Wall clock time and date at job start Wed Apr 1 2020 04:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 114.00108 * 2 1 4 4 C 1.54313 * 111.88326 * 298.90114 * 3 2 1 5 5 C 1.55163 * 104.55175 * 260.41512 * 4 3 2 6 6 C 1.54897 * 102.57475 * 322.41843 * 5 4 3 7 7 C 1.54049 * 104.20710 * 38.65844 * 6 5 4 8 8 C 1.50710 * 111.89336 * 98.49040 * 7 6 5 9 9 O 1.21285 * 119.99767 * 241.01553 * 8 7 6 10 10 N 1.34773 * 119.99877 * 61.00751 * 8 7 6 11 11 C 1.39995 * 119.99972 * 175.49688 * 10 8 7 12 12 C 1.38923 * 120.00091 * 214.85262 * 11 10 8 13 13 C 1.38000 * 119.99466 * 179.78903 * 12 11 10 14 14 C 1.38910 * 120.00283 * 0.46223 * 13 12 11 15 15 O 1.35780 * 120.00082 * 179.76815 * 14 13 12 16 16 C 1.34805 * 117.00154 * 185.36446 * 15 14 13 17 17 H 1.08001 * 120.00306 * 354.96829 * 16 15 14 18 18 C 1.38642 * 119.99972 * 174.96071 * 16 15 14 19 19 N 1.31569 * 119.99770 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99971 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47178 * 60.00069 * 20 18 16 22 22 H 1.48495 * 109.46875 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47033 * 300.00090 * 20 18 16 24 24 C 1.38906 * 120.00190 * 359.78913 * 14 13 12 25 25 C 1.38003 * 120.00462 * 359.97438 * 24 14 13 26 26 C 1.54608 * 109.09811 * 222.90487 * 7 6 5 27 27 C 1.54996 * 102.07614 * 134.97888 * 26 7 6 28 28 O 1.43826 * 111.35192 * 60.59005 * 3 2 1 29 29 H 1.08998 * 109.47334 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47504 * 300.00208 * 1 2 3 31 31 H 1.09004 * 109.47031 * 59.99894 * 1 2 3 32 32 H 1.08997 * 110.42235 * 19.17435 * 4 3 2 33 33 H 1.08995 * 110.42424 * 141.53885 * 4 3 2 34 34 H 1.09000 * 110.90243 * 204.12205 * 5 4 3 35 35 H 1.09004 * 110.76454 * 80.64203 * 5 4 3 36 36 H 1.09005 * 110.50090 * 279.93980 * 6 5 4 37 37 H 1.08998 * 110.50525 * 157.37979 * 6 5 4 38 38 H 0.97002 * 120.00263 * 355.49852 * 10 8 7 39 39 H 1.07994 * 119.99929 * 0.02562 * 12 11 10 40 40 H 1.07998 * 119.99835 * 180.23026 * 13 12 11 41 41 H 0.97003 * 119.99766 * 179.97438 * 19 18 16 42 42 H 1.08001 * 119.99978 * 179.97438 * 24 14 13 43 43 H 1.07993 * 120.00172 * 179.97438 * 25 24 14 44 44 H 1.09001 * 110.91463 * 253.17759 * 26 7 6 45 45 H 1.09003 * 110.90566 * 16.74807 * 26 7 6 46 46 H 1.08994 * 110.61916 * 81.11534 * 27 26 7 47 47 H 1.09000 * 110.61690 * 203.95873 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.6119 2.1123 -1.2536 5 6 2.8312 1.9825 -2.2044 6 6 4.0300 2.0398 -1.2252 7 6 3.5562 1.2353 0.0000 8 6 4.0772 -0.1787 -0.0204 9 8 3.3015 -1.1104 -0.0541 10 7 5.4052 -0.4079 -0.0014 11 6 5.8882 -1.7197 0.0749 12 6 7.0513 -1.9915 0.7842 13 6 7.5249 -3.2853 0.8630 14 6 6.8439 -4.3143 0.2250 15 8 7.3125 -5.5865 0.2986 16 6 6.6695 -6.5188 -0.4326 17 1 5.7743 -6.2557 -0.9765 18 6 7.1574 -7.8155 -0.4864 19 7 8.2477 -8.1361 0.1765 20 14 6.2668 -9.1072 -1.5002 21 1 6.2266 -8.6797 -2.9216 22 1 6.9848 -10.4025 -1.3924 23 1 4.8806 -9.2663 -0.9917 24 6 5.6838 -4.0417 -0.4886 25 6 5.2073 -2.7487 -0.5634 26 6 3.9694 1.9845 1.2878 27 6 2.6774 1.9016 2.1399 28 8 1.6223 2.0514 1.1669 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 0.7225 1.6835 -1.7152 33 1 1.4391 3.1569 -0.9946 34 1 2.8664 2.8147 -2.9075 35 1 2.8093 1.0295 -2.7330 36 1 4.2452 3.0710 -0.9451 37 1 4.9094 1.5747 -1.6707 38 1 6.0264 0.3361 -0.0405 39 1 7.5828 -1.1909 1.2771 40 1 8.4271 -3.4973 1.4175 41 1 8.5889 -9.0433 0.1391 42 1 5.1545 -4.8417 -0.9850 43 1 4.3056 -2.5367 -1.1186 44 1 4.7964 1.4773 1.7847 45 1 4.2262 3.0211 1.0693 46 1 2.6067 0.9341 2.6369 47 1 2.6468 2.7102 2.8703 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434653770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:29 Heat of formation + Delta-G solvation = -134.489098 kcal Electronic energy + Delta-G solvation = -31464.560629 eV Core-core repulsion = 27191.756119 eV Total energy + Delta-G solvation = -4272.804511 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.41935 -40.99801 -39.94712 -38.04144 -37.62509 -36.51321 -35.32231 -34.18297 -32.96357 -31.85841 -29.74923 -28.86885 -28.30069 -27.37140 -27.08696 -24.36425 -23.76584 -23.14452 -22.33891 -21.58794 -20.59342 -19.92491 -19.28433 -18.66528 -18.03684 -17.66751 -17.24439 -16.72238 -16.37339 -16.23260 -15.90366 -15.67962 -15.49176 -15.41480 -15.28331 -15.10598 -14.86441 -14.64272 -14.37498 -14.18239 -13.60123 -13.56324 -13.45371 -13.24675 -13.20809 -13.12520 -12.70432 -12.52311 -12.49408 -12.40874 -12.27329 -12.15688 -12.05773 -11.85202 -11.55813 -11.39891 -11.14801 -11.04361 -10.65469 -10.57159 -10.38734 -9.82947 -8.60398 -8.47719 -6.14500 0.51410 0.56633 1.33660 1.42927 1.49375 1.66575 2.03914 2.17472 2.52514 2.74414 2.81282 3.14027 3.22914 3.34913 3.51498 3.71927 3.84475 3.93498 4.08168 4.11254 4.12261 4.18626 4.25769 4.37073 4.40546 4.47927 4.48287 4.58935 4.66397 4.73846 4.74823 4.77528 4.82424 4.83583 4.86160 4.97353 5.05024 5.07264 5.09197 5.13393 5.28712 5.35531 5.45613 5.60344 5.61104 5.70284 6.01515 6.17920 6.32097 6.59426 6.96849 7.31740 7.76407 8.74820 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017786 B = 0.002566 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.925341 B =10910.063447 C =11592.037917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.366 6.366 3 C 0.252 3.748 4 C -0.137 4.137 5 C -0.120 4.120 6 C -0.106 4.106 7 C -0.094 4.094 8 C 0.517 3.483 9 O -0.526 6.526 10 N -0.649 5.649 11 C 0.066 3.934 12 C -0.077 4.077 13 C -0.179 4.179 14 C 0.106 3.894 15 O -0.227 6.227 16 C -0.415 4.415 17 H 0.095 0.905 18 C -0.019 4.019 19 N -0.918 5.918 20 Si 1.015 2.985 21 H -0.258 1.258 22 H -0.267 1.267 23 H -0.261 1.261 24 C -0.230 4.230 25 C -0.077 4.077 26 C -0.136 4.136 27 C 0.040 3.960 28 O -0.392 6.392 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.052 0.948 36 H 0.122 0.878 37 H 0.085 0.915 38 H 0.423 0.577 39 H 0.169 0.831 40 H 0.129 0.871 41 H 0.274 0.726 42 H 0.113 0.887 43 H 0.122 0.878 44 H 0.096 0.904 45 H 0.131 0.869 46 H 0.037 0.963 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.816 28.843 -1.855 30.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.286 6.286 3 C 0.174 3.826 4 C -0.175 4.175 5 C -0.157 4.157 6 C -0.143 4.143 7 C -0.098 4.098 8 C 0.304 3.696 9 O -0.400 6.400 10 N -0.298 5.298 11 C -0.027 4.027 12 C -0.097 4.097 13 C -0.199 4.199 14 C 0.056 3.944 15 O -0.134 6.134 16 C -0.492 4.492 17 H 0.113 0.887 18 C -0.217 4.217 19 N -0.556 5.556 20 Si 0.834 3.166 21 H -0.182 1.182 22 H -0.192 1.192 23 H -0.186 1.186 24 C -0.250 4.250 25 C -0.097 4.097 26 C -0.173 4.173 27 C -0.036 4.036 28 O -0.313 6.313 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.070 0.930 36 H 0.140 0.860 37 H 0.103 0.897 38 H 0.262 0.738 39 H 0.186 0.814 40 H 0.147 0.853 41 H 0.083 0.917 42 H 0.131 0.869 43 H 0.139 0.861 44 H 0.115 0.885 45 H 0.149 0.851 46 H 0.055 0.945 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.177 27.896 -1.677 29.741 hybrid contribution -0.337 -1.168 -0.198 1.232 sum -10.514 26.727 -1.875 28.782 Atomic orbital electron populations 1.22791 0.81515 1.02544 1.00591 1.88574 1.19861 1.26245 1.93931 1.23933 0.90455 0.81153 0.87046 1.22924 0.99860 1.01425 0.93279 1.22566 0.92893 1.02839 0.97431 1.22627 0.98670 1.01292 0.91735 1.22541 0.93613 0.92169 1.01475 1.20602 0.81846 0.91169 0.75966 1.90797 1.56482 1.45610 1.47104 1.43113 1.07123 1.06115 1.73419 1.17372 0.97456 0.84980 1.02910 1.20786 0.95710 0.95748 0.97421 1.20333 1.02481 0.91165 1.05932 1.19932 0.93205 0.85966 0.95336 1.83929 1.53901 1.13681 1.61862 1.21717 1.09878 0.89452 1.28121 0.88740 1.26506 0.97181 0.99275 0.98704 1.70165 1.22652 1.20906 1.41843 0.84709 0.77870 0.75952 0.78082 1.18227 1.19152 1.18596 1.21083 0.99033 0.97778 1.07090 1.20899 0.99259 0.91523 0.98009 1.23462 0.98673 1.03056 0.92099 1.23732 0.85547 1.02022 0.92327 1.88904 1.45724 1.69673 1.27004 0.90148 0.93811 0.92652 0.90666 0.87743 0.87491 0.92958 0.86023 0.89683 0.73807 0.81375 0.85279 0.91739 0.86882 0.86059 0.88535 0.85089 0.94459 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 10.60 113.37 1.20 1.73 16 2 O -0.37 -11.08 7.35 -117.86 -0.87 -11.95 16 3 C 0.25 5.58 1.15 31.64 0.04 5.61 16 4 C -0.14 -2.20 6.11 31.78 0.19 -2.01 16 5 C -0.12 -1.58 6.93 31.98 0.22 -1.35 16 6 C -0.11 -1.16 5.91 31.60 0.19 -0.97 16 7 C -0.09 -1.71 0.72 -51.42 -0.04 -1.74 16 8 C 0.52 14.06 6.36 87.66 0.56 14.62 16 9 O -0.53 -20.03 11.24 20.74 0.23 -19.80 16 10 N -0.65 -15.47 4.96 -303.37 -1.50 -16.97 16 11 C 0.07 2.22 6.30 38.17 0.24 2.46 16 12 C -0.08 -2.44 9.96 22.38 0.22 -2.21 16 13 C -0.18 -7.43 9.98 22.37 0.22 -7.21 16 14 C 0.11 5.44 6.65 22.59 0.15 5.59 16 15 O -0.23 -13.94 9.75 -22.82 -0.22 -14.17 16 16 C -0.42 -25.09 9.48 67.92 0.64 -24.44 16 17 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 18 C -0.02 -1.10 5.49 84.83 0.47 -0.63 16 19 N -0.92 -56.99 13.67 21.61 0.30 -56.69 16 20 Si 1.01 44.35 29.55 68.60 2.03 46.38 16 21 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 24 C -0.23 -11.07 9.16 22.37 0.20 -10.87 16 25 C -0.08 -3.18 8.69 22.38 0.19 -2.98 16 26 C -0.14 -1.61 6.28 31.82 0.20 -1.41 16 27 C 0.04 0.66 7.72 72.66 0.56 1.22 16 28 O -0.39 -8.38 10.29 -126.51 -1.30 -9.69 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.04 1.01 7.72 -2.39 -0.02 0.99 16 31 H 0.06 1.09 6.28 -2.38 -0.01 1.07 16 32 H 0.07 1.28 6.11 -2.39 -0.01 1.26 16 33 H 0.10 1.31 7.99 -2.39 -0.02 1.29 16 34 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.12 0.52 7.22 -2.38 -0.02 0.50 16 37 H 0.08 0.88 7.52 -2.39 -0.02 0.86 16 38 H 0.42 6.11 8.57 -92.71 -0.79 5.31 16 39 H 0.17 3.56 8.06 -2.91 -0.02 3.54 16 40 H 0.13 5.07 8.06 -2.91 -0.02 5.05 16 41 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.11 5.66 5.63 -2.91 -0.02 5.65 16 43 H 0.12 5.13 6.23 -2.91 -0.02 5.11 16 44 H 0.10 1.04 7.76 -2.39 -0.02 1.02 16 45 H 0.13 0.62 7.23 -2.39 -0.02 0.61 16 46 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -84.22 374.22 4.35 -79.87 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.22 Total: 27.62 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 5.47 Total: -24.61 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -1.21 Total: -73.66 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -2.16 Total: -55.59 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -84.22 4.35 -79.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434653770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.622 kcal (2) G-P(sol) polarization free energy of solvation -84.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds