Wall clock time and date at job start Wed Apr 1 2020 05:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99694 * 2 1 4 4 C 1.53000 * 109.47053 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47111 * 65.00020 * 4 3 2 6 6 C 1.46492 * 119.99982 * 270.00101 * 5 4 3 7 7 C 1.50704 * 109.47466 * 269.99921 * 6 5 4 8 8 H 1.08005 * 119.99429 * 0.02562 * 7 6 5 9 9 C 1.37869 * 120.00221 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00089 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00238 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.47113 * 90.00027 * 11 9 7 13 13 H 1.48502 * 109.47239 * 210.00283 * 11 9 7 14 14 H 1.48504 * 109.46960 * 330.00180 * 11 9 7 15 15 C 1.34776 * 119.99529 * 90.00507 * 5 4 3 16 16 O 1.21583 * 119.99968 * 359.97438 * 15 5 4 17 17 N 1.34779 * 119.99718 * 180.02562 * 15 5 4 18 18 C 1.39320 * 119.99690 * 175.12146 * 17 15 5 19 19 C 1.39137 * 119.56608 * 185.07040 * 18 17 15 20 20 C 1.38119 * 119.21905 * 179.74970 * 19 18 17 21 21 C 1.39898 * 118.39597 * 0.51367 * 20 19 18 22 22 C 1.48429 * 120.46577 * 179.77073 * 21 20 19 23 23 N 1.34061 * 126.66800 * 359.66509 * 22 21 20 24 24 N 1.28995 * 107.26391 * 179.89325 * 23 22 21 25 25 N 1.28731 * 108.94532 * 0.37214 * 24 23 22 26 26 H 0.97003 * 125.33786 * 179.72161 * 25 24 23 27 27 N 1.28872 * 109.31905 * 359.76449 * 25 24 23 28 28 C 1.39170 * 119.07980 * 359.75294 * 21 20 19 29 29 N 1.31788 * 120.68419 * 359.97410 * 28 21 20 30 30 H 1.09006 * 109.46981 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47251 * 299.99748 * 1 2 3 32 32 H 1.09004 * 109.47136 * 59.99738 * 1 2 3 33 33 H 1.09000 * 109.46954 * 60.00349 * 3 2 1 34 34 H 1.08999 * 109.47583 * 300.00179 * 3 2 1 35 35 H 1.09005 * 109.46836 * 305.00218 * 4 3 2 36 36 H 1.08996 * 109.47283 * 185.00240 * 4 3 2 37 37 H 1.08993 * 109.47454 * 30.00401 * 6 5 4 38 38 H 1.09002 * 109.46833 * 150.00057 * 6 5 4 39 39 H 0.97000 * 120.00433 * 179.97438 * 10 9 7 40 40 H 0.96999 * 119.99714 * 354.83516 * 17 15 5 41 41 H 1.07998 * 120.39063 * 359.97438 * 19 18 17 42 42 H 1.08002 * 120.80342 * 180.24420 * 20 19 18 43 43 H 1.08003 * 119.65816 * 180.02562 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.1052 -0.8919 -1.3428 7 6 5.5010 -1.2977 -0.9450 8 1 6.2196 -0.5458 -0.6538 9 6 5.8606 -2.6286 -0.9528 10 7 7.0788 -2.9827 -0.6062 11 14 4.6176 -3.9291 -1.4558 12 1 4.7020 -4.1541 -2.9213 13 1 4.9123 -5.1978 -0.7424 14 1 3.2501 -3.4693 -1.1036 15 6 4.2615 1.3340 -2.3218 16 8 4.1535 2.5427 -2.2470 17 7 4.6660 0.7634 -3.4739 18 6 4.8636 1.5481 -4.6080 19 6 5.1780 0.9384 -5.8185 20 6 5.3672 1.7228 -6.9394 21 6 5.2448 3.1103 -6.8089 22 6 5.4437 3.9971 -7.9824 23 7 5.7511 3.6164 -9.2306 24 7 5.8322 4.6854 -9.9478 25 7 5.5976 5.7080 -9.2019 26 1 5.6012 6.6316 -9.4986 27 7 5.3582 5.3124 -7.9990 28 6 4.9335 3.6477 -5.5634 29 7 4.7551 2.8645 -4.5186 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8465 -0.8899 35 1 3.8514 0.5683 0.8410 36 1 3.9784 2.1766 0.0890 37 1 3.3853 -1.3628 -0.6736 38 1 3.9120 -1.2112 -2.3670 39 1 7.3318 -3.9191 -0.6113 40 1 4.8235 -0.1930 -3.5122 41 1 5.2694 -0.1359 -5.8816 42 1 5.6082 1.2762 -7.8928 43 1 4.8363 4.7175 -5.4521 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605096785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:43 Heat of formation + Delta-G solvation = 91.516774 kcal Electronic energy + Delta-G solvation = -29820.274983 eV Core-core repulsion = 25518.315981 eV Total energy + Delta-G solvation = -4301.959002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.42756 -41.94479 -40.56043 -38.76548 -36.74973 -36.27228 -35.31656 -34.54729 -34.43467 -33.28007 -31.70870 -30.63419 -29.24618 -27.14415 -26.00724 -25.76036 -24.67894 -24.33321 -23.79617 -22.84932 -20.91213 -20.13171 -19.52619 -19.06526 -18.49864 -18.11211 -17.51404 -17.37344 -17.06197 -16.83373 -16.71900 -16.12833 -15.97627 -15.66708 -15.30886 -15.05146 -14.92276 -14.79101 -14.38485 -14.15408 -13.88445 -13.61262 -13.49065 -13.25638 -13.15806 -12.74724 -12.70592 -12.61211 -12.47246 -12.30307 -12.15505 -12.03799 -11.91883 -11.66788 -11.39529 -11.32481 -10.80288 -10.76225 -10.57778 -10.16239 -9.51086 -9.06291 -8.27094 -6.35441 -0.41970 0.17293 0.30848 1.25744 1.42146 1.44235 1.46375 1.56482 1.59619 2.19825 2.37876 2.63926 2.82357 2.91123 2.96603 3.07352 3.15017 3.51719 3.89291 3.91008 4.16870 4.18586 4.20433 4.25605 4.40737 4.46996 4.55684 4.56971 4.61914 4.69030 4.73581 4.85366 4.89955 4.93885 5.03994 5.08587 5.24879 5.44885 5.52759 5.64535 5.76758 5.93073 6.22557 6.30844 6.67820 6.74704 7.11114 7.14690 7.31775 7.62521 8.89012 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.002772 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.702854 B =10098.409895 C =11566.261999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.058 3.942 4 C 0.134 3.866 5 N -0.603 5.603 6 C 0.225 3.775 7 C -0.543 4.543 8 H 0.029 0.971 9 C 0.022 3.978 10 N -0.941 5.941 11 Si 0.938 3.062 12 H -0.254 1.254 13 H -0.288 1.288 14 H -0.243 1.243 15 C 0.695 3.305 16 O -0.578 6.578 17 N -0.661 5.661 18 C 0.382 3.618 19 C -0.204 4.204 20 C 0.006 3.994 21 C -0.119 4.119 22 C 0.227 3.773 23 N -0.291 5.291 24 N -0.055 5.055 25 N -0.200 5.200 26 H 0.494 0.506 27 N -0.299 5.299 28 C 0.173 3.827 29 N -0.510 5.510 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.035 0.965 39 H 0.268 0.732 40 H 0.427 0.573 41 H 0.170 0.830 42 H 0.174 0.826 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.971 11.784 -13.654 20.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C -0.020 4.020 4 C 0.011 3.989 5 N -0.337 5.337 6 C 0.103 3.897 7 C -0.581 4.581 8 H 0.047 0.953 9 C -0.177 4.177 10 N -0.580 5.580 11 Si 0.761 3.239 12 H -0.178 1.178 13 H -0.214 1.214 14 H -0.167 1.167 15 C 0.396 3.604 16 O -0.454 6.454 17 N -0.310 5.310 18 C 0.149 3.851 19 C -0.227 4.227 20 C -0.021 4.021 21 C -0.127 4.127 22 C -0.053 4.053 23 N -0.163 5.163 24 N -0.050 5.050 25 N -0.051 5.051 26 H 0.354 0.646 27 N -0.152 5.152 28 C 0.011 3.989 29 N -0.225 5.225 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.268 0.732 41 H 0.187 0.813 42 H 0.191 0.809 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -9.948 12.763 -13.249 20.914 hybrid contribution 0.166 -0.821 -0.223 0.867 sum -9.782 11.942 -13.472 20.489 Atomic orbital electron populations 1.22881 0.79983 1.03457 1.00575 1.87944 1.21114 1.28225 1.95508 1.22926 0.93327 0.84760 1.00967 1.21408 0.92808 0.99324 0.85407 1.47135 1.68084 1.07598 1.10854 1.19530 0.95686 0.76920 0.97593 1.21548 0.96945 0.92908 1.46723 0.95279 1.25760 0.96926 1.00714 0.94273 1.70057 1.20685 1.18193 1.49103 0.85850 0.80347 0.78004 0.79730 1.17781 1.21409 1.16674 1.16084 0.78441 0.85107 0.80757 1.90918 1.59343 1.12282 1.82872 1.43017 1.67546 1.12234 1.08171 1.18796 0.91600 0.88491 0.86186 1.21649 1.07670 1.03138 0.90283 1.21551 0.90392 0.90816 0.99357 1.18171 1.11629 0.92620 0.90244 1.23320 1.00962 0.87857 0.93181 1.76062 1.18615 1.19839 1.01821 1.78834 1.14997 0.90161 1.20997 1.47760 1.41777 1.13110 1.02416 0.64647 1.74919 1.22010 1.13422 1.04817 1.22903 0.90178 1.00283 0.85537 1.67755 1.18495 1.03975 1.32257 0.88928 0.92561 0.94119 0.89922 0.94113 0.89829 0.89121 0.92911 0.94709 0.92260 0.73226 0.81260 0.80906 0.80944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -12.89 9.53 -148.98 -1.42 -14.31 16 3 C 0.06 1.73 6.28 71.98 0.45 2.19 16 4 C 0.13 4.82 5.81 86.38 0.50 5.32 16 5 N -0.60 -24.86 2.42 -844.21 -2.04 -26.90 16 6 C 0.22 9.74 3.77 85.64 0.32 10.06 16 7 C -0.54 -28.62 9.94 25.60 0.25 -28.37 16 8 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 9 C 0.02 1.20 5.47 84.65 0.46 1.66 16 10 N -0.94 -55.27 13.96 21.44 0.30 -54.97 16 11 Si 0.94 39.31 27.47 68.60 1.88 41.19 16 12 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 13 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 14 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 15 C 0.69 29.48 8.24 179.05 1.47 30.95 16 16 O -0.58 -26.61 14.17 -3.98 -0.06 -26.67 16 17 N -0.66 -24.78 5.22 -322.16 -1.68 -26.46 16 18 C 0.38 12.93 7.42 132.96 0.99 13.91 16 19 C -0.20 -5.15 9.92 22.46 0.22 -4.93 16 20 C 0.01 0.14 9.83 22.64 0.22 0.36 16 21 C -0.12 -2.93 5.89 -19.94 -0.12 -3.05 16 22 C 0.23 5.17 7.95 137.36 1.09 6.26 16 23 N -0.29 -6.61 12.30 -52.20 -0.64 -7.25 16 24 N -0.05 -1.01 13.47 37.02 0.50 -0.51 16 25 N -0.20 -2.61 7.90 37.02 0.29 -2.31 16 26 H 0.49 1.34 8.96 -347.53 -3.12 -1.78 16 27 N -0.30 -5.74 12.10 -52.14 -0.63 -6.37 16 28 C 0.17 4.93 10.86 84.92 0.92 5.85 16 29 N -0.51 -18.35 7.86 -192.23 -1.51 -19.87 16 30 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 3.07 8.07 -2.38 -0.02 3.05 16 36 H 0.09 3.24 7.42 -2.39 -0.02 3.22 16 37 H 0.05 2.32 6.17 -2.39 -0.01 2.30 16 38 H 0.04 1.39 5.87 -2.39 -0.01 1.38 16 39 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 40 H 0.43 15.10 6.50 -92.71 -0.60 14.50 16 41 H 0.17 3.37 8.06 -2.91 -0.02 3.34 16 42 H 0.17 2.97 7.96 -2.91 -0.02 2.95 16 43 H 0.17 4.33 7.89 -2.91 -0.02 4.30 16 Total: -1.00 -76.33 373.52 0.36 -75.97 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: -2.68 Total: 26.37 kcal Atomic # 6 Polarization: 34.03 SS G_CDS: 8.05 Total: 42.08 kcal Atomic # 7 Polarization: -139.22 SS G_CDS: -5.42 Total: -144.64 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -1.48 Total: -40.97 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 1.88 Total: 41.19 kcal Total: -76.33 0.36 -75.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605096785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.486 kcal (2) G-P(sol) polarization free energy of solvation -76.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds