Wall clock time and date at job start Wed Apr 1 2020 04:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 114.00108 * 2 1 4 4 C 1.54313 * 111.88326 * 298.90114 * 3 2 1 5 5 C 1.55163 * 104.55175 * 260.41512 * 4 3 2 6 6 C 1.54897 * 102.57475 * 322.41843 * 5 4 3 7 7 C 1.54049 * 104.20710 * 38.65844 * 6 5 4 8 8 C 1.50710 * 111.89336 * 98.49040 * 7 6 5 9 9 O 1.21285 * 119.99767 * 241.01553 * 8 7 6 10 10 N 1.34773 * 119.99877 * 61.00751 * 8 7 6 11 11 C 1.39995 * 119.99972 * 175.49688 * 10 8 7 12 12 C 1.38923 * 120.00091 * 214.85262 * 11 10 8 13 13 C 1.38000 * 119.99466 * 179.78903 * 12 11 10 14 14 C 1.38910 * 120.00283 * 0.46223 * 13 12 11 15 15 O 1.35780 * 120.00082 * 179.76815 * 14 13 12 16 16 C 1.34805 * 117.00154 * 185.36446 * 15 14 13 17 17 H 1.08001 * 120.00306 * 354.96829 * 16 15 14 18 18 C 1.38642 * 119.99972 * 174.96071 * 16 15 14 19 19 N 1.31569 * 119.99770 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99971 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47178 * 60.00069 * 20 18 16 22 22 H 1.48495 * 109.46875 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47033 * 300.00090 * 20 18 16 24 24 C 1.38906 * 120.00190 * 359.78913 * 14 13 12 25 25 C 1.38003 * 120.00462 * 359.97438 * 24 14 13 26 26 C 1.54608 * 109.09811 * 222.90487 * 7 6 5 27 27 C 1.54996 * 102.07614 * 134.97888 * 26 7 6 28 28 O 1.43826 * 111.35192 * 60.59005 * 3 2 1 29 29 H 1.08998 * 109.47334 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47504 * 300.00208 * 1 2 3 31 31 H 1.09004 * 109.47031 * 59.99894 * 1 2 3 32 32 H 1.08997 * 110.42235 * 19.17435 * 4 3 2 33 33 H 1.08995 * 110.42424 * 141.53885 * 4 3 2 34 34 H 1.09000 * 110.90243 * 204.12205 * 5 4 3 35 35 H 1.09004 * 110.76454 * 80.64203 * 5 4 3 36 36 H 1.09005 * 110.50090 * 279.93980 * 6 5 4 37 37 H 1.08998 * 110.50525 * 157.37979 * 6 5 4 38 38 H 0.97002 * 120.00263 * 355.49852 * 10 8 7 39 39 H 1.07994 * 119.99929 * 0.02562 * 12 11 10 40 40 H 1.07998 * 119.99835 * 180.23026 * 13 12 11 41 41 H 0.97003 * 119.99766 * 179.97438 * 19 18 16 42 42 H 1.08001 * 119.99978 * 179.97438 * 24 14 13 43 43 H 1.07993 * 120.00172 * 179.97438 * 25 24 14 44 44 H 1.09001 * 110.91463 * 253.17759 * 26 7 6 45 45 H 1.09003 * 110.90566 * 16.74807 * 26 7 6 46 46 H 1.08994 * 110.61916 * 81.11534 * 27 26 7 47 47 H 1.09000 * 110.61690 * 203.95873 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.6119 2.1123 -1.2536 5 6 2.8312 1.9825 -2.2044 6 6 4.0300 2.0398 -1.2252 7 6 3.5562 1.2353 0.0000 8 6 4.0772 -0.1787 -0.0204 9 8 3.3015 -1.1104 -0.0541 10 7 5.4052 -0.4079 -0.0014 11 6 5.8882 -1.7197 0.0749 12 6 7.0513 -1.9915 0.7842 13 6 7.5249 -3.2853 0.8630 14 6 6.8439 -4.3143 0.2250 15 8 7.3125 -5.5865 0.2986 16 6 6.6695 -6.5188 -0.4326 17 1 5.7743 -6.2557 -0.9765 18 6 7.1574 -7.8155 -0.4864 19 7 8.2477 -8.1361 0.1765 20 14 6.2668 -9.1072 -1.5002 21 1 6.2266 -8.6797 -2.9216 22 1 6.9848 -10.4025 -1.3924 23 1 4.8806 -9.2663 -0.9917 24 6 5.6838 -4.0417 -0.4886 25 6 5.2073 -2.7487 -0.5634 26 6 3.9694 1.9845 1.2878 27 6 2.6774 1.9016 2.1399 28 8 1.6223 2.0514 1.1669 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 0.7225 1.6835 -1.7152 33 1 1.4391 3.1569 -0.9946 34 1 2.8664 2.8147 -2.9075 35 1 2.8093 1.0295 -2.7330 36 1 4.2452 3.0710 -0.9451 37 1 4.9094 1.5747 -1.6707 38 1 6.0264 0.3361 -0.0405 39 1 7.5828 -1.1909 1.2771 40 1 8.4271 -3.4973 1.4175 41 1 8.5889 -9.0433 0.1391 42 1 5.1545 -4.8417 -0.9850 43 1 4.3056 -2.5367 -1.1186 44 1 4.7964 1.4773 1.7847 45 1 4.2262 3.0211 1.0693 46 1 2.6067 0.9341 2.6369 47 1 2.6468 2.7102 2.8703 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434653770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:30 Heat of formation + Delta-G solvation = -111.179257 kcal Electronic energy + Delta-G solvation = -31463.549839 eV Core-core repulsion = 27191.756119 eV Total energy + Delta-G solvation = -4271.793720 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.49509 -39.53209 -38.40163 -36.69169 -36.41113 -35.72060 -33.88856 -32.32701 -31.99946 -30.17548 -28.44824 -27.92498 -27.41629 -26.29925 -25.25611 -23.16282 -22.36003 -22.04402 -21.28717 -20.55002 -19.45594 -18.32900 -17.82336 -17.30729 -16.79850 -16.41757 -16.27755 -15.65366 -15.10280 -14.88949 -14.56360 -14.49146 -14.34271 -14.23292 -13.87592 -13.63762 -13.54404 -13.49991 -12.87826 -12.80359 -12.72574 -12.51981 -12.43769 -11.83090 -11.72256 -11.67450 -11.54655 -11.51323 -11.43100 -11.35492 -11.15533 -10.98057 -10.86476 -10.72276 -10.42990 -10.28761 -9.73839 -9.61404 -9.43074 -9.06915 -8.66128 -8.17305 -6.90290 -6.42015 -3.99552 2.11717 2.24755 2.85340 3.15743 3.16806 3.20001 3.20233 3.32939 3.55361 3.98627 4.00296 4.07680 4.52751 4.56862 4.61877 4.71270 4.72744 4.88000 4.96275 5.11586 5.13474 5.18510 5.25453 5.28413 5.37079 5.39782 5.42259 5.44937 5.50350 5.57510 5.61998 5.69812 5.73048 5.77958 5.79011 5.90227 6.17209 6.22027 6.36982 6.40067 6.76192 6.88537 7.03883 7.13248 7.21944 7.33862 7.47159 7.75040 7.81997 8.03278 8.47434 9.03843 9.73516 10.75952 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017786 B = 0.002566 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.925341 B =10910.063447 C =11592.037917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.328 6.328 3 C 0.268 3.732 4 C -0.141 4.141 5 C -0.120 4.120 6 C -0.111 4.111 7 C -0.095 4.095 8 C 0.520 3.480 9 O -0.478 6.478 10 N -0.664 5.664 11 C 0.037 3.963 12 C -0.094 4.094 13 C -0.178 4.178 14 C 0.146 3.854 15 O -0.177 6.177 16 C -0.391 4.391 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.220 4.220 25 C -0.064 4.064 26 C -0.145 4.145 27 C 0.049 3.951 28 O -0.382 6.382 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.398 0.602 39 H 0.113 0.887 40 H 0.121 0.879 41 H 0.270 0.730 42 H 0.130 0.870 43 H 0.125 0.875 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.066 0.934 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.844 24.440 -1.431 26.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.247 6.247 3 C 0.189 3.811 4 C -0.178 4.178 5 C -0.158 4.158 6 C -0.149 4.149 7 C -0.098 4.098 8 C 0.305 3.695 9 O -0.349 6.349 10 N -0.309 5.309 11 C -0.055 4.055 12 C -0.115 4.115 13 C -0.198 4.198 14 C 0.092 3.908 15 O -0.081 6.081 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.240 4.240 25 C -0.084 4.084 26 C -0.183 4.183 27 C -0.027 4.027 28 O -0.303 6.303 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.232 0.768 39 H 0.131 0.869 40 H 0.139 0.861 41 H 0.080 0.920 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.084 0.916 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.202 23.388 -1.254 25.547 hybrid contribution -0.195 -0.173 -0.406 0.483 sum -10.397 23.215 -1.660 25.491 Atomic orbital electron populations 1.22748 0.82298 1.02527 0.99797 1.88626 1.18678 1.23752 1.93650 1.23515 0.89766 0.81790 0.85980 1.22903 0.99543 1.01060 0.94323 1.22543 0.93140 1.02941 0.97155 1.22512 0.99016 0.99840 0.93548 1.22492 0.94318 0.94595 0.98445 1.19770 0.82308 0.89672 0.77800 1.90796 1.55260 1.43520 1.45325 1.43190 1.06570 1.07223 1.73964 1.17235 0.98604 0.83641 1.06009 1.20340 0.96309 0.95949 0.98861 1.19978 1.02455 0.90569 1.06818 1.19406 0.91888 0.86189 0.93308 1.83969 1.52242 1.12065 1.59786 1.21290 1.09310 0.88590 1.27507 0.89089 1.25273 0.96330 0.97306 0.97563 1.70036 1.20434 1.20125 1.39311 0.85791 0.79054 0.79060 0.79617 1.19483 1.20304 1.19463 1.21109 0.99124 0.96928 1.06815 1.20858 0.98881 0.91626 0.97030 1.23363 0.99556 1.01212 0.94142 1.23550 0.84957 1.02342 0.91855 1.88912 1.44638 1.70049 1.26655 0.89649 0.93780 0.94364 0.90038 0.89480 0.90297 0.90541 0.89697 0.90210 0.76776 0.86854 0.86128 0.92010 0.85271 0.85694 0.89217 0.88931 0.91592 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.60 101.05 1.07 1.34 16 2 O -0.33 -4.93 7.35 -67.78 -0.50 -5.43 16 3 C 0.27 3.21 1.15 -25.12 -0.03 3.18 16 4 C -0.14 -1.31 6.11 -24.90 -0.15 -1.46 16 5 C -0.12 -0.99 6.93 -24.59 -0.17 -1.16 16 6 C -0.11 -0.88 5.91 -25.18 -0.15 -1.03 16 7 C -0.09 -1.01 0.72 -153.34 -0.11 -1.12 16 8 C 0.52 7.59 6.36 -10.98 -0.07 7.52 16 9 O -0.48 -9.08 11.24 -19.33 -0.22 -9.29 16 10 N -0.66 -9.04 4.96 -9.82 -0.05 -9.09 16 11 C 0.04 0.66 6.30 -83.62 -0.53 0.14 16 12 C -0.09 -1.64 9.96 -39.41 -0.39 -2.04 16 13 C -0.18 -3.73 9.98 -39.42 -0.39 -4.13 16 14 C 0.15 3.58 6.65 -39.09 -0.26 3.32 16 15 O -0.18 -5.11 9.75 0.03 0.00 -5.11 16 16 C -0.39 -11.11 9.48 30.88 0.29 -10.82 16 17 H 0.09 2.42 5.20 -52.49 -0.27 2.14 16 18 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 19 N -0.86 -25.55 13.67 55.48 0.76 -24.79 16 20 Si 0.94 20.90 29.55 -169.99 -5.02 15.87 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 C -0.22 -5.05 9.16 -39.42 -0.36 -5.41 16 25 C -0.06 -1.31 8.69 -39.41 -0.34 -1.65 16 26 C -0.14 -1.20 6.28 -24.83 -0.16 -1.35 16 27 C 0.05 0.48 7.72 38.21 0.29 0.77 16 28 O -0.38 -4.49 10.29 -58.74 -0.60 -5.10 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.04 0.50 7.72 -51.93 -0.40 0.10 16 31 H 0.04 0.38 6.28 -51.93 -0.33 0.05 16 32 H 0.08 0.75 6.11 -51.93 -0.32 0.43 16 33 H 0.09 0.71 7.99 -51.93 -0.42 0.30 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.48 7.22 -51.93 -0.37 0.10 16 37 H 0.08 0.61 7.52 -51.93 -0.39 0.22 16 38 H 0.40 3.93 8.57 -40.82 -0.35 3.58 16 39 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 40 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.13 2.99 5.63 -52.49 -0.30 2.70 16 43 H 0.13 2.57 6.23 -52.49 -0.33 2.24 16 44 H 0.09 0.71 7.76 -51.93 -0.40 0.31 16 45 H 0.09 0.54 7.23 -51.93 -0.38 0.16 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -34.82 374.22 -7.88 -42.70 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.34 Total: 7.48 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -1.55 Total: -12.89 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.71 Total: -33.88 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -1.32 Total: -24.93 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.82 -7.88 -42.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434653770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.474 kcal (2) G-P(sol) polarization free energy of solvation -34.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds