Wall clock time and date at job start Wed Apr 1 2020 05:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 114.00304 * 2 1 4 4 C 1.52998 * 109.47256 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.87261 * 59.56324 * 4 3 2 6 6 O 1.20832 * 120.00022 * 265.69930 * 5 4 3 7 7 O 1.34225 * 120.00486 * 85.70151 * 5 4 3 8 8 C 1.54330 * 109.88132 * 298.54498 * 4 3 2 9 9 C 1.55157 * 102.94059 * 262.77436 * 8 4 3 10 10 C 1.54907 * 101.58287 * 324.49963 * 9 8 4 11 11 N 1.47015 * 109.88138 * 180.73788 * 4 3 2 12 12 C 1.34780 * 125.64758 * 300.42902 * 11 4 3 13 13 O 1.21269 * 120.00238 * 0.02562 * 12 11 4 14 14 C 1.50707 * 119.99605 * 180.02562 * 12 11 4 15 15 H 1.08998 * 109.47135 * 300.00160 * 14 12 11 16 16 C 1.50697 * 109.47056 * 60.00344 * 14 12 11 17 17 H 1.07992 * 120.00181 * 29.70773 * 16 14 12 18 18 C 1.37878 * 119.99600 * 209.70599 * 16 14 12 19 19 N 1.31509 * 120.00308 * 6.12211 * 18 16 14 20 20 Si 1.86804 * 119.99805 * 186.11962 * 18 16 14 21 21 H 1.48495 * 109.47048 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46995 * 119.99803 * 20 18 16 23 23 H 1.48501 * 109.47075 * 240.00017 * 20 18 16 24 24 C 1.50700 * 109.46752 * 180.02562 * 14 12 11 25 25 C 1.38241 * 119.99768 * 293.66802 * 24 14 12 26 26 C 1.38234 * 119.99599 * 179.74836 * 25 24 14 27 27 C 1.38229 * 120.00175 * 0.52169 * 26 25 24 28 28 C 1.38233 * 120.00200 * 359.75327 * 27 26 25 29 29 C 1.38230 * 120.00149 * 113.94281 * 24 14 12 30 30 H 1.09002 * 109.46887 * 59.99623 * 1 2 3 31 31 H 1.08999 * 109.47423 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46867 * 300.00636 * 1 2 3 33 33 H 1.09001 * 109.46755 * 300.00293 * 3 2 1 34 34 H 1.08998 * 109.46993 * 59.99739 * 3 2 1 35 35 H 0.96697 * 117.00304 * 179.97438 * 7 5 4 36 36 H 1.09001 * 110.71748 * 21.14059 * 8 4 3 37 37 H 1.09000 * 110.71300 * 144.40860 * 8 4 3 38 38 H 1.09000 * 111.00005 * 82.57802 * 9 8 4 39 39 H 1.09000 * 110.99840 * 206.38429 * 9 8 4 40 40 H 1.09001 * 110.36762 * 155.84959 * 10 9 8 41 41 H 1.09002 * 110.36599 * 278.06294 * 10 9 8 42 42 H 0.97005 * 120.00239 * 180.02562 * 19 18 16 43 43 H 1.08000 * 119.99723 * 359.97438 * 25 24 14 44 44 H 1.08001 * 119.99560 * 180.29916 * 26 25 24 45 45 H 1.08003 * 120.00312 * 179.76927 * 27 26 25 46 46 H 1.07996 * 120.00293 * 179.97438 * 28 27 26 47 47 H 1.07997 * 120.00029 * 0.02562 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9900 0.4282 -1.2209 6 8 4.1755 -0.7641 -1.1589 7 8 4.1887 1.0790 -2.3780 8 6 4.0034 0.4521 1.2759 9 6 4.3933 1.6176 2.2229 10 6 4.9817 2.6458 1.2248 11 7 4.1431 2.5232 0.0185 12 6 3.9640 3.4796 -0.9142 13 8 3.2488 3.2678 -1.8703 14 6 4.6525 4.8123 -0.7686 15 1 4.3337 5.2865 0.1596 16 6 6.1450 4.6061 -0.7406 17 1 6.5852 3.7740 -1.2697 18 6 6.9486 5.4801 -0.0395 19 7 6.4064 6.4210 0.7023 20 14 8.8075 5.3276 -0.1431 21 1 9.1622 4.1961 -1.0369 22 1 9.3778 6.5862 -0.6868 23 1 9.3601 5.0788 1.2127 24 6 4.2887 5.6955 -1.9342 25 6 4.7092 5.3656 -3.2091 26 6 4.3710 6.1730 -4.2790 27 6 3.6216 7.3160 -4.0726 28 6 3.2060 7.6490 -2.7969 29 6 3.5394 6.8386 -1.7278 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 1.6887 1.8464 0.8900 35 1 4.4804 0.5513 -3.1339 36 1 3.1911 -0.1364 1.7026 37 1 4.8672 -0.1779 1.0636 38 1 3.5155 2.0212 2.7276 39 1 5.1449 1.2992 2.9453 40 1 4.9130 3.6538 1.6338 41 1 6.0185 2.4005 0.9945 42 1 6.9717 7.0361 1.1953 43 1 5.2987 4.4750 -3.3697 44 1 4.6954 5.9126 -5.2756 45 1 3.3606 7.9488 -4.9079 46 1 2.6208 8.5422 -2.6356 47 1 3.2150 7.0990 -0.7311 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571131788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:21 Heat of formation + Delta-G solvation = -152.550074 kcal Electronic energy + Delta-G solvation = -32835.809429 eV Core-core repulsion = 28562.221736 eV Total energy + Delta-G solvation = -4273.587693 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.17300 -40.58437 -39.65289 -38.82300 -37.90535 -37.04465 -35.52116 -32.98624 -32.35574 -31.95867 -31.50758 -28.99328 -27.84976 -26.24219 -25.84620 -25.03835 -23.46688 -23.16208 -22.45833 -21.11065 -20.13092 -18.88148 -18.77290 -18.04028 -17.87614 -17.41542 -17.36115 -16.87121 -16.68263 -16.18364 -16.07609 -15.75010 -15.71367 -15.21791 -14.98961 -14.89935 -14.43617 -14.08754 -14.03542 -13.84779 -13.64427 -13.46014 -13.42516 -13.26370 -13.07040 -12.84488 -12.70323 -12.66011 -12.49259 -12.31531 -12.13591 -12.11235 -11.88382 -11.72222 -11.62183 -11.59160 -11.22856 -10.79241 -10.61638 -10.30261 -9.63236 -9.52579 -9.24003 -8.17547 -6.24763 0.78003 0.81434 1.07151 1.40412 1.46385 1.53815 1.83791 1.94250 2.19130 2.45670 2.84537 3.11753 3.27566 3.33166 3.64244 3.79766 4.13629 4.17995 4.24309 4.28912 4.32017 4.34897 4.39924 4.48418 4.49472 4.51529 4.57345 4.58153 4.78569 4.85464 4.90050 4.95065 4.98481 5.00830 5.10667 5.18048 5.33574 5.36530 5.44917 5.47886 5.56136 5.69275 5.81117 5.85944 5.98402 6.00264 6.26989 6.42367 6.65100 6.78007 6.96337 7.39937 7.50576 8.90836 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009949 B = 0.005026 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.814997 B = 5569.156071 C = 6986.496295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.069 3.931 4 C 0.174 3.826 5 C 0.483 3.517 6 O -0.535 6.535 7 O -0.494 6.494 8 C -0.101 4.101 9 C -0.121 4.121 10 C 0.112 3.888 11 N -0.602 5.602 12 C 0.544 3.456 13 O -0.553 6.553 14 C 0.064 3.936 15 H 0.068 0.932 16 C -0.503 4.503 17 H 0.044 0.956 18 C 0.046 3.954 19 N -0.900 5.900 20 Si 0.939 3.061 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.271 1.271 24 C -0.038 4.038 25 C -0.105 4.105 26 C -0.137 4.137 27 C -0.143 4.143 28 C -0.130 4.130 29 C -0.139 4.139 30 H 0.038 0.962 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.411 0.589 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.267 0.733 43 H 0.094 0.906 44 H 0.132 0.868 45 H 0.144 0.856 46 H 0.138 0.862 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.580 -6.218 2.140 10.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C -0.009 4.009 4 C 0.086 3.914 5 C 0.325 3.675 6 O -0.425 6.425 7 O -0.304 6.304 8 C -0.138 4.138 9 C -0.159 4.159 10 C -0.010 4.010 11 N -0.339 5.339 12 C 0.336 3.664 13 O -0.431 6.431 14 C 0.043 3.957 15 H 0.086 0.914 16 C -0.541 4.541 17 H 0.063 0.937 18 C -0.157 4.157 19 N -0.537 5.537 20 Si 0.765 3.235 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.196 1.196 24 C -0.039 4.039 25 C -0.123 4.123 26 C -0.155 4.155 27 C -0.161 4.161 28 C -0.148 4.148 29 C -0.158 4.158 30 H 0.057 0.943 31 H 0.124 0.876 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.270 0.730 36 H 0.128 0.872 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.133 0.867 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.150 0.850 45 H 0.162 0.838 46 H 0.156 0.844 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.897 -6.357 2.031 10.339 hybrid contribution 1.289 -0.038 -0.797 1.516 sum -6.609 -6.394 1.235 9.278 Atomic orbital electron populations 1.22984 0.78771 1.04245 1.00951 1.87861 1.22043 1.26524 1.95631 1.22610 0.90211 0.85662 1.02376 1.20881 0.93864 0.84422 0.92208 1.23976 0.72269 0.86031 0.85272 1.90631 1.49173 1.16948 1.85720 1.84893 1.78817 1.45641 1.21057 1.22624 1.03108 0.97527 0.90575 1.22956 1.02903 0.93290 0.96711 1.22360 0.94055 1.01104 0.83518 1.48483 1.48440 1.11333 1.25671 1.21236 0.79247 0.85973 0.79992 1.90575 1.39966 1.81301 1.31214 1.17924 0.95725 0.87505 0.94583 0.91418 1.20566 0.89456 1.12044 1.32004 0.93749 1.25347 1.01589 0.94778 0.93960 1.69959 1.36484 1.18344 1.28886 0.85803 0.81791 0.77680 0.78228 1.20012 1.21315 1.19614 1.20121 0.93272 0.95454 0.95082 1.20827 0.99434 0.99019 0.93026 1.21298 0.99713 0.95775 0.98688 1.21248 0.99799 0.97633 0.97427 1.21283 1.00874 0.99866 0.92795 1.21125 0.99736 0.95908 0.98982 0.94294 0.87573 0.92069 0.93244 0.89782 0.73033 0.87168 0.90198 0.88873 0.86663 0.90323 0.92029 0.92396 0.88777 0.85005 0.83819 0.84383 0.87389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.78 16 2 O -0.40 -11.58 9.58 -148.98 -1.43 -13.00 16 3 C 0.07 2.14 4.77 71.98 0.34 2.49 16 4 C 0.17 5.78 0.62 3.21 0.00 5.78 16 5 C 0.48 17.90 6.76 71.23 0.48 18.39 16 6 O -0.54 -20.77 16.72 21.95 0.37 -20.40 16 7 O -0.49 -18.42 10.31 -44.14 -0.46 -18.88 16 8 C -0.10 -2.64 5.56 31.79 0.18 -2.46 16 9 C -0.12 -2.76 7.08 31.99 0.23 -2.53 16 10 C 0.11 3.68 5.59 86.85 0.49 4.16 16 11 N -0.60 -22.47 2.80 -769.23 -2.16 -24.62 16 12 C 0.54 23.89 6.25 87.66 0.55 24.44 16 13 O -0.55 -25.92 12.05 18.80 0.23 -25.69 16 14 C 0.06 3.00 1.74 -13.03 -0.02 2.97 16 15 H 0.07 3.41 6.83 -2.39 -0.02 3.39 16 16 C -0.50 -24.78 6.14 25.60 0.16 -24.63 16 17 H 0.04 2.30 7.82 -2.91 -0.02 2.28 16 18 C 0.05 2.25 5.45 84.66 0.46 2.71 16 19 N -0.90 -45.93 12.84 21.45 0.28 -45.65 16 20 Si 0.94 40.29 29.54 68.60 2.03 42.32 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 22 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 C -0.04 -1.78 4.30 -19.87 -0.09 -1.86 16 25 C -0.10 -4.67 8.32 22.27 0.19 -4.49 16 26 C -0.14 -5.12 10.05 22.27 0.22 -4.89 16 27 C -0.14 -4.83 10.05 22.27 0.22 -4.61 16 28 C -0.13 -4.67 10.05 22.27 0.22 -4.45 16 29 C -0.14 -5.94 9.67 22.27 0.22 -5.72 16 30 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.05 1.80 6.72 -2.39 -0.02 1.78 16 34 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.41 11.44 9.10 -74.06 -0.67 10.77 16 36 H 0.11 2.56 7.30 -2.39 -0.02 2.55 16 37 H 0.08 2.21 7.40 -2.39 -0.02 2.19 16 38 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.08 2.86 7.44 -2.39 -0.02 2.84 16 41 H 0.06 2.16 8.03 -2.39 -0.02 2.14 16 42 H 0.27 13.05 8.31 -92.70 -0.77 12.28 16 43 H 0.09 4.41 7.88 -2.91 -0.02 4.39 16 44 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 45 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 46 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 47 H 0.11 4.52 7.95 -2.91 -0.02 4.50 16 Total: -1.00 -66.19 386.42 4.27 -61.92 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: 0.32 Total: 36.93 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 5.09 Total: 7.08 kcal Atomic # 7 Polarization: -68.39 SS G_CDS: -1.88 Total: -70.27 kcal Atomic # 8 Polarization: -76.68 SS G_CDS: -1.29 Total: -77.97 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -66.19 4.27 -61.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571131788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.626 kcal (2) G-P(sol) polarization free energy of solvation -66.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds