Wall clock time and date at job start Wed Apr 1 2020 05:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34711 * 116.99791 * 2 1 4 4 O 1.21469 * 120.00313 * 359.97438 * 3 2 1 5 5 C 1.47722 * 119.99848 * 179.97438 * 3 2 1 6 6 C 1.39647 * 120.15093 * 0.02562 * 5 3 2 7 7 C 1.37926 * 119.84852 * 179.97438 * 6 5 3 8 8 C 1.38388 * 120.15052 * 359.73889 * 7 6 5 9 9 C 1.38342 * 120.30234 * 0.51677 * 8 7 6 10 10 C 1.50695 * 119.92723 * 179.76409 * 9 8 7 11 11 H 1.08999 * 109.47765 * 199.72215 * 10 9 8 12 12 N 1.46911 * 109.47018 * 319.72264 * 10 9 8 13 13 C 1.46898 * 110.99854 * 205.00048 * 12 10 9 14 14 H 1.09001 * 110.05622 * 326.41047 * 13 12 10 15 15 C 1.53869 * 110.03268 * 87.83327 * 13 12 10 16 16 C 1.54267 * 106.59932 * 119.28147 * 15 13 12 17 17 C 1.54891 * 104.19707 * 23.60970 * 16 15 13 18 18 H 1.09005 * 110.91507 * 80.43868 * 17 16 15 19 19 C 1.50697 * 110.76075 * 203.74561 * 17 16 15 20 20 H 1.07991 * 120.00449 * 113.04945 * 19 17 16 21 21 C 1.37885 * 119.99686 * 293.32777 * 19 17 16 22 22 N 1.31516 * 119.99913 * 359.72095 * 21 19 17 23 23 Si 1.86798 * 119.99766 * 179.72528 * 21 19 17 24 24 H 1.48498 * 109.47416 * 59.99812 * 23 21 19 25 25 H 1.48508 * 109.46609 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46903 * 299.99397 * 23 21 19 27 27 C 1.54269 * 110.03046 * 204.99988 * 13 12 10 28 28 C 1.50704 * 109.47380 * 79.71861 * 10 9 8 29 29 O 1.20824 * 120.00469 * 240.00377 * 28 10 9 30 30 O 1.34231 * 119.99655 * 60.00407 * 28 10 9 31 31 C 1.37967 * 120.15236 * 359.48625 * 9 8 7 32 32 H 1.09001 * 109.47087 * 60.00067 * 1 2 3 33 33 H 1.09004 * 109.47504 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47504 * 300.00084 * 1 2 3 35 35 H 1.08001 * 120.07482 * 359.95502 * 6 5 3 36 36 H 1.08003 * 119.91985 * 179.97438 * 7 6 5 37 37 H 1.08001 * 119.84547 * 180.25312 * 8 7 6 38 38 H 1.00903 * 110.99815 * 81.04628 * 12 10 9 39 39 H 1.09003 * 110.03087 * 238.56564 * 15 13 12 40 40 H 1.08999 * 110.03482 * 359.97438 * 15 13 12 41 41 H 1.09001 * 110.48713 * 264.93393 * 16 15 13 42 42 H 1.09007 * 110.48904 * 142.28257 * 16 15 13 43 43 H 0.97000 * 119.99651 * 180.02562 * 22 21 19 44 44 H 1.08997 * 110.48714 * 98.42301 * 27 13 12 45 45 H 1.09008 * 110.59836 * 335.84038 * 27 13 12 46 46 H 0.96694 * 117.00064 * 180.02562 * 30 28 10 47 47 H 1.07998 * 120.08081 * 180.27817 * 31 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5387 1.2776 0.0006 6 6 4.3024 0.1085 0.0006 7 6 5.6794 0.1879 0.0006 8 6 6.3043 1.4226 -0.0049 9 6 5.5540 2.5849 0.0004 10 6 6.2433 3.9249 -0.0002 11 1 5.5509 4.6900 0.3509 12 7 7.4109 3.8753 0.8901 13 6 7.7518 5.2153 1.3862 14 1 7.5308 5.9632 0.6247 15 6 6.9595 5.5196 2.6696 16 6 7.9996 5.7522 3.7849 17 6 9.2823 6.1740 3.0261 18 1 9.2420 7.2275 2.7492 19 6 10.5100 5.8875 3.8518 20 1 11.2127 5.1330 3.5308 21 6 10.7330 6.5848 5.0203 22 7 9.8772 7.5037 5.4112 23 14 12.2508 6.2244 6.0477 24 1 13.4690 6.4814 5.2384 25 1 12.2574 7.1020 7.2457 26 1 12.2321 4.8027 6.4764 27 6 9.2458 5.2737 1.7663 28 6 6.6926 4.2581 -1.3996 29 8 7.8650 4.4360 -1.6315 30 8 5.7903 4.3572 -2.3884 31 6 4.1758 2.5200 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 3.8159 -0.8558 0.0009 36 1 6.2711 -0.7156 0.0010 37 1 7.3829 1.4791 -0.0090 38 1 8.2002 3.4491 0.4280 39 1 6.3539 6.4152 2.5311 40 1 6.3216 4.6732 2.9242 41 1 8.1720 4.8324 4.3437 42 1 7.6717 6.5494 4.4522 43 1 10.0343 7.9945 6.2330 44 1 9.8273 5.7214 0.9604 45 1 9.6217 4.2772 1.9985 46 1 6.1261 4.5725 -3.2692 47 1 3.5911 3.4280 0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606610884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:32 Heat of formation + Delta-G solvation = -174.642892 kcal Electronic energy + Delta-G solvation = -30237.975258 eV Core-core repulsion = 25963.429548 eV Total energy + Delta-G solvation = -4274.545710 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.94390 -41.46519 -39.88232 -39.24105 -37.50300 -37.28509 -36.08167 -34.33773 -32.41071 -32.26015 -29.90351 -29.15353 -28.47462 -27.01758 -25.60825 -24.99491 -23.64514 -22.49986 -21.56292 -21.09083 -20.55073 -19.35855 -18.76914 -18.41562 -18.20994 -18.05440 -17.38509 -17.01741 -16.89399 -16.68611 -16.54839 -16.06823 -15.86367 -15.20204 -15.05029 -14.58997 -14.50868 -14.48769 -14.27407 -13.99766 -13.63670 -13.58052 -13.31184 -13.02409 -12.94983 -12.74472 -12.70888 -12.64592 -12.40057 -12.33919 -12.13557 -11.90155 -11.81636 -11.81375 -11.68155 -11.58978 -11.34010 -10.99196 -10.80004 -10.42949 -10.05527 -9.90760 -9.72026 -8.09406 -6.18388 -0.34407 0.25169 1.02797 1.42641 1.44104 1.45448 1.51525 1.65544 2.00884 2.45377 2.68256 3.05018 3.21495 3.48621 3.66853 3.80576 3.93359 4.04345 4.09713 4.13662 4.18463 4.29691 4.31820 4.35371 4.35577 4.47936 4.69260 4.70482 4.78293 4.82900 4.91895 4.95908 5.15864 5.19026 5.19640 5.23839 5.24801 5.28434 5.40386 5.44079 5.46280 5.50935 5.67800 5.80682 5.86941 6.00407 6.03099 6.21272 6.41937 6.64467 6.86300 6.91679 7.48393 8.99623 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014328 B = 0.002363 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.790632 B =11848.197742 C =12564.804818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.511 3.489 4 O -0.537 6.537 5 C -0.145 4.145 6 C -0.049 4.049 7 C -0.126 4.126 8 C -0.061 4.061 9 C -0.087 4.087 10 C 0.137 3.863 11 H 0.131 0.869 12 N -0.641 5.641 13 C 0.096 3.904 14 H 0.041 0.959 15 C -0.107 4.107 16 C -0.091 4.091 17 C 0.042 3.958 18 H -0.002 1.002 19 C -0.530 4.530 20 H 0.053 0.947 21 C 0.010 3.990 22 N -0.921 5.921 23 Si 0.953 3.047 24 H -0.272 1.272 25 H -0.286 1.286 26 H -0.270 1.270 27 C -0.105 4.105 28 C 0.462 3.538 29 O -0.538 6.538 30 O -0.505 6.505 31 C -0.040 4.040 32 H 0.063 0.937 33 H 0.136 0.864 34 H 0.061 0.939 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.136 0.864 38 H 0.353 0.647 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.259 0.741 44 H 0.045 0.955 45 H 0.065 0.935 46 H 0.425 0.575 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.793 -17.950 -15.784 29.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.358 3.642 4 O -0.429 6.429 5 C -0.146 4.146 6 C -0.067 4.067 7 C -0.143 4.143 8 C -0.079 4.079 9 C -0.088 4.088 10 C 0.024 3.976 11 H 0.149 0.851 12 N -0.274 5.274 13 C -0.013 4.013 14 H 0.059 0.941 15 C -0.145 4.145 16 C -0.129 4.129 17 C 0.023 3.977 18 H 0.017 0.983 19 C -0.568 4.568 20 H 0.071 0.929 21 C -0.188 4.188 22 N -0.560 5.560 23 Si 0.778 3.222 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.195 1.195 27 C -0.143 4.143 28 C 0.303 3.697 29 O -0.428 6.428 30 O -0.318 6.318 31 C -0.059 4.059 32 H 0.082 0.918 33 H 0.154 0.846 34 H 0.079 0.921 35 H 0.178 0.822 36 H 0.181 0.819 37 H 0.154 0.846 38 H 0.175 0.825 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.083 0.917 46 H 0.287 0.713 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.254 -17.755 -14.787 28.838 hybrid contribution 1.288 1.223 -0.552 1.860 sum -15.965 -16.533 -15.339 27.632 Atomic orbital electron populations 1.23600 0.74257 1.05977 1.02594 1.86522 1.25220 1.31473 1.83828 1.21386 0.89448 0.81534 0.71814 1.90830 1.67503 1.37095 1.47451 1.19048 0.88724 0.95401 1.11406 1.21744 0.94068 0.98063 0.92813 1.21462 0.94345 0.98427 1.00116 1.21498 1.01066 0.92002 0.93370 1.19075 0.92586 0.93227 1.03932 1.20337 0.95513 0.97537 0.84164 0.85132 1.61091 1.08493 1.21071 1.36739 1.22088 0.95517 0.88050 0.95640 0.94055 1.22208 0.97453 1.00607 0.94279 1.22053 0.95794 0.98392 0.96667 1.19507 0.93526 0.93053 0.91633 0.98333 1.21471 1.07797 1.20376 1.07130 0.92886 1.25771 0.99231 0.94925 0.98880 1.70084 1.37474 1.24812 1.23642 0.85698 0.80160 0.78228 0.78086 1.19719 1.21131 1.19508 1.22434 0.93854 1.00358 0.97660 1.24769 0.83916 0.71774 0.89260 1.90754 1.20390 1.47632 1.84064 1.84549 1.42698 1.81891 1.22618 1.21034 0.93463 0.97359 0.94016 0.91842 0.84570 0.92064 0.82171 0.81879 0.84643 0.82464 0.92430 0.90572 0.94703 0.94736 0.93178 0.93668 0.91653 0.71318 0.84769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.35 -5.90 9.82 -56.21 -0.55 -6.45 16 3 C 0.51 11.01 7.90 70.33 0.56 11.57 16 4 O -0.54 -14.62 16.14 19.94 0.32 -14.30 16 5 C -0.14 -2.84 5.87 -20.10 -0.12 -2.95 16 6 C -0.05 -0.71 9.62 22.54 0.22 -0.49 16 7 C -0.13 -1.73 10.03 22.23 0.22 -1.51 16 8 C -0.06 -1.10 9.31 22.33 0.21 -0.89 16 9 C -0.09 -1.81 4.87 -19.91 -0.10 -1.91 16 10 C 0.14 3.19 2.54 43.42 0.11 3.30 16 11 H 0.13 2.93 7.63 -2.39 -0.02 2.92 16 12 N -0.64 -17.84 5.22 -473.45 -2.47 -20.32 16 13 C 0.10 3.30 2.86 45.64 0.13 3.43 16 14 H 0.04 1.41 7.67 -2.39 -0.02 1.39 16 15 C -0.11 -3.94 6.46 31.32 0.20 -3.73 16 16 C -0.09 -4.29 5.76 31.67 0.18 -4.11 16 17 C 0.04 2.13 2.73 -10.25 -0.03 2.10 16 18 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 19 C -0.53 -29.72 8.49 25.60 0.22 -29.50 16 20 H 0.05 2.91 7.77 -2.92 -0.02 2.89 16 21 C 0.01 0.59 5.36 84.66 0.45 1.05 16 22 N -0.92 -54.65 12.43 21.45 0.27 -54.38 16 23 Si 0.95 44.39 29.54 68.60 2.03 46.41 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 25 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 26 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 27 C -0.11 -4.35 5.66 31.67 0.18 -4.17 16 28 C 0.46 10.82 7.33 71.24 0.52 11.34 16 29 O -0.54 -15.84 16.41 21.97 0.36 -15.48 16 30 O -0.51 -8.93 13.34 -51.42 -0.69 -9.62 16 31 C -0.04 -0.84 9.21 22.54 0.21 -0.64 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 35 H 0.16 1.57 7.61 -2.91 -0.02 1.55 16 36 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 37 H 0.14 2.33 7.24 -2.91 -0.02 2.31 16 38 H 0.35 9.79 6.68 -89.69 -0.60 9.19 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.08 2.57 7.92 -2.39 -0.02 2.55 16 41 H 0.03 1.70 8.04 -2.39 -0.02 1.68 16 42 H 0.03 1.79 7.64 -2.38 -0.02 1.77 16 43 H 0.26 14.70 8.31 -92.71 -0.77 13.92 16 44 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.06 2.68 7.85 -2.38 -0.02 2.66 16 46 H 0.43 3.97 9.10 -74.06 -0.67 3.30 16 47 H 0.13 2.91 7.63 -2.91 -0.02 2.89 16 Total: -1.00 -72.68 396.75 3.37 -69.32 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -0.26 Total: 20.43 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 4.36 Total: -15.61 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -2.21 Total: -74.70 kcal Atomic # 8 Polarization: -45.29 SS G_CDS: -0.56 Total: -45.84 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -72.68 3.37 -69.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606610884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.327 kcal (2) G-P(sol) polarization free energy of solvation -72.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds