 N -0.88 -24.00 13.96 55.43 0.77 -23.22 16
16 Si 0.86 18.82 26.86 -169.99 -4.57 14.26 16
17 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16
18 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16
19 H -0.26 -5.57 6.95 56.52 0.39 -5.18 16
20 C -0.03 -0.60 4.39 -104.62 -0.46 -1.06 16
21 C -0.07 -1.51 8.19 -39.58 -0.32 -1.84 16
22 C -0.13 -2.39 10.05 -39.58 -0.40 -2.78 16
23 C -0.14 -2.41 10.05 -39.58 -0.40 -2.81 16
24 C -0.13 -2.27 10.05 -39.58 -0.40 -2.67 16
25 C -0.13 -2.63 9.67 -39.59 -0.38 -3.01 16
26 C -0.14 -1.51 6.32 -25.16 -0.16 -1.67 16
27 C 0.05 0.46 7.63 37.93 0.29 0.75 16
28 O -0.37 -4.98 11.65 -35.23 -0.41 -5.39 16
29 C 0.06 0.78 6.35 37.94 0.24 1.02 16
30 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16
31 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16
32 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16
33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
34 H 0.08 1.18 8.08 -51.93 -0.42 0.76 16
35 H 0.41 7.23 6.13 -40.82 -0.25 6.98 16
36 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16
37 H 0.12 2.62 7.53 -52.48 -0.40 2.22 16
38 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16
39 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16
40 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16
41 H 0.11 1.98 7.96 -52.49 -0.42 1.56 16
42 H 0.10 1.16 6.51 -51.93 -0.34 0.83 16
43 H 0.09 0.81 7.73 -51.93 -0.40 0.41 16
44 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16
45 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16
46 H 0.09 1.18 7.83 -51.93 -0.41 0.77 16
47 H 0.11 1.46 7.73 -51.93 -0.40 1.06 16
LS Contribution 387.73 15.07 5.84 5.84
Total: -1.00 -30.98 387.73 -7.27 -38.25
By element:
Atomic # 1 Polarization: 20.57 SS G_CDS: -6.63 Total: 13.95 kcal
Atomic # 6 Polarization: -2.54 SS G_CDS: -1.48 Total: -4.02 kcal
Atomic # 7 Polarization: -36.97 SS G_CDS: 0.48 Total: -36.49 kcal
Atomic # 8 Polarization: -30.87 SS G_CDS: -0.92 Total: -31.79 kcal
Atomic # 14 Polarization: 18.82 SS G_CDS: -4.57 Total: 14.26 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -30.98 -7.27 -38.25 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001361725844.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -102.637 kcal
(2) G-P(sol) polarization free energy of solvation -30.980 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.617 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal
(6) G-S(sol) free energy of system = (1) + (5) -140.886 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds