Wall clock time and date at job start Wed Apr 1 2020 05:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99694 * 2 1 4 4 C 1.53000 * 109.47053 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47111 * 65.00020 * 4 3 2 6 6 C 1.46492 * 119.99982 * 270.00101 * 5 4 3 7 7 C 1.50704 * 109.47466 * 269.99921 * 6 5 4 8 8 H 1.08005 * 119.99429 * 0.02562 * 7 6 5 9 9 C 1.37869 * 120.00221 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00089 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00238 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.47113 * 90.00027 * 11 9 7 13 13 H 1.48502 * 109.47239 * 210.00283 * 11 9 7 14 14 H 1.48504 * 109.46960 * 330.00180 * 11 9 7 15 15 C 1.34776 * 119.99529 * 90.00507 * 5 4 3 16 16 O 1.21583 * 119.99968 * 359.97438 * 15 5 4 17 17 N 1.34779 * 119.99718 * 180.02562 * 15 5 4 18 18 C 1.39320 * 119.99690 * 175.12146 * 17 15 5 19 19 C 1.39137 * 119.56608 * 185.07040 * 18 17 15 20 20 C 1.38119 * 119.21905 * 179.74970 * 19 18 17 21 21 C 1.39898 * 118.39597 * 0.51367 * 20 19 18 22 22 C 1.48429 * 120.46577 * 179.77073 * 21 20 19 23 23 N 1.34061 * 126.66800 * 359.66509 * 22 21 20 24 24 N 1.28995 * 107.26391 * 179.89325 * 23 22 21 25 25 N 1.28731 * 108.94532 * 0.37214 * 24 23 22 26 26 H 0.97003 * 125.33786 * 179.72161 * 25 24 23 27 27 N 1.28872 * 109.31905 * 359.76449 * 25 24 23 28 28 C 1.39170 * 119.07980 * 359.75294 * 21 20 19 29 29 N 1.31788 * 120.68419 * 359.97410 * 28 21 20 30 30 H 1.09006 * 109.46981 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47251 * 299.99748 * 1 2 3 32 32 H 1.09004 * 109.47136 * 59.99738 * 1 2 3 33 33 H 1.09000 * 109.46954 * 60.00349 * 3 2 1 34 34 H 1.08999 * 109.47583 * 300.00179 * 3 2 1 35 35 H 1.09005 * 109.46836 * 305.00218 * 4 3 2 36 36 H 1.08996 * 109.47283 * 185.00240 * 4 3 2 37 37 H 1.08993 * 109.47454 * 30.00401 * 6 5 4 38 38 H 1.09002 * 109.46833 * 150.00057 * 6 5 4 39 39 H 0.97000 * 120.00433 * 179.97438 * 10 9 7 40 40 H 0.96999 * 119.99714 * 354.83516 * 17 15 5 41 41 H 1.07998 * 120.39063 * 359.97438 * 19 18 17 42 42 H 1.08002 * 120.80342 * 180.24420 * 20 19 18 43 43 H 1.08003 * 119.65816 * 180.02562 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.1052 -0.8919 -1.3428 7 6 5.5010 -1.2977 -0.9450 8 1 6.2196 -0.5458 -0.6538 9 6 5.8606 -2.6286 -0.9528 10 7 7.0788 -2.9827 -0.6062 11 14 4.6176 -3.9291 -1.4558 12 1 4.7020 -4.1541 -2.9213 13 1 4.9123 -5.1978 -0.7424 14 1 3.2501 -3.4693 -1.1036 15 6 4.2615 1.3340 -2.3218 16 8 4.1535 2.5427 -2.2470 17 7 4.6660 0.7634 -3.4739 18 6 4.8636 1.5481 -4.6080 19 6 5.1780 0.9384 -5.8185 20 6 5.3672 1.7228 -6.9394 21 6 5.2448 3.1103 -6.8089 22 6 5.4437 3.9971 -7.9824 23 7 5.7511 3.6164 -9.2306 24 7 5.8322 4.6854 -9.9478 25 7 5.5976 5.7080 -9.2019 26 1 5.6012 6.6316 -9.4986 27 7 5.3582 5.3124 -7.9990 28 6 4.9335 3.6477 -5.5634 29 7 4.7551 2.8645 -4.5186 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8465 -0.8899 35 1 3.8514 0.5683 0.8410 36 1 3.9784 2.1766 0.0890 37 1 3.3853 -1.3628 -0.6736 38 1 3.9120 -1.2112 -2.3670 39 1 7.3318 -3.9191 -0.6113 40 1 4.8235 -0.1930 -3.5122 41 1 5.2694 -0.1359 -5.8816 42 1 5.6082 1.2762 -7.8928 43 1 4.8363 4.7175 -5.4521 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605096785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:44 Heat of formation + Delta-G solvation = 116.272127 kcal Electronic energy + Delta-G solvation = -29819.201510 eV Core-core repulsion = 25518.315981 eV Total energy + Delta-G solvation = -4300.885529 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.58123 -40.63530 -39.20764 -37.56630 -35.34211 -34.83148 -34.37133 -33.42150 -32.59606 -32.20826 -30.40236 -29.30976 -27.60277 -26.06990 -25.08980 -24.64487 -23.56166 -22.63953 -22.52768 -21.74090 -19.60863 -19.18605 -18.17056 -17.27985 -17.09589 -17.05883 -16.49637 -16.13485 -15.82115 -15.60266 -15.26686 -14.78623 -14.53894 -14.24747 -14.21402 -13.91886 -13.63369 -13.35812 -13.11789 -12.63097 -12.60798 -12.37670 -12.24811 -12.07459 -11.76453 -11.60871 -11.56596 -11.37393 -11.27231 -11.04099 -10.87521 -10.60703 -10.27910 -10.15057 -9.85372 -9.75292 -9.63815 -9.45102 -8.87415 -8.73388 -8.07467 -7.66735 -6.23105 -4.25849 0.61394 1.04073 1.35662 2.07748 2.27315 2.94384 3.15853 3.27029 3.29963 3.57897 3.62951 4.03979 4.05698 4.15241 4.24956 4.25913 4.68384 4.89035 5.04427 5.07730 5.16057 5.22169 5.31534 5.37518 5.40766 5.57596 5.58872 5.65019 5.74580 5.75045 5.90218 6.01524 6.08611 6.21616 6.31756 6.37703 6.40091 6.77775 6.90667 7.09408 7.34297 7.41377 7.50671 7.99363 8.04831 8.27836 8.53991 8.83540 9.14980 9.36354 10.89268 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.002772 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.702854 B =10098.409895 C =11566.261999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.046 3.954 4 C 0.141 3.859 5 N -0.597 5.597 6 C 0.211 3.789 7 C -0.547 4.547 8 H 0.079 0.921 9 C 0.077 3.923 10 N -0.889 5.889 11 Si 0.868 3.132 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.259 1.259 15 C 0.699 3.301 16 O -0.554 6.554 17 N -0.658 5.658 18 C 0.415 3.585 19 C -0.218 4.218 20 C 0.000 4.000 21 C -0.133 4.133 22 C 0.242 3.758 23 N -0.274 5.274 24 N -0.053 5.053 25 N -0.230 5.230 26 H 0.474 0.526 27 N -0.300 5.300 28 C 0.184 3.816 29 N -0.474 5.474 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.016 0.984 39 H 0.267 0.733 40 H 0.426 0.574 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.199 11.844 -11.521 18.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C -0.032 4.032 4 C 0.017 3.983 5 N -0.331 5.331 6 C 0.089 3.911 7 C -0.585 4.585 8 H 0.097 0.903 9 C -0.127 4.127 10 N -0.526 5.526 11 Si 0.694 3.306 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.184 1.184 15 C 0.401 3.599 16 O -0.429 6.429 17 N -0.305 5.305 18 C 0.180 3.820 19 C -0.242 4.242 20 C -0.027 4.027 21 C -0.141 4.141 22 C -0.038 4.038 23 N -0.147 5.147 24 N -0.048 5.048 25 N -0.076 5.076 26 H 0.328 0.672 27 N -0.152 5.152 28 C 0.021 3.979 29 N -0.188 5.188 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.071 0.929 38 H 0.033 0.967 39 H 0.077 0.923 40 H 0.267 0.733 41 H 0.163 0.837 42 H 0.165 0.835 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.164 12.769 -11.066 18.765 hybrid contribution -0.462 -1.063 -0.783 1.399 sum -8.625 11.706 -11.849 18.757 Atomic orbital electron populations 1.22679 0.82136 1.02268 0.99360 1.88007 1.18717 1.27866 1.95269 1.23103 0.95377 0.84702 1.00050 1.21268 0.90700 0.99823 0.86548 1.47069 1.67844 1.08143 1.10041 1.19794 0.98517 0.75910 0.96851 1.21463 0.95928 0.93800 1.47319 0.90335 1.24879 0.95046 0.98293 0.94434 1.69895 1.18133 1.17562 1.47052 0.86970 0.82679 0.81801 0.79171 1.19920 1.20889 1.18369 1.15905 0.78547 0.85262 0.80213 1.90953 1.58175 1.11436 1.82303 1.43127 1.67138 1.12122 1.08150 1.18531 0.89332 0.88424 0.85679 1.21422 1.09397 1.01853 0.91509 1.21254 0.91486 0.91232 0.98775 1.18095 1.13582 0.91959 0.90491 1.23460 0.99655 0.87437 0.93263 1.76081 1.17916 1.18887 1.01831 1.78879 1.14831 0.90007 1.21118 1.47695 1.44096 1.12313 1.03493 0.67193 1.74948 1.22435 1.13963 1.03814 1.22777 0.89601 1.00049 0.85509 1.67918 1.17462 1.03021 1.30360 0.90037 0.94531 0.94617 0.92914 0.93170 0.89108 0.88910 0.92929 0.96653 0.92339 0.73340 0.83663 0.83503 0.81943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.26 9.53 -35.23 -0.34 -6.59 16 3 C 0.05 0.70 6.28 37.16 0.23 0.93 16 4 C 0.14 2.48 5.81 -4.04 -0.02 2.46 16 5 N -0.60 -12.08 2.42 -180.80 -0.44 -12.52 16 6 C 0.21 4.57 3.77 -5.20 -0.02 4.55 16 7 C -0.55 -14.04 9.94 -34.44 -0.34 -14.38 16 8 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 9 C 0.08 2.04 5.47 -17.82 -0.10 1.95 16 10 N -0.89 -25.42 13.96 55.43 0.77 -24.64 16 11 Si 0.87 19.35 27.47 -169.99 -4.67 14.68 16 12 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 15 C 0.70 14.48 8.24 -86.92 -0.72 13.76 16 16 O -0.55 -12.38 14.17 5.29 0.08 -12.30 16 17 N -0.66 -12.17 5.22 -15.80 -0.08 -12.25 16 18 C 0.41 7.01 7.42 -154.72 -1.15 5.86 16 19 C -0.22 -2.91 9.92 -39.29 -0.39 -3.29 16 20 C 0.00 0.00 9.83 -39.00 -0.38 -0.38 16 21 C -0.13 -1.73 5.89 -104.73 -0.62 -2.35 16 22 C 0.24 2.98 7.95 -156.30 -1.24 1.74 16 23 N -0.27 -3.41 12.30 32.15 0.40 -3.01 16 24 N -0.05 -0.55 13.47 60.35 0.81 0.26 16 25 N -0.23 -1.79 7.90 60.35 0.48 -1.32 16 26 H 0.47 1.31 8.96 -340.36 -3.05 -1.74 16 27 N -0.30 -3.19 12.10 32.17 0.39 -2.80 16 28 C 0.18 2.64 10.86 -17.22 -0.19 2.45 16 29 N -0.47 -8.39 7.86 -12.11 -0.10 -8.49 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.61 8.07 -51.93 -0.42 1.19 16 36 H 0.09 1.59 7.42 -51.93 -0.39 1.21 16 37 H 0.05 1.18 6.17 -51.93 -0.32 0.86 16 38 H 0.02 0.32 5.87 -51.93 -0.30 0.02 16 39 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.43 7.52 6.50 -40.82 -0.27 7.26 16 41 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.15 1.48 7.96 -52.49 -0.42 1.06 16 43 H 0.16 2.05 7.89 -52.48 -0.41 1.63 16 LS Contribution 373.52 15.07 5.63 5.63 Total: -1.00 -34.25 373.52 -8.59 -42.84 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -7.70 Total: 5.71 kcal Atomic # 6 Polarization: 18.64 SS G_CDS: -3.82 Total: 14.82 kcal Atomic # 7 Polarization: -67.01 SS G_CDS: 2.23 Total: -64.78 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.26 Total: -18.90 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.67 Total: 14.68 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.25 -8.59 -42.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605096785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.116 kcal (2) G-P(sol) polarization free energy of solvation -34.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds