Wall clock time and date at job start Wed Apr 1 2020 04:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34777 * 119.99968 * 2 1 4 4 O 1.21594 * 120.00044 * 184.04918 * 3 2 1 5 5 C 1.47643 * 120.00080 * 4.05385 * 3 2 1 6 6 C 1.40008 * 119.89510 * 149.23131 * 5 3 2 7 7 C 1.36324 * 120.10389 * 180.24986 * 6 5 3 8 8 C 1.40891 * 119.89056 * 359.52690 * 7 6 5 9 9 C 1.41111 * 120.10387 * 180.22781 * 8 7 6 10 10 H 1.07991 * 119.99705 * 206.28155 * 9 8 7 11 11 C 1.40226 * 119.99642 * 26.27859 * 9 8 7 12 12 N 1.30642 * 120.00288 * 16.06441 * 11 9 8 13 13 Si 1.86804 * 119.99738 * 196.06338 * 11 9 8 14 14 H 1.48499 * 109.46726 * 60.00231 * 13 11 9 15 15 H 1.48499 * 109.47222 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47279 * 300.00569 * 13 11 9 17 17 C 1.40886 * 119.79435 * 0.49422 * 8 7 6 18 18 C 1.36323 * 119.89157 * 359.73194 * 17 8 7 19 19 C 1.46499 * 120.00121 * 180.02562 * 2 1 3 20 20 H 1.09002 * 109.47349 * 179.97438 * 19 2 1 21 21 C 1.53003 * 109.47013 * 59.99778 * 19 2 1 22 22 O 1.42897 * 109.47298 * 294.99843 * 21 19 2 23 23 C 1.42898 * 114.00309 * 179.97438 * 22 21 19 24 24 C 1.53786 * 113.61675 * 249.14020 * 23 22 21 25 25 C 1.53957 * 87.01726 * 220.04676 * 24 23 22 26 26 C 1.53778 * 87.11168 * 25.36324 * 25 24 23 27 27 C 1.50696 * 109.47543 * 299.99792 * 19 2 1 28 28 O 1.20829 * 119.99572 * 359.97438 * 27 19 2 29 29 O 1.34222 * 120.00306 * 179.97438 * 27 19 2 30 30 H 1.08999 * 109.47780 * 92.84982 * 1 2 3 31 31 H 1.09007 * 109.46620 * 212.85158 * 1 2 3 32 32 H 1.09005 * 109.47171 * 332.84453 * 1 2 3 33 33 H 1.07999 * 119.95334 * 359.97438 * 6 5 3 34 34 H 1.07997 * 120.05271 * 179.72224 * 7 6 5 35 35 H 0.97001 * 119.99791 * 179.97438 * 12 11 9 36 36 H 1.07993 * 120.05979 * 179.71106 * 17 8 7 37 37 H 1.07992 * 119.94777 * 179.97438 * 18 17 8 38 38 H 1.09004 * 109.46831 * 55.00210 * 21 19 2 39 39 H 1.09007 * 109.47179 * 174.99818 * 21 19 2 40 40 H 1.09003 * 112.84553 * 20.33414 * 23 22 21 41 41 H 1.09002 * 113.60839 * 334.56563 * 24 23 22 42 42 H 1.09000 * 113.61510 * 105.46764 * 24 23 22 43 43 H 1.08999 * 113.53584 * 270.80721 * 25 24 23 44 44 H 1.08997 * 113.66170 * 139.92887 * 25 24 23 45 45 H 1.09009 * 113.61504 * 220.09283 * 26 25 24 46 46 H 1.09000 * 113.69642 * 89.19770 * 26 25 24 47 47 H 0.96696 * 117.00325 * 180.02562 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3525 1.1685 -0.0744 5 6 1.4034 2.4442 0.0904 6 6 1.9959 3.5480 0.7156 7 6 1.3187 4.7277 0.8060 8 6 0.0245 4.8379 0.2601 9 6 -0.6786 6.0583 0.3468 10 1 -1.7585 6.0612 0.3362 11 6 0.0249 7.2672 0.4469 12 7 1.2962 7.3097 0.1491 13 14 -0.8558 8.8168 1.0062 14 1 -1.4067 8.6083 2.3694 15 1 0.1028 9.9507 1.0272 16 1 -1.9637 9.1231 0.0661 17 6 -0.5677 3.7243 -0.3677 18 6 0.1155 2.5474 -0.4491 19 6 2.1974 -1.2687 -0.0006 20 1 3.2691 -1.0695 -0.0009 21 6 1.8278 -2.0705 -1.2502 22 8 0.4464 -2.4316 -1.1931 23 6 -0.0040 -3.1869 -2.3194 24 6 -0.9763 -2.4169 -3.2286 25 6 -1.7687 -3.7305 -3.3583 26 6 -1.1731 -4.1331 -1.9989 27 6 1.8335 -2.0595 1.2295 28 8 1.0436 -1.6093 2.0253 29 8 2.3868 -3.2640 1.4411 30 1 -0.3634 -0.0511 -1.0263 31 1 -0.3633 -0.8634 0.5575 32 1 -0.3634 0.9144 0.4691 33 1 2.9892 3.4635 1.1310 34 1 1.7747 5.5772 1.2924 35 1 1.7827 8.1461 0.2180 36 1 -1.5613 3.8027 -0.7834 37 1 -0.3378 1.6932 -0.9298 38 1 2.0084 -1.4639 -2.1376 39 1 2.4376 -2.9728 -1.2965 40 1 0.8113 -3.6677 -2.8599 41 1 -1.5224 -1.6265 -2.7136 42 1 -0.5275 -2.0825 -4.1639 43 1 -1.4365 -4.3595 -4.1842 44 1 -2.8498 -3.5931 -3.3378 45 1 -0.8828 -5.1824 -1.9429 46 1 -1.7723 -3.8137 -1.1462 47 1 2.1221 -3.7338 2.2437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605981667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:43 Heat of formation + Delta-G solvation = -107.932578 kcal Electronic energy + Delta-G solvation = -31013.512041 eV Core-core repulsion = 26741.859107 eV Total energy + Delta-G solvation = -4271.652933 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.73663 -39.38417 -39.16979 -37.23610 -36.46976 -36.12404 -34.73768 -33.86891 -31.28742 -29.92222 -29.16836 -26.51780 -25.97371 -25.81889 -25.04109 -24.28709 -22.29604 -21.20964 -20.59502 -19.87333 -18.99021 -18.15626 -17.60156 -17.40771 -16.79707 -16.46246 -15.99138 -15.63991 -15.53206 -15.32031 -14.85015 -14.45659 -14.42436 -14.11627 -13.57149 -13.23228 -13.07167 -12.92586 -12.67732 -12.53010 -12.44197 -12.30008 -12.15304 -11.96952 -11.88045 -11.58769 -11.49619 -11.34544 -11.21978 -11.07274 -10.99389 -10.80427 -10.64061 -10.55921 -10.48868 -9.97385 -9.62698 -9.45039 -9.32597 -8.99728 -8.39765 -7.63774 -7.49154 -6.96329 -4.56675 2.22948 2.27221 2.72177 2.95364 2.97641 3.00900 3.04921 3.39732 3.48813 3.75135 3.79938 4.34549 4.37389 4.52750 4.57755 4.62155 4.77077 5.01679 5.05371 5.13010 5.22910 5.44830 5.48355 5.54559 5.55696 5.63016 5.69723 5.72544 5.82502 5.90506 5.98928 6.08083 6.17092 6.28560 6.34394 6.51624 6.74941 6.85105 6.87792 7.02162 7.07026 7.13732 7.47756 7.62047 7.73156 7.87826 7.89790 8.02329 8.11948 8.46050 8.67341 8.78494 8.86136 9.95820 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.002667 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.713972 B =10497.691636 C =11623.151886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.599 5.599 3 C 0.578 3.422 4 O -0.568 6.568 5 C -0.277 4.277 6 C -0.038 4.038 7 C -0.179 4.179 8 C 0.129 3.871 9 C -0.446 4.446 10 H 0.083 0.917 11 C 0.074 3.926 12 N -0.773 5.773 13 Si 0.914 3.086 14 H -0.261 1.261 15 H -0.276 1.276 16 H -0.263 1.263 17 C -0.236 4.236 18 C -0.063 4.063 19 C 0.158 3.842 20 H 0.147 0.853 21 C 0.059 3.941 22 O -0.368 6.368 23 C 0.062 3.938 24 C -0.157 4.157 25 C -0.142 4.142 26 C -0.136 4.136 27 C 0.476 3.524 28 O -0.496 6.496 29 O -0.518 6.518 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.287 0.713 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.090 0.910 47 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.525 -18.968 -3.980 19.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.333 5.333 3 C 0.375 3.625 4 O -0.449 6.449 5 C -0.281 4.281 6 C -0.057 4.057 7 C -0.198 4.198 8 C 0.126 3.874 9 C -0.474 4.474 10 H 0.102 0.898 11 C -0.147 4.147 12 N -0.396 5.396 13 Si 0.737 3.263 14 H -0.185 1.185 15 H -0.201 1.201 16 H -0.187 1.187 17 C -0.255 4.255 18 C -0.082 4.082 19 C 0.051 3.949 20 H 0.164 0.836 21 C -0.018 4.018 22 O -0.287 6.287 23 C 0.005 3.995 24 C -0.195 4.195 25 C -0.179 4.179 26 C -0.173 4.173 27 C 0.315 3.685 28 O -0.382 6.382 29 O -0.330 6.330 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.138 0.862 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.129 0.871 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.109 0.891 47 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -1.915 -18.390 -4.023 18.922 hybrid contribution -0.341 0.313 0.518 0.695 sum -2.256 -18.077 -3.505 18.551 Atomic orbital electron populations 1.22401 0.78472 1.04349 1.00824 1.47473 1.07621 1.03055 1.75165 1.18880 0.86684 0.83470 0.73454 1.90641 1.14487 1.87435 1.52354 1.18710 0.97505 0.92918 1.18959 1.20393 0.97214 0.92018 0.96116 1.20987 0.97153 0.96477 1.05204 1.17782 0.91652 0.92015 0.85931 1.19784 0.95016 0.90418 1.42171 0.89842 1.26085 0.94798 1.01535 0.92322 1.69735 1.09277 1.29274 1.31364 0.86269 0.80029 0.79431 0.80543 1.18528 1.20089 1.18736 1.20697 1.01039 0.94690 1.09084 1.20992 0.92969 0.97032 0.97161 1.20444 1.00920 0.84372 0.89198 0.83611 1.22866 0.83767 0.98287 0.96918 1.88031 1.24635 1.72839 1.43188 1.23748 0.95103 0.92965 0.87726 1.23522 0.98287 0.97729 0.99947 1.22680 1.00360 0.97615 0.97294 1.23184 0.96934 0.98874 0.98319 1.23784 0.77726 0.79388 0.87571 1.90718 1.32295 1.69152 1.46053 1.84501 1.67641 1.32213 1.48620 0.92970 0.91216 0.88675 0.88616 0.86181 0.90193 0.88453 0.87115 0.91151 0.91125 0.89634 0.88925 0.91300 0.90165 0.90744 0.91240 0.89148 0.73416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 6.65 59.84 0.40 1.72 16 2 N -0.60 -10.54 2.53 -176.45 -0.45 -10.99 16 3 C 0.58 12.46 7.44 -12.42 -0.09 12.37 16 4 O -0.57 -13.35 16.05 5.28 0.08 -13.27 16 5 C -0.28 -6.41 5.51 -104.73 -0.58 -6.99 16 6 C -0.04 -0.94 9.52 -39.61 -0.38 -1.32 16 7 C -0.18 -4.62 8.62 -39.27 -0.34 -4.96 16 8 C 0.13 3.32 5.56 -106.80 -0.59 2.73 16 9 C -0.45 -11.20 9.05 -37.75 -0.34 -11.54 16 10 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 11 C 0.07 1.76 5.16 -17.31 -0.09 1.67 16 12 N -0.77 -19.19 10.96 55.56 0.61 -18.58 16 13 Si 0.91 17.65 29.59 -169.99 -5.03 12.62 16 14 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 15 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 16 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 17 C -0.24 -5.49 9.73 -39.27 -0.38 -5.87 16 18 C -0.06 -1.36 7.38 -39.61 -0.29 -1.65 16 19 C 0.16 2.28 3.08 -69.08 -0.21 2.07 16 20 H 0.15 2.14 6.90 -51.93 -0.36 1.78 16 21 C 0.06 0.67 5.46 37.16 0.20 0.88 16 22 O -0.37 -4.27 7.57 -35.23 -0.27 -4.54 16 23 C 0.06 0.57 4.29 -25.92 -0.11 0.46 16 24 C -0.16 -1.39 7.93 -25.82 -0.20 -1.59 16 25 C -0.14 -1.03 8.09 -25.83 -0.21 -1.23 16 26 C -0.14 -1.09 7.91 -25.92 -0.21 -1.30 16 27 C 0.48 6.75 6.90 36.00 0.25 7.00 16 28 O -0.50 -8.63 15.21 -18.75 -0.29 -8.92 16 29 O -0.52 -5.35 13.35 -39.24 -0.52 -5.88 16 30 H 0.05 0.77 7.03 -51.93 -0.37 0.40 16 31 H 0.07 1.13 5.80 -51.92 -0.30 0.83 16 32 H 0.10 1.71 4.82 -51.93 -0.25 1.46 16 33 H 0.10 2.31 7.92 -52.49 -0.42 1.89 16 34 H 0.12 3.17 6.21 -52.49 -0.33 2.84 16 35 H 0.29 6.45 8.29 -40.82 -0.34 6.11 16 36 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 37 H 0.11 2.04 4.61 -52.49 -0.24 1.80 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.09 0.65 7.88 -51.93 -0.41 0.24 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.41 2.53 9.10 45.56 0.41 2.94 16 LS Contribution 384.54 15.07 5.80 5.80 Total: -1.00 -31.12 384.54 -8.85 -39.97 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -5.61 Total: 11.36 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -3.18 Total: -7.58 kcal Atomic # 7 Polarization: -29.73 SS G_CDS: 0.16 Total: -29.57 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.99 Total: -32.60 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.12 -8.85 -39.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605981667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.967 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds