Wall clock time and date at job start Wed Apr 1 2020 05:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 117.00242 * 2 1 4 4 O 1.20820 * 119.99763 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99617 * 180.02562 * 3 2 1 6 6 C 1.52994 * 110.45998 * 300.70059 * 5 3 2 7 7 N 1.46499 * 109.47466 * 57.39461 * 6 5 3 8 8 C 1.34774 * 120.00298 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99740 * 359.97438 * 8 7 6 10 10 C 1.50696 * 119.99827 * 180.02562 * 8 7 6 11 11 H 1.08998 * 109.47398 * 311.37365 * 10 8 7 12 12 C 1.50698 * 109.47494 * 71.37693 * 10 8 7 13 13 H 1.08003 * 119.99720 * 54.59977 * 12 10 8 14 14 C 1.37867 * 120.00445 * 234.59984 * 12 10 8 15 15 N 1.31515 * 120.00480 * 171.82598 * 14 12 10 16 16 Si 1.86811 * 119.99843 * 351.82624 * 14 12 10 17 17 H 1.48499 * 109.46793 * 84.53943 * 16 14 12 18 18 H 1.48494 * 109.47191 * 204.54181 * 16 14 12 19 19 H 1.48499 * 109.46833 * 324.54313 * 16 14 12 20 20 C 1.50707 * 109.46776 * 191.37765 * 10 8 7 21 21 C 1.38237 * 119.99727 * 291.76871 * 20 10 8 22 22 C 1.38242 * 119.99559 * 179.74668 * 21 20 10 23 23 C 1.38231 * 119.99812 * 0.53156 * 22 21 20 24 24 C 1.38235 * 119.99986 * 359.74120 * 23 22 21 25 25 C 1.38231 * 119.99800 * 112.04696 * 20 10 8 26 26 C 1.54514 * 110.50932 * 178.09230 * 5 3 2 27 27 C 1.54472 * 104.06486 * 241.22182 * 26 5 3 28 28 O 1.44426 * 104.80703 * 23.97611 * 27 26 5 29 29 C 1.44424 * 105.27421 * 319.49080 * 28 27 26 30 30 H 1.09003 * 109.46485 * 300.00195 * 1 2 3 31 31 H 1.08996 * 109.46907 * 59.99899 * 1 2 3 32 32 H 1.08994 * 109.47553 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46966 * 297.39388 * 6 5 3 34 34 H 1.09000 * 109.47205 * 177.40314 * 6 5 3 35 35 H 0.97002 * 119.99274 * 0.02562 * 7 6 5 36 36 H 0.97003 * 120.00185 * 180.02562 * 15 14 12 37 37 H 1.08003 * 120.00220 * 359.97438 * 21 20 10 38 38 H 1.07994 * 119.99939 * 180.29520 * 22 21 20 39 39 H 1.08004 * 119.99583 * 179.77472 * 23 22 21 40 40 H 1.08007 * 119.99795 * 180.02562 * 24 23 22 41 41 H 1.07998 * 120.00151 * 359.97438 * 25 20 10 42 42 H 1.09003 * 110.51028 * 359.86669 * 26 5 3 43 43 H 1.09004 * 110.50865 * 122.43141 * 26 5 3 44 44 H 1.08997 * 110.37503 * 142.81102 * 27 26 5 45 45 H 1.09007 * 110.37190 * 265.03932 * 27 26 5 46 46 H 1.09002 * 110.37444 * 281.68021 * 29 28 27 47 47 H 1.08997 * 110.37406 * 159.33963 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.1392 0.5715 1.2316 7 7 3.6847 -0.8210 1.2546 8 6 4.0667 -1.6382 2.2560 9 8 4.7871 -1.2207 3.1379 10 6 3.5997 -3.0707 2.2793 11 1 2.5226 -3.1045 2.1155 12 6 4.2978 -3.8445 1.1908 13 1 5.3765 -3.8491 1.1383 14 6 3.5595 -4.5466 0.2619 15 7 4.1549 -5.0878 -0.7784 16 14 1.7133 -4.7293 0.4810 17 1 1.0285 -3.5342 -0.0740 18 1 1.2477 -5.9439 -0.2351 19 1 1.3965 -4.8547 1.9264 20 6 3.9236 -3.6829 3.6178 21 6 5.2400 -3.9083 3.9743 22 6 5.5373 -4.4650 5.2042 23 6 4.5178 -4.8065 6.0729 24 6 3.2011 -4.5863 5.7140 25 6 2.9040 -4.0244 4.4865 26 6 4.0314 2.7474 -0.0486 27 6 4.8341 2.8448 -1.3649 28 8 4.3222 1.7752 -2.1894 29 6 4.1432 0.6566 -1.2936 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 3.7964 1.0805 2.1325 34 1 5.2281 0.5978 1.1915 35 1 3.1088 -1.1549 0.5490 36 1 3.6354 -5.5814 -1.4321 37 1 6.0364 -3.6460 3.2935 38 1 6.5660 -4.6367 5.4847 39 1 4.7500 -5.2448 7.0323 40 1 2.4045 -4.8527 6.3930 41 1 1.8754 -3.8520 4.2062 42 1 3.1728 3.4184 -0.0744 43 1 4.6674 2.9752 0.8069 44 1 4.6621 3.8087 -1.8438 45 1 5.8975 2.7020 -1.1723 46 1 5.1004 0.1763 -1.0903 47 1 3.4404 -0.0605 -1.7177 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361725844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:02 Heat of formation + Delta-G solvation = -160.322641 kcal Electronic energy + Delta-G solvation = -31979.131452 eV Core-core repulsion = 27705.206715 eV Total energy + Delta-G solvation = -4273.924737 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.36888 -40.88072 -40.12966 -39.34971 -37.70255 -36.28073 -35.47771 -33.49523 -33.16567 -31.60269 -30.75651 -29.53487 -28.69360 -27.02330 -25.35140 -24.65323 -23.64619 -23.33861 -22.43352 -21.25179 -20.72538 -19.11635 -18.79211 -18.30354 -18.12922 -17.65139 -17.47002 -16.97534 -16.69713 -16.44023 -16.23604 -15.93657 -15.81866 -15.56715 -15.32199 -14.85912 -14.68594 -14.41689 -14.25588 -14.16548 -13.98236 -13.69971 -13.64896 -13.38885 -13.22139 -12.99875 -12.85969 -12.69164 -12.57255 -12.32595 -12.11145 -12.04768 -11.91271 -11.87968 -11.70981 -11.67785 -11.37300 -10.86822 -10.85066 -10.55293 -9.99440 -9.61641 -9.34995 -8.31942 -6.39009 0.66602 0.73047 0.90115 1.34832 1.41823 1.48961 1.49907 1.89009 2.32220 2.33144 2.79491 3.00321 3.11819 3.19530 3.40989 3.56069 3.66026 4.03195 4.09954 4.17335 4.21248 4.24659 4.25443 4.30147 4.36369 4.39891 4.43312 4.48310 4.53002 4.58216 4.63099 4.66208 4.76137 4.79748 4.86050 4.91415 4.98472 5.21586 5.23097 5.35313 5.41303 5.54337 5.63626 5.72425 5.77073 5.97635 6.23234 6.33559 6.46196 6.62973 6.69372 7.24780 7.44485 8.82503 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011150 B = 0.004060 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.552705 B = 6895.300625 C = 7559.612104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.480 3.520 4 O -0.517 6.517 5 C -0.094 4.094 6 C 0.140 3.860 7 N -0.723 5.723 8 C 0.531 3.469 9 O -0.584 6.584 10 C 0.034 3.966 11 H 0.070 0.930 12 C -0.503 4.503 13 H 0.037 0.963 14 C 0.037 3.963 15 N -0.926 5.926 16 Si 0.915 3.085 17 H -0.237 1.237 18 H -0.289 1.289 19 H -0.249 1.249 20 C -0.058 4.058 21 C -0.101 4.101 22 C -0.134 4.134 23 C -0.136 4.136 24 C -0.125 4.125 25 C -0.148 4.148 26 C -0.136 4.136 27 C 0.041 3.959 28 O -0.388 6.388 29 C 0.060 3.940 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.409 0.591 36 H 0.270 0.730 37 H 0.090 0.910 38 H 0.133 0.867 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.122 0.878 42 H 0.097 0.903 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.328 11.225 3.793 12.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.323 3.677 4 O -0.406 6.406 5 C -0.096 4.096 6 C 0.017 3.983 7 N -0.377 5.377 8 C 0.320 3.680 9 O -0.464 6.464 10 C 0.012 3.988 11 H 0.088 0.912 12 C -0.540 4.540 13 H 0.055 0.945 14 C -0.164 4.164 15 N -0.563 5.563 16 Si 0.738 3.262 17 H -0.161 1.161 18 H -0.216 1.216 19 H -0.173 1.173 20 C -0.059 4.059 21 C -0.119 4.119 22 C -0.152 4.152 23 C -0.153 4.153 24 C -0.143 4.143 25 C -0.166 4.166 26 C -0.174 4.174 27 C -0.035 4.035 28 O -0.307 6.307 29 C -0.017 4.017 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.138 0.862 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.247 0.753 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.151 0.849 39 H 0.167 0.833 40 H 0.165 0.835 41 H 0.140 0.860 42 H 0.115 0.885 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.129 11.728 3.985 13.407 hybrid contribution -0.876 -0.612 -0.663 1.258 sum -6.005 11.117 3.322 13.064 Atomic orbital electron populations 1.23600 0.74323 1.05497 1.03185 1.86444 1.25503 1.32748 1.83346 1.23375 0.91587 0.81427 0.71266 1.90599 1.67102 1.36672 1.46206 1.22268 0.87829 1.00783 0.98741 1.21342 1.00248 0.81473 0.95273 1.46005 1.52994 1.10732 1.27944 1.21254 0.78948 0.88027 0.79781 1.90558 1.39075 1.77603 1.39177 1.18277 0.98185 0.89428 0.92886 0.91179 1.20432 0.93293 1.30731 1.09553 0.94474 1.25769 1.02990 0.94089 0.93561 1.70004 1.38614 1.35794 1.11922 0.86187 0.80600 0.79485 0.79968 1.16074 1.21554 1.17292 1.20024 0.94007 0.97269 0.94613 1.20843 0.96028 0.98517 0.96531 1.21352 1.00398 0.99604 0.93875 1.21349 0.92494 1.01154 1.00348 1.21349 0.97563 0.99299 0.96086 1.21247 0.98567 1.01733 0.95091 1.23131 1.02482 0.90808 1.00996 1.23721 0.98312 0.91977 0.89471 1.89151 1.86008 1.22889 1.32692 1.23508 1.01728 0.89838 0.86664 0.91147 0.90950 0.86212 0.90609 0.89209 0.75287 0.92035 0.89191 0.84865 0.83302 0.83454 0.86039 0.88483 0.86522 0.86649 0.89819 0.89528 0.88703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.36 -10.27 7.91 -51.39 -0.41 -10.68 16 3 C 0.48 13.59 6.53 71.24 0.46 14.06 16 4 O -0.52 -15.82 15.03 21.98 0.33 -15.49 16 5 C -0.09 -2.38 0.72 -51.91 -0.04 -2.41 16 6 C 0.14 4.00 4.31 86.38 0.37 4.37 16 7 N -0.72 -25.82 4.93 -463.07 -2.28 -28.10 16 8 C 0.53 22.83 6.99 87.66 0.61 23.45 16 9 O -0.58 -27.28 15.34 -3.03 -0.05 -27.33 16 10 C 0.03 1.52 2.20 -13.03 -0.03 1.50 16 11 H 0.07 2.97 4.73 -2.39 -0.01 2.96 16 12 C -0.50 -26.37 8.22 25.60 0.21 -26.16 16 13 H 0.04 2.24 7.67 -2.91 -0.02 2.22 16 14 C 0.04 1.92 5.47 84.65 0.46 2.38 16 15 N -0.93 -52.63 13.96 21.44 0.30 -52.33 16 16 Si 0.92 38.34 26.86 68.60 1.84 40.18 16 17 H -0.24 -8.71 7.11 99.48 0.71 -8.00 16 18 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.25 -9.92 6.95 99.48 0.69 -9.23 16 20 C -0.06 -2.55 4.39 -19.86 -0.09 -2.64 16 21 C -0.10 -4.40 8.19 22.27 0.18 -4.22 16 22 C -0.13 -4.77 10.05 22.27 0.22 -4.54 16 23 C -0.14 -4.12 10.05 22.27 0.22 -3.90 16 24 C -0.13 -3.91 10.05 22.27 0.22 -3.69 16 25 C -0.15 -5.57 9.67 22.27 0.22 -5.35 16 26 C -0.14 -2.64 6.32 31.61 0.20 -2.44 16 27 C 0.04 0.76 7.63 72.48 0.55 1.31 16 28 O -0.39 -10.19 11.65 -148.98 -1.74 -11.93 16 29 C 0.06 1.59 6.35 72.49 0.46 2.05 16 30 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 31 H 0.07 1.44 8.13 -2.39 -0.02 1.42 16 32 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.09 2.48 8.08 -2.39 -0.02 2.46 16 35 H 0.41 14.55 6.13 -92.71 -0.57 13.99 16 36 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 37 H 0.09 4.30 7.53 -2.91 -0.02 4.28 16 38 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 39 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 40 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 41 H 0.12 4.12 7.96 -2.91 -0.02 4.10 16 42 H 0.10 2.04 6.51 -2.39 -0.02 2.03 16 43 H 0.12 1.73 7.73 -2.38 -0.02 1.71 16 44 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 46 H 0.09 2.32 7.83 -2.39 -0.02 2.30 16 47 H 0.09 2.69 7.73 -2.39 -0.02 2.67 16 Total: -1.00 -69.86 387.73 3.86 -66.00 By element: Atomic # 1 Polarization: 43.73 SS G_CDS: 0.41 Total: 44.14 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 5.45 Total: -4.46 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -1.98 Total: -80.43 kcal Atomic # 8 Polarization: -63.56 SS G_CDS: -1.86 Total: -65.42 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 1.84 Total: 40.18 kcal Total: -69.86 3.86 -66.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361725844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.322 kcal (2) G-P(sol) polarization free energy of solvation -69.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds