Wall clock time and date at job start Wed Apr 1 2020 04:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 116.99805 * 2 1 4 4 C 1.38734 * 120.05631 * 359.72692 * 3 2 1 5 5 C 1.38146 * 119.94535 * 179.76612 * 4 3 2 6 6 C 1.38271 * 120.05197 * 0.51186 * 5 4 3 7 7 C 1.50703 * 119.93909 * 179.72148 * 6 5 4 8 8 C 1.50701 * 112.84487 * 111.80624 * 7 6 5 9 9 O 1.21293 * 119.99758 * 118.24007 * 8 7 6 10 10 N 1.34774 * 120.00186 * 298.23183 * 8 7 6 11 11 C 1.37090 * 120.00282 * 4.72435 * 10 8 7 12 12 H 1.08007 * 120.00066 * 317.31148 * 11 10 8 13 13 C 1.38945 * 120.00325 * 137.30883 * 11 10 8 14 14 N 1.31419 * 120.00269 * 162.76057 * 13 11 10 15 15 Si 1.86799 * 120.00250 * 342.76787 * 13 11 10 16 16 H 1.48498 * 109.47394 * 95.06345 * 15 13 11 17 17 H 1.48494 * 109.47306 * 215.06961 * 15 13 11 18 18 H 1.48502 * 109.46921 * 335.06568 * 15 13 11 19 19 C 1.46508 * 119.99978 * 184.72215 * 10 8 7 20 20 C 1.53002 * 109.46694 * 84.32119 * 19 10 8 21 21 C 1.50704 * 109.46486 * 179.97438 * 20 19 10 22 22 O 1.20820 * 120.00359 * 0.02562 * 21 20 19 23 23 O 1.34231 * 119.99836 * 180.02562 * 21 20 19 24 24 C 1.53776 * 113.61744 * 340.50052 * 7 6 5 25 25 C 1.53776 * 87.08049 * 220.01768 * 24 7 6 26 26 C 1.53783 * 113.61204 * 242.99857 * 7 6 5 27 27 C 1.38259 * 120.11275 * 359.73542 * 6 5 4 28 28 C 1.38145 * 120.05549 * 0.02562 * 27 6 5 29 29 H 1.09002 * 109.47248 * 299.99733 * 1 2 3 30 30 H 1.09001 * 109.47216 * 59.99601 * 1 2 3 31 31 H 1.09003 * 109.46865 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.02774 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.97081 * 180.24775 * 5 4 3 34 34 H 0.96993 * 120.00537 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.46619 * 204.32215 * 19 10 8 36 36 H 1.08992 * 109.47040 * 324.32293 * 19 10 8 37 37 H 1.08991 * 109.47157 * 299.99901 * 20 19 10 38 38 H 1.08997 * 109.46892 * 60.00612 * 20 19 10 39 39 H 0.96698 * 117.00053 * 180.02562 * 23 21 20 40 40 H 1.09000 * 113.61751 * 334.56521 * 24 7 6 41 41 H 1.09002 * 113.61823 * 105.46858 * 24 7 6 42 42 H 1.09002 * 113.61687 * 270.88387 * 25 24 7 43 43 H 1.09003 * 113.69107 * 139.98947 * 25 24 7 44 44 H 1.09003 * 113.61188 * 254.52998 * 26 7 6 45 45 H 1.09001 * 113.61165 * 25.35626 * 26 7 6 46 46 H 1.07999 * 119.97090 * 179.97438 * 27 6 5 47 47 H 1.08000 * 120.02340 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2915 2.3751 -0.0057 5 6 1.9209 3.6048 -0.0008 6 6 3.3018 3.6759 -0.0009 7 6 3.9859 5.0187 -0.0019 8 6 4.7112 5.3068 1.2873 9 8 5.9127 5.4730 1.2831 10 7 4.0248 5.3799 2.4449 11 6 2.6836 5.0971 2.4656 12 1 2.0408 5.4705 1.6820 13 6 2.1510 4.3301 3.4945 14 7 0.8555 4.3348 3.7149 15 14 3.2766 3.2923 4.5648 16 1 3.6304 4.0503 5.7917 17 1 2.5808 2.0360 4.9424 18 1 4.5136 2.9655 3.8109 19 6 4.7121 5.7616 3.6811 20 6 4.7789 7.2871 3.7773 21 6 5.4853 7.6797 5.0493 22 8 5.8939 6.8269 5.8014 23 8 5.6607 8.9768 5.3467 24 6 3.0821 6.1702 -0.4730 25 6 4.3067 6.7199 -1.2231 26 6 4.8355 5.2763 -1.2576 27 6 4.0560 2.5171 -0.0004 28 6 3.4312 1.2850 -0.0003 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2129 2.3202 -0.0106 33 1 1.3340 4.5114 -0.0012 34 1 0.4837 3.7991 4.4329 35 1 4.1652 5.3671 4.5375 36 1 5.7227 5.3533 3.6759 37 1 5.3257 7.6815 2.9210 38 1 3.7683 7.6954 3.7826 39 1 6.1198 9.1795 6.1733 40 1 2.2744 5.8501 -1.1313 41 1 2.7395 6.8155 0.3359 42 1 4.9186 7.3949 -0.6246 43 1 4.0723 7.1227 -2.2085 44 1 5.9085 5.2000 -1.0819 45 1 4.5080 4.7106 -2.1299 46 1 5.1344 2.5752 -0.0009 47 1 4.0209 0.3801 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599536218.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:25 Heat of formation + Delta-G solvation = -122.334660 kcal Electronic energy + Delta-G solvation = -32433.786625 eV Core-core repulsion = 28161.509170 eV Total energy + Delta-G solvation = -4272.277455 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.05768 -41.31411 -40.61674 -38.92791 -37.68629 -37.20270 -36.73775 -34.13773 -32.61184 -31.93633 -31.23739 -28.39620 -27.18594 -26.92784 -26.54903 -25.28224 -23.28371 -22.60571 -22.21258 -21.69726 -20.10211 -19.28532 -19.05200 -18.43877 -17.96679 -17.83495 -17.12747 -16.86595 -16.79832 -16.60481 -16.53871 -16.03787 -15.55572 -15.35704 -15.24305 -14.67072 -14.56767 -14.45615 -14.29740 -14.20752 -13.86238 -13.63598 -13.53485 -13.31766 -13.03858 -12.94740 -12.80975 -12.71730 -12.62485 -12.50993 -12.09030 -11.92299 -11.86579 -11.74968 -11.71684 -11.60796 -11.14243 -11.11564 -11.00627 -10.46739 -9.77438 -9.70996 -8.83416 -8.45112 -6.07315 0.55199 0.62725 1.11125 1.12644 1.24366 1.35046 1.78012 1.98384 2.17099 2.46185 2.70608 2.91867 3.04297 3.73041 3.79426 3.83714 3.87293 3.93176 3.99611 4.08158 4.15207 4.24185 4.31973 4.39909 4.42330 4.53709 4.57348 4.63114 4.65286 4.72133 4.76608 4.84253 4.87958 4.92522 4.97099 5.17170 5.19687 5.26383 5.35569 5.41781 5.46554 5.52261 5.56116 5.64624 5.87188 5.94236 6.16990 6.30211 6.55372 6.92990 7.02442 7.43456 7.77505 8.65961 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011700 B = 0.004733 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.521717 B = 5913.980678 C = 7258.329219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.337 6.337 3 C 0.106 3.894 4 C -0.206 4.206 5 C -0.039 4.039 6 C -0.079 4.079 7 C -0.048 4.048 8 C 0.512 3.488 9 O -0.609 6.609 10 N -0.471 5.471 11 C -0.314 4.314 12 H 0.118 0.882 13 C 0.059 3.941 14 N -0.880 5.880 15 Si 0.882 3.118 16 H -0.277 1.277 17 H -0.293 1.293 18 H -0.279 1.279 19 C 0.112 3.888 20 C -0.115 4.115 21 C 0.495 3.505 22 O -0.555 6.555 23 O -0.503 6.503 24 C -0.114 4.114 25 C -0.129 4.129 26 C -0.111 4.111 27 C -0.091 4.091 28 C -0.170 4.170 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.122 0.878 32 H 0.139 0.861 33 H 0.131 0.869 34 H 0.273 0.727 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.428 0.572 40 H 0.106 0.894 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.096 0.904 44 H 0.062 0.938 45 H 0.102 0.898 46 H 0.117 0.883 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.922 2.493 -8.262 8.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.251 6.251 3 C 0.062 3.938 4 C -0.225 4.225 5 C -0.057 4.057 6 C -0.079 4.079 7 C -0.051 4.051 8 C 0.302 3.698 9 O -0.494 6.494 10 N -0.191 5.191 11 C -0.442 4.442 12 H 0.135 0.865 13 C -0.146 4.146 14 N -0.517 5.517 15 Si 0.711 3.289 16 H -0.204 1.204 17 H -0.220 1.220 18 H -0.205 1.205 19 C -0.011 4.011 20 C -0.153 4.153 21 C 0.339 3.661 22 O -0.447 6.447 23 O -0.317 6.317 24 C -0.152 4.152 25 C -0.166 4.166 26 C -0.149 4.149 27 C -0.110 4.110 28 C -0.189 4.189 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.140 0.860 32 H 0.156 0.844 33 H 0.149 0.851 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.134 0.866 38 H 0.143 0.857 39 H 0.290 0.710 40 H 0.125 0.875 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.114 0.886 44 H 0.081 0.919 45 H 0.120 0.880 46 H 0.135 0.865 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.525 2.005 -8.277 8.532 hybrid contribution 0.609 -0.770 2.078 2.298 sum 0.084 1.235 -6.199 6.321 Atomic orbital electron populations 1.23272 0.76889 1.05283 1.01877 1.85981 1.23143 1.26913 1.89113 1.19080 0.92404 0.84588 0.97756 1.21316 1.00496 0.92081 1.08564 1.20815 0.93500 0.97287 0.94067 1.19185 0.93521 0.93029 1.02210 1.20544 0.98095 0.93964 0.92503 1.20370 0.86062 0.77483 0.85871 1.90527 1.15585 1.55758 1.87521 1.43755 1.09356 1.60482 1.05487 1.19159 0.81151 1.31230 1.12629 0.86502 1.25400 0.95281 0.96330 0.97570 1.69678 1.11442 1.39408 1.31158 0.86845 0.80919 0.80373 0.80750 1.20351 1.21994 1.20464 1.21288 0.97360 0.93862 0.88609 1.21573 1.03295 0.96871 0.93602 1.23380 0.75350 0.80258 0.87158 1.90706 1.49351 1.52649 1.51979 1.84498 1.73351 1.26299 1.47538 1.23002 0.97119 0.95163 0.99910 1.22744 0.96608 0.95769 1.01453 1.22886 0.99291 0.97460 0.95275 1.20781 0.99537 0.91702 0.98940 1.20395 0.91828 0.98396 1.08233 0.93282 0.91305 0.86033 0.84378 0.85080 0.91631 0.92161 0.92605 0.86572 0.85655 0.70997 0.87540 0.91538 0.91472 0.88565 0.91888 0.87988 0.86458 0.85017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.59 16 2 O -0.34 -10.63 10.50 -92.44 -0.97 -11.60 16 3 C 0.11 3.72 6.69 22.51 0.15 3.87 16 4 C -0.21 -7.00 9.04 22.37 0.20 -6.80 16 5 C -0.04 -1.37 7.32 22.26 0.16 -1.20 16 6 C -0.08 -2.89 3.86 -19.85 -0.08 -2.96 16 7 C -0.05 -1.71 0.45 -53.15 -0.02 -1.73 16 8 C 0.51 22.03 6.26 87.66 0.55 22.57 16 9 O -0.61 -28.62 15.55 -3.07 -0.05 -28.67 16 10 N -0.47 -21.07 2.11 -635.53 -1.34 -22.41 16 11 C -0.31 -14.63 6.95 84.04 0.58 -14.05 16 12 H 0.12 5.38 4.53 -2.91 -0.01 5.37 16 13 C 0.06 2.98 5.32 84.92 0.45 3.43 16 14 N -0.88 -45.35 13.96 21.66 0.30 -45.05 16 15 Si 0.88 43.98 24.96 68.60 1.71 45.69 16 16 H -0.28 -13.85 6.76 99.48 0.67 -13.17 16 17 H -0.29 -14.65 7.11 99.48 0.71 -13.95 16 18 H -0.28 -14.71 7.11 99.48 0.71 -14.00 16 19 C 0.11 4.96 3.23 86.38 0.28 5.24 16 20 C -0.11 -4.03 6.09 29.85 0.18 -3.85 16 21 C 0.49 16.37 8.33 71.24 0.59 16.96 16 22 O -0.56 -22.36 16.74 21.98 0.37 -21.99 16 23 O -0.50 -12.00 13.42 -51.42 -0.69 -12.69 16 24 C -0.11 -3.36 5.29 31.12 0.16 -3.20 16 25 C -0.13 -3.38 7.80 31.12 0.24 -3.13 16 26 C -0.11 -3.32 6.92 31.12 0.22 -3.10 16 27 C -0.09 -3.39 9.45 22.25 0.21 -3.18 16 28 C -0.17 -6.05 9.99 22.36 0.22 -5.83 16 29 H 0.05 1.18 7.67 -2.39 -0.02 1.16 16 30 H 0.07 1.32 7.65 -2.39 -0.02 1.30 16 31 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.14 4.09 6.30 -2.91 -0.02 4.08 16 33 H 0.13 4.42 5.78 -2.91 -0.02 4.40 16 34 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 35 H 0.06 2.88 3.85 -2.39 -0.01 2.87 16 36 H 0.06 2.64 7.49 -2.39 -0.02 2.63 16 37 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 38 H 0.13 4.12 8.14 -2.39 -0.02 4.10 16 39 H 0.43 5.99 9.10 -74.06 -0.67 5.32 16 40 H 0.11 2.69 6.93 -2.39 -0.02 2.67 16 41 H 0.07 2.13 7.12 -2.39 -0.02 2.11 16 42 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.06 2.08 7.34 -2.39 -0.02 2.06 16 45 H 0.10 2.60 8.09 -2.39 -0.02 2.58 16 46 H 0.12 4.30 8.06 -2.91 -0.02 4.27 16 47 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -66.40 377.99 4.87 -61.53 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: 0.32 Total: 30.56 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 5.22 Total: 4.63 kcal Atomic # 7 Polarization: -66.43 SS G_CDS: -1.04 Total: -67.47 kcal Atomic # 8 Polarization: -73.61 SS G_CDS: -1.34 Total: -74.95 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.71 Total: 45.69 kcal Total: -66.40 4.87 -61.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599536218.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.807 kcal (2) G-P(sol) polarization free energy of solvation -66.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds