Wall clock time and date at job start Wed Apr 1 2020 05:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 114.00304 * 2 1 4 4 C 1.52998 * 109.47256 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.87261 * 59.56324 * 4 3 2 6 6 O 1.20832 * 120.00022 * 265.69930 * 5 4 3 7 7 O 1.34225 * 120.00486 * 85.70151 * 5 4 3 8 8 C 1.54330 * 109.88132 * 298.54498 * 4 3 2 9 9 C 1.55157 * 102.94059 * 262.77436 * 8 4 3 10 10 C 1.54907 * 101.58287 * 324.49963 * 9 8 4 11 11 N 1.47015 * 109.88138 * 180.73788 * 4 3 2 12 12 C 1.34780 * 125.64758 * 300.42902 * 11 4 3 13 13 O 1.21269 * 120.00238 * 0.02562 * 12 11 4 14 14 C 1.50707 * 119.99605 * 180.02562 * 12 11 4 15 15 H 1.08998 * 109.47135 * 300.00160 * 14 12 11 16 16 C 1.50697 * 109.47056 * 60.00344 * 14 12 11 17 17 H 1.07992 * 120.00181 * 29.70773 * 16 14 12 18 18 C 1.37878 * 119.99600 * 209.70599 * 16 14 12 19 19 N 1.31509 * 120.00308 * 6.12211 * 18 16 14 20 20 Si 1.86804 * 119.99805 * 186.11962 * 18 16 14 21 21 H 1.48495 * 109.47048 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46995 * 119.99803 * 20 18 16 23 23 H 1.48501 * 109.47075 * 240.00017 * 20 18 16 24 24 C 1.50700 * 109.46752 * 180.02562 * 14 12 11 25 25 C 1.38241 * 119.99768 * 293.66802 * 24 14 12 26 26 C 1.38234 * 119.99599 * 179.74836 * 25 24 14 27 27 C 1.38229 * 120.00175 * 0.52169 * 26 25 24 28 28 C 1.38233 * 120.00200 * 359.75327 * 27 26 25 29 29 C 1.38230 * 120.00149 * 113.94281 * 24 14 12 30 30 H 1.09002 * 109.46887 * 59.99623 * 1 2 3 31 31 H 1.08999 * 109.47423 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46867 * 300.00636 * 1 2 3 33 33 H 1.09001 * 109.46755 * 300.00293 * 3 2 1 34 34 H 1.08998 * 109.46993 * 59.99739 * 3 2 1 35 35 H 0.96697 * 117.00304 * 179.97438 * 7 5 4 36 36 H 1.09001 * 110.71748 * 21.14059 * 8 4 3 37 37 H 1.09000 * 110.71300 * 144.40860 * 8 4 3 38 38 H 1.09000 * 111.00005 * 82.57802 * 9 8 4 39 39 H 1.09000 * 110.99840 * 206.38429 * 9 8 4 40 40 H 1.09001 * 110.36762 * 155.84959 * 10 9 8 41 41 H 1.09002 * 110.36599 * 278.06294 * 10 9 8 42 42 H 0.97005 * 120.00239 * 180.02562 * 19 18 16 43 43 H 1.08000 * 119.99723 * 359.97438 * 25 24 14 44 44 H 1.08001 * 119.99560 * 180.29916 * 26 25 24 45 45 H 1.08003 * 120.00312 * 179.76927 * 27 26 25 46 46 H 1.07996 * 120.00293 * 179.97438 * 28 27 26 47 47 H 1.07997 * 120.00029 * 0.02562 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9900 0.4282 -1.2209 6 8 4.1755 -0.7641 -1.1589 7 8 4.1887 1.0790 -2.3780 8 6 4.0034 0.4521 1.2759 9 6 4.3933 1.6176 2.2229 10 6 4.9817 2.6458 1.2248 11 7 4.1431 2.5232 0.0185 12 6 3.9640 3.4796 -0.9142 13 8 3.2488 3.2678 -1.8703 14 6 4.6525 4.8123 -0.7686 15 1 4.3337 5.2865 0.1596 16 6 6.1450 4.6061 -0.7406 17 1 6.5852 3.7740 -1.2697 18 6 6.9486 5.4801 -0.0395 19 7 6.4064 6.4210 0.7023 20 14 8.8075 5.3276 -0.1431 21 1 9.1622 4.1961 -1.0369 22 1 9.3778 6.5862 -0.6868 23 1 9.3601 5.0788 1.2127 24 6 4.2887 5.6955 -1.9342 25 6 4.7092 5.3656 -3.2091 26 6 4.3710 6.1730 -4.2790 27 6 3.6216 7.3160 -4.0726 28 6 3.2060 7.6490 -2.7969 29 6 3.5394 6.8386 -1.7278 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 1.6887 1.8464 0.8900 35 1 4.4804 0.5513 -3.1339 36 1 3.1911 -0.1364 1.7026 37 1 4.8672 -0.1779 1.0636 38 1 3.5155 2.0212 2.7276 39 1 5.1449 1.2992 2.9453 40 1 4.9130 3.6538 1.6338 41 1 6.0185 2.4005 0.9945 42 1 6.9717 7.0361 1.1953 43 1 5.2987 4.4750 -3.3697 44 1 4.6954 5.9126 -5.2756 45 1 3.3606 7.9488 -4.9079 46 1 2.6208 8.5422 -2.6356 47 1 3.2150 7.0990 -0.7311 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571131788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:22 Heat of formation + Delta-G solvation = -135.562956 kcal Electronic energy + Delta-G solvation = -32835.072812 eV Core-core repulsion = 28562.221736 eV Total energy + Delta-G solvation = -4272.851077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.76919 -39.02264 -38.22182 -37.52645 -36.52503 -35.57287 -33.74468 -31.32977 -30.96814 -30.66069 -29.94987 -27.36967 -26.78863 -24.95119 -24.31535 -23.50848 -22.08269 -21.60007 -21.04917 -19.70028 -18.66079 -17.41179 -17.09297 -16.54655 -16.40411 -16.21860 -15.85208 -15.62567 -15.19684 -14.71993 -14.58786 -14.27419 -14.21048 -13.82547 -13.51236 -13.38185 -13.17338 -12.69395 -12.51951 -12.37407 -12.30368 -12.15489 -12.01953 -11.67182 -11.58989 -11.42021 -11.28845 -11.10525 -10.99543 -10.98376 -10.85301 -10.54451 -10.38406 -10.29253 -10.27551 -10.01285 -9.63956 -9.45493 -8.77216 -8.60829 -8.14586 -7.95668 -7.63763 -6.30544 -4.34195 2.34685 2.37809 2.52137 3.16300 3.21485 3.26781 3.28672 3.34696 3.68424 4.08455 4.26678 4.52961 4.81209 4.83517 4.97204 5.07241 5.24605 5.28756 5.33242 5.40104 5.56028 5.59517 5.67711 5.70543 5.74619 5.77807 5.85772 5.92974 6.05716 6.12676 6.13523 6.20954 6.34898 6.47524 6.53522 6.57714 6.79618 6.84741 6.89389 6.96727 7.08664 7.15045 7.35652 7.43209 7.61215 7.73562 7.93361 8.02944 8.20884 8.32247 8.67907 9.12981 9.30306 10.78051 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009949 B = 0.005026 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.814997 B = 5569.156071 C = 6986.496295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.387 6.387 3 C 0.059 3.941 4 C 0.183 3.817 5 C 0.487 3.513 6 O -0.521 6.521 7 O -0.480 6.480 8 C -0.108 4.108 9 C -0.140 4.140 10 C 0.117 3.883 11 N -0.604 5.604 12 C 0.545 3.455 13 O -0.534 6.534 14 C 0.059 3.941 15 H 0.088 0.912 16 C -0.508 4.508 17 H 0.062 0.938 18 C 0.077 3.923 19 N -0.878 5.878 20 Si 0.891 3.109 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.281 1.281 24 C -0.012 4.012 25 C -0.081 4.081 26 C -0.135 4.135 27 C -0.148 4.148 28 C -0.133 4.133 29 C -0.118 4.118 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.395 0.605 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.266 0.734 43 H 0.112 0.888 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.886 -6.234 1.818 9.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.305 6.305 3 C -0.019 4.019 4 C 0.095 3.905 5 C 0.328 3.672 6 O -0.409 6.409 7 O -0.287 6.287 8 C -0.146 4.146 9 C -0.178 4.178 10 C -0.006 4.006 11 N -0.342 5.342 12 C 0.337 3.663 13 O -0.409 6.409 14 C 0.038 3.962 15 H 0.106 0.894 16 C -0.546 4.546 17 H 0.080 0.920 18 C -0.127 4.127 19 N -0.514 5.514 20 Si 0.719 3.281 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.013 4.013 25 C -0.099 4.099 26 C -0.153 4.153 27 C -0.166 4.166 28 C -0.151 4.151 29 C -0.136 4.136 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.252 0.748 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.130 0.870 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.207 -6.349 1.696 9.753 hybrid contribution 1.141 -0.021 -0.598 1.289 sum -6.066 -6.370 1.098 8.864 Atomic orbital electron populations 1.22727 0.80817 1.02592 1.00131 1.87887 1.19817 1.27227 1.95537 1.22813 0.91005 0.85211 1.02863 1.20548 0.93005 0.85407 0.91560 1.23609 0.72714 0.86048 0.84870 1.90653 1.48407 1.16437 1.85406 1.84905 1.78842 1.44766 1.20209 1.22597 1.02825 0.97347 0.91809 1.22975 1.01655 0.95541 0.97642 1.22291 0.94521 1.00591 0.83170 1.48565 1.48628 1.11090 1.25888 1.21538 0.79384 0.85745 0.79640 1.90604 1.39166 1.80835 1.30340 1.18077 0.96383 0.86578 0.95197 0.89411 1.20642 0.88563 1.12742 1.32644 0.91998 1.24888 0.98900 0.94902 0.94052 1.69883 1.35641 1.17722 1.28154 0.86531 0.85144 0.78426 0.78039 1.19545 1.20730 1.20739 1.20021 0.91822 0.94642 0.94834 1.20836 0.98258 0.98598 0.92191 1.20954 1.00233 0.95902 0.98245 1.20796 1.01341 0.97992 0.96462 1.20888 1.01522 0.99479 0.93207 1.20974 0.98990 0.95573 0.98065 0.93995 0.89606 0.94008 0.90522 0.91575 0.74830 0.88871 0.89654 0.90706 0.89537 0.88647 0.90748 0.92396 0.86970 0.87668 0.87793 0.87634 0.87086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.39 -5.81 9.58 -35.23 -0.34 -6.15 16 3 C 0.06 0.92 4.77 37.16 0.18 1.10 16 4 C 0.18 3.06 0.62 -132.00 -0.08 2.98 16 5 C 0.49 8.93 6.76 36.00 0.24 9.17 16 6 O -0.52 -10.12 16.72 -18.76 -0.31 -10.43 16 7 O -0.48 -8.66 10.31 -46.81 -0.48 -9.14 16 8 C -0.11 -1.51 5.56 -24.89 -0.14 -1.65 16 9 C -0.14 -1.74 7.08 -24.58 -0.17 -1.92 16 10 C 0.12 1.91 5.59 -2.53 -0.01 1.89 16 11 N -0.60 -11.02 2.80 -157.07 -0.44 -11.46 16 12 C 0.54 11.51 6.25 -10.98 -0.07 11.44 16 13 O -0.53 -12.04 12.05 -17.22 -0.21 -12.25 16 14 C 0.06 1.32 1.74 -94.07 -0.16 1.16 16 15 H 0.09 2.09 6.83 -51.93 -0.35 1.74 16 16 C -0.51 -12.07 6.14 -34.44 -0.21 -12.28 16 17 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 18 C 0.08 1.87 5.45 -17.82 -0.10 1.77 16 19 N -0.88 -21.96 12.84 55.43 0.71 -21.25 16 20 Si 0.89 19.41 29.54 -169.99 -5.02 14.38 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 C -0.01 -0.27 4.30 -104.62 -0.45 -0.72 16 25 C -0.08 -1.76 8.32 -39.58 -0.33 -2.09 16 26 C -0.14 -2.61 10.05 -39.59 -0.40 -3.01 16 27 C -0.15 -2.69 10.05 -39.59 -0.40 -3.09 16 28 C -0.13 -2.50 10.05 -39.58 -0.40 -2.90 16 29 C -0.12 -2.49 9.67 -39.58 -0.38 -2.87 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.08 1.37 6.72 -51.93 -0.35 1.02 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.40 5.30 9.10 45.56 0.41 5.71 16 36 H 0.09 1.21 7.30 -51.93 -0.38 0.83 16 37 H 0.08 1.24 7.40 -51.93 -0.38 0.85 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.10 1.68 7.44 -51.93 -0.39 1.30 16 41 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 42 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 43 H 0.11 2.50 7.88 -52.49 -0.41 2.09 16 44 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 45 H 0.10 1.58 8.06 -52.48 -0.42 1.15 16 46 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 47 H 0.11 2.26 7.95 -52.49 -0.42 1.84 16 LS Contribution 386.42 15.07 5.82 5.82 Total: -1.00 -29.99 386.42 -8.08 -38.07 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -6.04 Total: 11.91 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -1.77 Total: 0.48 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.27 Total: -32.71 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -1.34 Total: -37.96 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.99 -8.08 -38.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571131788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.495 kcal (2) G-P(sol) polarization free energy of solvation -29.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds