Wall clock time and date at job start Wed Apr 1 2020 04:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 116.99805 * 2 1 4 4 C 1.38734 * 120.05631 * 359.72692 * 3 2 1 5 5 C 1.38146 * 119.94535 * 179.76612 * 4 3 2 6 6 C 1.38271 * 120.05197 * 0.51186 * 5 4 3 7 7 C 1.50703 * 119.93909 * 179.72148 * 6 5 4 8 8 C 1.50701 * 112.84487 * 111.80624 * 7 6 5 9 9 O 1.21293 * 119.99758 * 118.24007 * 8 7 6 10 10 N 1.34774 * 120.00186 * 298.23183 * 8 7 6 11 11 C 1.37090 * 120.00282 * 4.72435 * 10 8 7 12 12 H 1.08007 * 120.00066 * 317.31148 * 11 10 8 13 13 C 1.38945 * 120.00325 * 137.30883 * 11 10 8 14 14 N 1.31419 * 120.00269 * 162.76057 * 13 11 10 15 15 Si 1.86799 * 120.00250 * 342.76787 * 13 11 10 16 16 H 1.48498 * 109.47394 * 95.06345 * 15 13 11 17 17 H 1.48494 * 109.47306 * 215.06961 * 15 13 11 18 18 H 1.48502 * 109.46921 * 335.06568 * 15 13 11 19 19 C 1.46508 * 119.99978 * 184.72215 * 10 8 7 20 20 C 1.53002 * 109.46694 * 84.32119 * 19 10 8 21 21 C 1.50704 * 109.46486 * 179.97438 * 20 19 10 22 22 O 1.20820 * 120.00359 * 0.02562 * 21 20 19 23 23 O 1.34231 * 119.99836 * 180.02562 * 21 20 19 24 24 C 1.53776 * 113.61744 * 340.50052 * 7 6 5 25 25 C 1.53776 * 87.08049 * 220.01768 * 24 7 6 26 26 C 1.53783 * 113.61204 * 242.99857 * 7 6 5 27 27 C 1.38259 * 120.11275 * 359.73542 * 6 5 4 28 28 C 1.38145 * 120.05549 * 0.02562 * 27 6 5 29 29 H 1.09002 * 109.47248 * 299.99733 * 1 2 3 30 30 H 1.09001 * 109.47216 * 59.99601 * 1 2 3 31 31 H 1.09003 * 109.46865 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.02774 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.97081 * 180.24775 * 5 4 3 34 34 H 0.96993 * 120.00537 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.46619 * 204.32215 * 19 10 8 36 36 H 1.08992 * 109.47040 * 324.32293 * 19 10 8 37 37 H 1.08991 * 109.47157 * 299.99901 * 20 19 10 38 38 H 1.08997 * 109.46892 * 60.00612 * 20 19 10 39 39 H 0.96698 * 117.00053 * 180.02562 * 23 21 20 40 40 H 1.09000 * 113.61751 * 334.56521 * 24 7 6 41 41 H 1.09002 * 113.61823 * 105.46858 * 24 7 6 42 42 H 1.09002 * 113.61687 * 270.88387 * 25 24 7 43 43 H 1.09003 * 113.69107 * 139.98947 * 25 24 7 44 44 H 1.09003 * 113.61188 * 254.52998 * 26 7 6 45 45 H 1.09001 * 113.61165 * 25.35626 * 26 7 6 46 46 H 1.07999 * 119.97090 * 179.97438 * 27 6 5 47 47 H 1.08000 * 120.02340 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2915 2.3751 -0.0057 5 6 1.9209 3.6048 -0.0008 6 6 3.3018 3.6759 -0.0009 7 6 3.9859 5.0187 -0.0019 8 6 4.7112 5.3068 1.2873 9 8 5.9127 5.4730 1.2831 10 7 4.0248 5.3799 2.4449 11 6 2.6836 5.0971 2.4656 12 1 2.0408 5.4705 1.6820 13 6 2.1510 4.3301 3.4945 14 7 0.8555 4.3348 3.7149 15 14 3.2766 3.2923 4.5648 16 1 3.6304 4.0503 5.7917 17 1 2.5808 2.0360 4.9424 18 1 4.5136 2.9655 3.8109 19 6 4.7121 5.7616 3.6811 20 6 4.7789 7.2871 3.7773 21 6 5.4853 7.6797 5.0493 22 8 5.8939 6.8269 5.8014 23 8 5.6607 8.9768 5.3467 24 6 3.0821 6.1702 -0.4730 25 6 4.3067 6.7199 -1.2231 26 6 4.8355 5.2763 -1.2576 27 6 4.0560 2.5171 -0.0004 28 6 3.4312 1.2850 -0.0003 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2129 2.3202 -0.0106 33 1 1.3340 4.5114 -0.0012 34 1 0.4837 3.7991 4.4329 35 1 4.1652 5.3671 4.5375 36 1 5.7227 5.3533 3.6759 37 1 5.3257 7.6815 2.9210 38 1 3.7683 7.6954 3.7826 39 1 6.1198 9.1795 6.1733 40 1 2.2744 5.8501 -1.1313 41 1 2.7395 6.8155 0.3359 42 1 4.9186 7.3949 -0.6246 43 1 4.0723 7.1227 -2.2085 44 1 5.9085 5.2000 -1.0819 45 1 4.5080 4.7106 -2.1299 46 1 5.1344 2.5752 -0.0009 47 1 4.0209 0.3801 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599536218.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:26 Heat of formation + Delta-G solvation = -103.631164 kcal Electronic energy + Delta-G solvation = -32432.975580 eV Core-core repulsion = 28161.509170 eV Total energy + Delta-G solvation = -4271.466410 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.56766 -39.95854 -39.26420 -37.42254 -36.31748 -35.90792 -35.00475 -32.28811 -31.00545 -30.55053 -29.87745 -27.27285 -25.68156 -25.44211 -24.96795 -23.82500 -21.92083 -21.20121 -20.88945 -20.15893 -18.39161 -17.93554 -17.75371 -16.86867 -16.50414 -16.21296 -15.77080 -15.53751 -15.39587 -15.28945 -14.88867 -14.54324 -14.09546 -13.79730 -13.61748 -13.29700 -13.14231 -12.98853 -12.76578 -12.55915 -12.30818 -12.28978 -12.01872 -11.86190 -11.73352 -11.61589 -11.34185 -11.25788 -11.14122 -10.87092 -10.65843 -10.46905 -10.37002 -10.33725 -10.09767 -9.96271 -9.82863 -9.69213 -9.25313 -8.73515 -8.34763 -7.90121 -7.41601 -6.48825 -4.15741 1.96217 2.03505 2.47698 3.11137 3.19055 3.26669 3.36346 3.60478 3.64444 4.13990 4.27027 4.37784 4.91441 5.06862 5.13554 5.20957 5.24314 5.28482 5.33089 5.36594 5.42553 5.48178 5.56041 5.64429 5.68212 5.75830 5.96607 6.00152 6.00877 6.06923 6.10166 6.11492 6.25544 6.30281 6.36527 6.48699 6.51895 6.61408 6.64781 6.69995 6.75642 6.86516 6.99495 7.27283 7.30721 7.31801 7.84611 8.01303 8.11547 8.19394 8.90702 9.26249 9.57375 10.59779 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011700 B = 0.004733 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.521717 B = 5913.980678 C = 7258.329219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.325 6.325 3 C 0.112 3.888 4 C -0.202 4.202 5 C -0.032 4.032 6 C -0.068 4.068 7 C -0.035 4.035 8 C 0.513 3.487 9 O -0.588 6.588 10 N -0.459 5.459 11 C -0.342 4.342 12 H 0.114 0.886 13 C 0.080 3.920 14 N -0.858 5.858 15 Si 0.859 3.141 16 H -0.272 1.272 17 H -0.288 1.288 18 H -0.259 1.259 19 C 0.114 3.886 20 C -0.122 4.122 21 C 0.484 3.516 22 O -0.519 6.519 23 O -0.520 6.520 24 C -0.122 4.122 25 C -0.141 4.141 26 C -0.118 4.118 27 C -0.079 4.079 28 C -0.159 4.159 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.274 0.726 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.404 0.596 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.120 0.880 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.078 1.503 -6.804 6.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.239 6.239 3 C 0.068 3.932 4 C -0.220 4.220 5 C -0.050 4.050 6 C -0.069 4.069 7 C -0.038 4.038 8 C 0.302 3.698 9 O -0.472 6.472 10 N -0.179 5.179 11 C -0.469 4.469 12 H 0.131 0.869 13 C -0.128 4.128 14 N -0.493 5.493 15 Si 0.686 3.314 16 H -0.198 1.198 17 H -0.215 1.215 18 H -0.183 1.183 19 C -0.009 4.009 20 C -0.161 4.161 21 C 0.326 3.674 22 O -0.407 6.407 23 O -0.332 6.332 24 C -0.159 4.159 25 C -0.178 4.178 26 C -0.156 4.156 27 C -0.097 4.097 28 C -0.178 4.178 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.261 0.739 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.138 0.862 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.315 0.986 -6.832 6.910 hybrid contribution 0.276 -0.444 1.636 1.718 sum 0.591 0.542 -5.195 5.257 Atomic orbital electron populations 1.22961 0.79066 1.03079 1.01444 1.85992 1.20896 1.27648 1.89377 1.18940 0.92239 0.83838 0.98221 1.21074 0.99473 0.92343 1.09134 1.20703 0.93615 0.96781 0.93871 1.19084 0.93197 0.92927 1.01652 1.20426 0.96766 0.93183 0.93436 1.19757 0.86133 0.78782 0.85089 1.90547 1.14501 1.55156 1.87034 1.43618 1.09574 1.59741 1.04984 1.19156 0.80837 1.33208 1.13674 0.86910 1.25240 0.95282 0.95470 0.96832 1.69679 1.11327 1.38001 1.30245 0.87151 0.82203 0.80766 0.81246 1.19850 1.21457 1.18271 1.21405 0.98965 0.91134 0.89406 1.21770 1.02188 0.99733 0.92432 1.23719 0.76168 0.79495 0.87985 1.90705 1.47727 1.51337 1.50942 1.84577 1.73603 1.29022 1.45987 1.22987 0.96392 0.96625 0.99903 1.22809 0.98016 0.96802 1.00185 1.22868 1.00632 0.96179 0.95902 1.20674 0.99490 0.91162 0.98345 1.20178 0.91212 0.98077 1.08301 0.92559 0.92995 0.88971 0.86126 0.85608 0.91619 0.90336 0.90647 0.87578 0.86803 0.73859 0.89637 0.90304 0.90306 0.91796 0.90274 0.90089 0.86173 0.86191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.33 -5.35 10.50 -19.43 -0.20 -5.56 16 3 C 0.11 2.01 6.69 -39.22 -0.26 1.75 16 4 C -0.20 -3.57 9.04 -39.43 -0.36 -3.92 16 5 C -0.03 -0.58 7.32 -39.60 -0.29 -0.87 16 6 C -0.07 -1.27 3.86 -104.60 -0.40 -1.68 16 7 C -0.04 -0.64 0.45 -156.00 -0.07 -0.71 16 8 C 0.51 11.09 6.26 -10.99 -0.07 11.02 16 9 O -0.59 -13.74 15.55 5.55 0.09 -13.66 16 10 N -0.46 -10.28 2.11 -114.81 -0.24 -10.52 16 11 C -0.34 -8.03 6.95 -14.94 -0.10 -8.14 16 12 H 0.11 2.66 4.53 -52.48 -0.24 2.42 16 13 C 0.08 2.00 5.32 -17.47 -0.09 1.91 16 14 N -0.86 -22.24 13.96 55.50 0.77 -21.47 16 15 Si 0.86 21.08 24.96 -169.99 -4.24 16.84 16 16 H -0.27 -6.67 6.76 56.52 0.38 -6.29 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.26 -6.59 7.11 56.52 0.40 -6.19 16 19 C 0.11 2.50 3.23 -4.04 -0.01 2.48 16 20 C -0.12 -2.19 6.09 -27.88 -0.17 -2.36 16 21 C 0.48 8.26 8.33 36.01 0.30 8.56 16 22 O -0.52 -10.47 16.74 -18.75 -0.31 -10.78 16 23 O -0.52 -6.84 13.42 -39.26 -0.53 -7.37 16 24 C -0.12 -1.92 5.29 -25.92 -0.14 -2.06 16 25 C -0.14 -2.04 7.80 -25.92 -0.20 -2.24 16 26 C -0.12 -1.86 6.92 -25.92 -0.18 -2.04 16 27 C -0.08 -1.46 9.45 -39.61 -0.37 -1.84 16 28 C -0.16 -2.86 9.99 -39.43 -0.39 -3.25 16 29 H 0.06 0.72 7.67 -51.93 -0.40 0.33 16 30 H 0.05 0.56 7.65 -51.93 -0.40 0.17 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.12 1.90 6.30 -52.49 -0.33 1.57 16 33 H 0.13 2.24 5.78 -52.49 -0.30 1.93 16 34 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.08 1.84 3.85 -51.93 -0.20 1.64 16 36 H 0.08 1.73 7.49 -51.93 -0.39 1.34 16 37 H 0.11 1.82 8.14 -51.93 -0.42 1.39 16 38 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 39 H 0.40 3.39 9.10 45.56 0.41 3.81 16 40 H 0.09 1.21 6.93 -51.93 -0.36 0.85 16 41 H 0.08 1.34 7.12 -51.93 -0.37 0.97 16 42 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.34 7.34 -51.93 -0.38 0.96 16 45 H 0.08 1.14 8.09 -51.93 -0.42 0.72 16 46 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 47 H 0.12 1.94 8.06 -52.49 -0.42 1.51 16 LS Contribution 377.99 15.07 5.70 5.70 Total: -1.00 -30.78 377.99 -6.29 -37.06 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -5.49 Total: 11.79 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -1.83 Total: -2.03 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.53 Total: -31.99 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -0.96 Total: -37.37 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.24 Total: 16.84 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.78 -6.29 -37.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599536218.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.570 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds