Wall clock time and date at job start Wed Apr 1 2020 04:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34777 * 119.99968 * 2 1 4 4 O 1.21594 * 120.00044 * 184.04918 * 3 2 1 5 5 C 1.47643 * 120.00080 * 4.05385 * 3 2 1 6 6 C 1.40008 * 119.89510 * 149.23131 * 5 3 2 7 7 C 1.36324 * 120.10389 * 180.24986 * 6 5 3 8 8 C 1.40891 * 119.89056 * 359.52690 * 7 6 5 9 9 C 1.41111 * 120.10387 * 180.22781 * 8 7 6 10 10 H 1.07991 * 119.99705 * 206.28155 * 9 8 7 11 11 C 1.40226 * 119.99642 * 26.27859 * 9 8 7 12 12 N 1.30642 * 120.00288 * 16.06441 * 11 9 8 13 13 Si 1.86804 * 119.99738 * 196.06338 * 11 9 8 14 14 H 1.48499 * 109.46726 * 60.00231 * 13 11 9 15 15 H 1.48499 * 109.47222 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47279 * 300.00569 * 13 11 9 17 17 C 1.40886 * 119.79435 * 0.49422 * 8 7 6 18 18 C 1.36323 * 119.89157 * 359.73194 * 17 8 7 19 19 C 1.46499 * 120.00121 * 180.02562 * 2 1 3 20 20 H 1.09002 * 109.47349 * 179.97438 * 19 2 1 21 21 C 1.53003 * 109.47013 * 59.99778 * 19 2 1 22 22 O 1.42897 * 109.47298 * 294.99843 * 21 19 2 23 23 C 1.42898 * 114.00309 * 179.97438 * 22 21 19 24 24 C 1.53786 * 113.61675 * 249.14020 * 23 22 21 25 25 C 1.53957 * 87.01726 * 220.04676 * 24 23 22 26 26 C 1.53778 * 87.11168 * 25.36324 * 25 24 23 27 27 C 1.50696 * 109.47543 * 299.99792 * 19 2 1 28 28 O 1.20829 * 119.99572 * 359.97438 * 27 19 2 29 29 O 1.34222 * 120.00306 * 179.97438 * 27 19 2 30 30 H 1.08999 * 109.47780 * 92.84982 * 1 2 3 31 31 H 1.09007 * 109.46620 * 212.85158 * 1 2 3 32 32 H 1.09005 * 109.47171 * 332.84453 * 1 2 3 33 33 H 1.07999 * 119.95334 * 359.97438 * 6 5 3 34 34 H 1.07997 * 120.05271 * 179.72224 * 7 6 5 35 35 H 0.97001 * 119.99791 * 179.97438 * 12 11 9 36 36 H 1.07993 * 120.05979 * 179.71106 * 17 8 7 37 37 H 1.07992 * 119.94777 * 179.97438 * 18 17 8 38 38 H 1.09004 * 109.46831 * 55.00210 * 21 19 2 39 39 H 1.09007 * 109.47179 * 174.99818 * 21 19 2 40 40 H 1.09003 * 112.84553 * 20.33414 * 23 22 21 41 41 H 1.09002 * 113.60839 * 334.56563 * 24 23 22 42 42 H 1.09000 * 113.61510 * 105.46764 * 24 23 22 43 43 H 1.08999 * 113.53584 * 270.80721 * 25 24 23 44 44 H 1.08997 * 113.66170 * 139.92887 * 25 24 23 45 45 H 1.09009 * 113.61504 * 220.09283 * 26 25 24 46 46 H 1.09000 * 113.69642 * 89.19770 * 26 25 24 47 47 H 0.96696 * 117.00325 * 180.02562 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3525 1.1685 -0.0744 5 6 1.4034 2.4442 0.0904 6 6 1.9959 3.5480 0.7156 7 6 1.3187 4.7277 0.8060 8 6 0.0245 4.8379 0.2601 9 6 -0.6786 6.0583 0.3468 10 1 -1.7585 6.0612 0.3362 11 6 0.0249 7.2672 0.4469 12 7 1.2962 7.3097 0.1491 13 14 -0.8558 8.8168 1.0062 14 1 -1.4067 8.6083 2.3694 15 1 0.1028 9.9507 1.0272 16 1 -1.9637 9.1231 0.0661 17 6 -0.5677 3.7243 -0.3677 18 6 0.1155 2.5474 -0.4491 19 6 2.1974 -1.2687 -0.0006 20 1 3.2691 -1.0695 -0.0009 21 6 1.8278 -2.0705 -1.2502 22 8 0.4464 -2.4316 -1.1931 23 6 -0.0040 -3.1869 -2.3194 24 6 -0.9763 -2.4169 -3.2286 25 6 -1.7687 -3.7305 -3.3583 26 6 -1.1731 -4.1331 -1.9989 27 6 1.8335 -2.0595 1.2295 28 8 1.0436 -1.6093 2.0253 29 8 2.3868 -3.2640 1.4411 30 1 -0.3634 -0.0511 -1.0263 31 1 -0.3633 -0.8634 0.5575 32 1 -0.3634 0.9144 0.4691 33 1 2.9892 3.4635 1.1310 34 1 1.7747 5.5772 1.2924 35 1 1.7827 8.1461 0.2180 36 1 -1.5613 3.8027 -0.7834 37 1 -0.3378 1.6932 -0.9298 38 1 2.0084 -1.4639 -2.1376 39 1 2.4376 -2.9728 -1.2965 40 1 0.8113 -3.6677 -2.8599 41 1 -1.5224 -1.6265 -2.7136 42 1 -0.5275 -2.0825 -4.1639 43 1 -1.4365 -4.3595 -4.1842 44 1 -2.8498 -3.5931 -3.3378 45 1 -0.8828 -5.1824 -1.9429 46 1 -1.7723 -3.8137 -1.1462 47 1 2.1221 -3.7338 2.2437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605981667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:42 Heat of formation + Delta-G solvation = -126.151380 kcal Electronic energy + Delta-G solvation = -31014.302067 eV Core-core repulsion = 26741.859107 eV Total energy + Delta-G solvation = -4272.442960 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.96885 -40.69060 -40.09273 -38.96287 -37.56228 -37.13282 -36.12169 -35.59753 -32.70741 -31.76549 -30.78195 -28.02935 -27.52357 -26.52329 -25.98646 -25.10308 -23.85066 -23.00373 -22.06953 -20.58308 -20.42948 -19.45305 -19.20901 -18.44559 -18.02742 -17.80621 -17.19770 -17.07332 -16.80820 -16.26841 -16.04263 -15.95406 -15.75450 -15.26556 -14.94582 -14.89133 -14.56977 -14.19099 -14.02478 -13.70460 -13.65382 -13.63424 -13.30873 -13.25112 -13.13855 -13.07811 -12.79199 -12.64893 -12.54026 -12.36730 -12.27523 -12.00551 -11.80429 -11.71467 -11.54894 -11.24936 -11.24614 -11.13348 -10.72974 -10.36180 -9.83979 -9.50553 -9.36872 -8.75954 -6.47459 0.46821 1.12413 1.14551 1.37447 1.41750 1.51653 1.54667 2.02404 2.16591 2.25652 2.61246 2.73493 3.59526 3.66430 3.72121 3.76393 3.90022 3.99595 4.05657 4.09481 4.20859 4.29100 4.35354 4.38337 4.48989 4.53724 4.58700 4.72763 4.87209 4.91407 4.96806 5.02068 5.02737 5.08270 5.09803 5.19018 5.26259 5.28145 5.39655 5.44794 5.55976 5.60263 5.77548 5.93853 6.01169 6.20751 6.26658 6.35400 6.56724 6.78593 6.90044 6.92627 7.19459 8.19152 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.002667 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.713972 B =10497.691636 C =11623.151886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.592 5.592 3 C 0.577 3.423 4 O -0.595 6.595 5 C -0.288 4.288 6 C -0.051 4.051 7 C -0.200 4.200 8 C 0.103 3.897 9 C -0.475 4.475 10 H 0.091 0.909 11 C 0.033 3.967 12 N -0.808 5.808 13 Si 0.989 3.011 14 H -0.259 1.259 15 H -0.268 1.268 16 H -0.253 1.253 17 C -0.246 4.246 18 C -0.050 4.050 19 C 0.148 3.852 20 H 0.144 0.856 21 C 0.067 3.933 22 O -0.385 6.385 23 C 0.056 3.944 24 C -0.164 4.164 25 C -0.133 4.133 26 C -0.134 4.134 27 C 0.485 3.515 28 O -0.534 6.534 29 O -0.501 6.501 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.294 0.706 36 H 0.116 0.884 37 H 0.146 0.854 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.573 -20.892 -4.950 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.324 5.324 3 C 0.373 3.627 4 O -0.478 6.478 5 C -0.292 4.292 6 C -0.071 4.071 7 C -0.219 4.219 8 C 0.099 3.901 9 C -0.503 4.503 10 H 0.109 0.891 11 C -0.185 4.185 12 N -0.431 5.431 13 Si 0.809 3.191 14 H -0.183 1.183 15 H -0.193 1.193 16 H -0.177 1.177 17 C -0.266 4.266 18 C -0.068 4.068 19 C 0.042 3.958 20 H 0.161 0.839 21 C -0.010 4.010 22 O -0.305 6.305 23 C -0.001 4.001 24 C -0.202 4.202 25 C -0.170 4.170 26 C -0.172 4.172 27 C 0.326 3.674 28 O -0.424 6.424 29 O -0.314 6.314 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.134 0.866 37 H 0.163 0.837 38 H 0.089 0.911 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.114 0.886 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.095 0.905 47 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -2.971 -20.391 -4.997 21.204 hybrid contribution 0.032 0.703 0.815 1.076 sum -2.939 -19.689 -4.182 20.342 Atomic orbital electron populations 1.22358 0.77601 1.03555 1.01858 1.47357 1.08161 1.03299 1.73585 1.18611 0.86257 0.84157 0.73692 1.90618 1.15399 1.87993 1.53811 1.19008 0.98296 0.93519 1.18412 1.20476 0.97164 0.92611 0.96798 1.20917 0.97990 0.96439 1.06566 1.18137 0.91851 0.93423 0.86646 1.20106 0.95580 0.91107 1.43496 0.89058 1.27003 0.95357 1.04582 0.91552 1.69796 1.10835 1.30591 1.31925 0.85141 0.78904 0.75109 0.79990 1.18272 1.19260 1.17729 1.20960 1.01987 0.94611 1.08999 1.21295 0.92082 0.97531 0.95912 1.20738 1.00408 0.83417 0.91265 0.83918 1.22803 0.84434 0.98974 0.94805 1.88007 1.24577 1.73446 1.44443 1.24008 0.95852 0.93016 0.87225 1.23537 0.98613 0.98092 0.99926 1.22678 1.00326 0.96692 0.97351 1.23164 0.96382 0.99408 0.98242 1.23567 0.76990 0.80067 0.86769 1.90718 1.34188 1.70281 1.47180 1.84433 1.66609 1.30530 1.49856 0.90918 0.90770 0.90460 0.89142 0.87785 0.89467 0.86631 0.83698 0.91102 0.88119 0.87721 0.90491 0.90972 0.88565 0.90584 0.89880 0.90512 0.70916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.74 6.65 127.77 0.85 3.59 16 2 N -0.59 -20.33 2.53 -830.43 -2.11 -22.43 16 3 C 0.58 24.98 7.44 86.73 0.65 25.63 16 4 O -0.59 -28.32 16.05 -4.01 -0.06 -28.39 16 5 C -0.29 -13.59 5.51 -19.93 -0.11 -13.70 16 6 C -0.05 -2.64 9.52 22.25 0.21 -2.43 16 7 C -0.20 -10.83 8.62 22.47 0.19 -10.63 16 8 C 0.10 5.42 5.56 -21.28 -0.12 5.30 16 9 C -0.48 -24.35 9.05 23.46 0.21 -24.14 16 10 H 0.09 4.36 7.90 -2.92 -0.02 4.34 16 11 C 0.03 1.60 5.16 85.35 0.44 2.04 16 12 N -0.81 -41.24 10.96 21.87 0.24 -41.01 16 13 Si 0.99 36.12 29.59 68.60 2.03 38.15 16 14 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 15 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 16 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16 17 C -0.25 -11.53 9.73 22.47 0.22 -11.31 16 18 C -0.05 -2.15 7.38 22.25 0.16 -1.99 16 19 C 0.15 4.04 3.08 44.25 0.14 4.18 16 20 H 0.14 4.04 6.90 -2.39 -0.02 4.02 16 21 C 0.07 1.35 5.46 71.98 0.39 1.74 16 22 O -0.39 -7.97 7.57 -148.98 -1.13 -9.10 16 23 C 0.06 0.86 4.29 31.12 0.13 1.00 16 24 C -0.16 -2.54 7.93 31.18 0.25 -2.30 16 25 C -0.13 -1.58 8.09 31.18 0.25 -1.33 16 26 C -0.13 -1.82 7.91 31.12 0.25 -1.58 16 27 C 0.48 12.92 6.90 71.23 0.49 13.42 16 28 O -0.53 -18.08 15.21 21.95 0.33 -17.74 16 29 O -0.50 -8.94 13.35 -51.34 -0.69 -9.63 16 30 H 0.07 1.98 7.03 -2.39 -0.02 1.97 16 31 H 0.07 2.31 5.80 -2.38 -0.01 2.29 16 32 H 0.08 2.72 4.82 -2.38 -0.01 2.70 16 33 H 0.09 4.63 7.92 -2.91 -0.02 4.60 16 34 H 0.10 5.84 6.21 -2.91 -0.02 5.83 16 35 H 0.29 13.54 8.29 -92.71 -0.77 12.77 16 36 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 37 H 0.15 5.12 4.61 -2.91 -0.01 5.11 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.11 1.21 7.88 -2.39 -0.02 1.19 16 41 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.10 0.85 8.14 -2.39 -0.02 0.84 16 44 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 46 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.43 4.04 9.10 -74.06 -0.67 3.37 16 Total: -1.00 -69.41 384.54 3.57 -65.84 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: 0.34 Total: 36.82 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 4.61 Total: -12.52 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -1.87 Total: -63.44 kcal Atomic # 8 Polarization: -63.31 SS G_CDS: -1.54 Total: -64.85 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.15 kcal Total: -69.41 3.57 -65.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605981667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.310 kcal (2) G-P(sol) polarization free energy of solvation -69.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds