Wall clock time and date at job start Wed Apr 1 2020 04:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46898 * 111.00387 * 2 1 4 4 C 1.53004 * 109.46947 * 66.04765 * 3 2 1 5 5 N 1.46499 * 109.47198 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 3 7 7 O 1.21543 * 120.00296 * 359.72071 * 6 5 4 8 8 C 1.47877 * 119.99819 * 179.72371 * 6 5 4 9 9 C 1.39449 * 121.11218 * 359.71668 * 8 6 5 10 10 C 1.38625 * 119.37595 * 179.73836 * 9 8 6 11 11 N 1.31587 * 121.62919 * 0.57721 * 10 9 8 12 12 C 1.32212 * 121.86894 * 359.69160 * 11 10 9 13 13 N 1.37213 * 134.67004 * 180.02562 * 12 11 10 14 14 H 0.97001 * 125.86998 * 359.97438 * 13 12 11 15 15 N 1.28779 * 108.25561 * 180.02562 * 13 12 11 16 16 N 1.28689 * 111.76178 * 0.02562 * 15 13 12 17 17 C 1.34392 * 109.15148 * 359.97438 * 16 15 13 18 18 C 1.46906 * 111.00013 * 236.04852 * 2 1 3 19 19 C 1.50704 * 109.46950 * 293.95692 * 18 2 1 20 20 O 1.21292 * 120.00070 * 359.97438 * 19 18 2 21 21 N 1.34774 * 119.99609 * 179.97438 * 19 18 2 22 22 C 1.37101 * 119.99744 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00215 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99832 * 179.97438 * 22 21 19 25 25 N 1.31414 * 119.99419 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 120.00201 * 0.02562 * 24 22 21 27 27 H 1.48492 * 109.47280 * 89.99556 * 26 24 22 28 28 H 1.48493 * 109.47044 * 209.99569 * 26 24 22 29 29 H 1.48506 * 109.47101 * 329.99387 * 26 24 22 30 30 H 1.09006 * 109.47151 * 59.99589 * 1 2 3 31 31 H 1.09000 * 109.47496 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47031 * 299.99782 * 1 2 3 33 33 H 1.08995 * 109.47478 * 306.05246 * 3 2 1 34 34 H 1.09006 * 109.47065 * 186.04643 * 3 2 1 35 35 H 1.09009 * 109.46730 * 59.99875 * 4 3 2 36 36 H 1.08998 * 109.46846 * 300.00419 * 4 3 2 37 37 H 0.97001 * 119.99790 * 359.97438 * 5 4 3 38 38 H 1.08001 * 120.31368 * 359.97438 * 9 8 6 39 39 H 1.07992 * 119.18477 * 180.26862 * 10 9 8 40 40 H 1.09007 * 109.46952 * 53.95217 * 18 2 1 41 41 H 1.08995 * 109.47632 * 173.95335 * 18 2 1 42 42 H 0.97000 * 120.00714 * 0.02562 * 21 19 18 43 43 H 0.97008 * 119.99466 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 7 2.1561 3.4252 1.3181 6 6 1.9599 4.2223 2.3871 7 8 1.3435 3.8079 3.3492 8 6 2.4947 5.6010 2.3895 9 6 3.2101 6.0982 1.3006 10 6 3.6905 7.3980 1.3389 11 7 3.4981 8.1743 2.3839 12 6 2.8329 7.7596 3.4485 13 7 2.4844 8.3253 4.6490 14 1 2.6992 9.2266 4.9363 15 7 1.8242 7.4536 5.3292 16 7 1.6975 6.3447 4.6885 17 6 2.3046 6.4536 3.4945 18 6 1.9954 -0.7660 -1.1377 19 6 1.6368 -2.2204 -0.9730 20 8 1.0053 -2.5833 -0.0031 21 7 2.0179 -3.1179 -1.9034 22 6 1.6921 -4.4411 -1.7534 23 1 1.1298 -4.7643 -0.8898 24 6 2.0845 -5.3664 -2.7130 25 7 1.7718 -6.6346 -2.5693 26 14 3.0565 -4.8074 -4.2070 27 1 4.5091 -4.8749 -3.9061 28 1 2.7478 -5.6932 -5.3581 29 1 2.6853 -3.4096 -4.5444 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.5611 1.9274 -0.8308 34 1 3.0798 1.3443 -0.1083 35 1 2.0659 1.5013 2.1492 36 1 0.5473 2.0844 1.4266 37 1 2.6483 3.7558 0.5504 38 1 3.3851 5.4777 0.4341 39 1 4.2404 7.7813 0.4922 40 1 1.5610 -0.3872 -2.0629 41 1 3.0796 -0.6611 -1.1758 42 1 2.5233 -2.8278 -2.6789 43 1 2.0461 -7.2806 -3.2390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690961849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:04 Heat of formation + Delta-G solvation = 86.425439 kcal Electronic energy + Delta-G solvation = -28522.479078 eV Core-core repulsion = 24220.299299 eV Total energy + Delta-G solvation = -4302.179779 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.95368 -40.44656 -39.22494 -38.79226 -36.96733 -34.91551 -34.73660 -33.89587 -32.62054 -31.69173 -31.39759 -29.66417 -27.89803 -26.30809 -25.31090 -24.47365 -24.07028 -23.19276 -21.49280 -21.31870 -19.40585 -19.37801 -19.06706 -18.28196 -18.02279 -17.16152 -16.53321 -16.23034 -16.00042 -15.78519 -15.48453 -15.17315 -14.96599 -14.74509 -14.25807 -13.93928 -13.84146 -13.63116 -13.47538 -13.15840 -13.08899 -12.84102 -12.45796 -12.21251 -12.11740 -12.07615 -11.89386 -11.57688 -11.40836 -11.17043 -11.06704 -10.74585 -10.61704 -10.07203 -9.98711 -9.92439 -9.69022 -9.55557 -9.35472 -8.62732 -8.19789 -8.04386 -6.31989 -3.83500 -0.54911 0.23964 1.57729 1.65780 2.34848 2.48565 3.00012 3.04913 3.09145 3.13426 3.17757 3.61783 3.71306 3.77719 3.84554 4.02904 4.09030 4.12651 4.49460 4.65325 4.72298 4.84815 4.86929 4.94017 5.07620 5.18973 5.26412 5.44582 5.52245 5.56409 5.71461 5.75817 5.78316 5.87057 5.93478 6.01146 6.04170 6.48457 6.85304 6.99984 7.07987 7.19588 7.56987 7.62786 7.78292 8.13650 8.58924 8.94412 9.41179 9.81937 10.81108 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.028854 B = 0.001603 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.178680 B =17461.094158 C =18205.693489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.515 5.515 3 C 0.044 3.956 4 C 0.121 3.879 5 N -0.720 5.720 6 C 0.550 3.450 7 O -0.493 6.493 8 C -0.006 4.006 9 C -0.141 4.141 10 C 0.162 3.838 11 N -0.458 5.458 12 C 0.214 3.786 13 N -0.405 5.405 14 H 0.459 0.541 15 N 0.005 4.995 16 N -0.208 5.208 17 C 0.003 3.997 18 C 0.045 3.955 19 C 0.452 3.548 20 O -0.557 6.557 21 N -0.591 5.591 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.017 0.983 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.398 0.602 38 H 0.159 0.841 39 H 0.184 0.816 40 H 0.050 0.950 41 H 0.090 0.910 42 H 0.370 0.630 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.782 33.916 2.404 34.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.239 5.239 3 C -0.085 4.085 4 C -0.002 4.002 5 N -0.373 5.373 6 C 0.334 3.666 7 O -0.366 6.366 8 C -0.022 4.022 9 C -0.165 4.165 10 C -0.011 4.011 11 N -0.171 5.171 12 C -0.029 4.029 13 N -0.135 5.135 14 H 0.307 0.693 15 N 0.022 4.978 16 N -0.084 5.084 17 C -0.126 4.126 18 C -0.087 4.087 19 C 0.237 3.763 20 O -0.439 6.439 21 N -0.230 5.230 22 C -0.433 4.433 23 H 0.138 0.862 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.707 3.293 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.035 0.965 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.233 0.767 38 H 0.177 0.823 39 H 0.201 0.799 40 H 0.068 0.932 41 H 0.108 0.892 42 H 0.202 0.798 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.554 33.354 5.555 34.267 hybrid contribution 1.232 0.923 -3.247 3.594 sum 6.786 34.278 2.308 35.019 Atomic orbital electron populations 1.22657 0.86200 1.04950 0.99342 1.61422 1.09155 1.10435 1.42881 1.22255 1.00817 0.89793 0.95596 1.21428 0.99983 0.79825 0.98980 1.45782 1.57962 1.14657 1.18944 1.17825 0.81125 0.84223 0.83465 1.90922 1.38363 1.74081 1.33205 1.19678 0.96903 0.94029 0.91626 1.22427 0.97803 0.97763 0.98515 1.22870 0.94652 0.89302 0.94231 1.66328 1.14180 1.37892 0.98743 1.19877 1.01206 0.91285 0.90578 1.44752 1.41570 1.16426 1.10736 0.69307 1.78304 1.07144 0.94116 1.18193 1.75630 1.17218 1.12358 1.03183 1.20137 1.02584 0.94209 0.95715 1.21902 1.00786 0.94107 0.91887 1.19604 0.85235 0.86396 0.85043 1.90543 1.42540 1.79872 1.30897 1.42203 1.51061 1.08380 1.21398 1.19434 1.33889 0.80291 1.09732 0.86236 1.25042 0.97893 0.95138 0.98102 1.69627 1.45610 1.01154 1.35686 0.86668 0.80895 0.78652 0.83122 1.19616 1.20220 1.19573 0.96483 0.88277 0.91581 0.94395 0.90134 0.89686 0.90644 0.76676 0.82318 0.79895 0.93206 0.89153 0.79757 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 8.96 60.06 0.54 0.78 16 2 N -0.51 -7.56 4.50 -244.36 -1.10 -8.66 16 3 C 0.04 0.44 5.07 -3.82 -0.02 0.42 16 4 C 0.12 1.26 5.60 -4.04 -0.02 1.23 16 5 N -0.72 -5.67 5.51 -61.24 -0.34 -6.01 16 6 C 0.55 5.98 7.79 -12.31 -0.10 5.88 16 7 O -0.49 -7.75 16.27 5.33 0.09 -7.66 16 8 C -0.01 -0.05 5.92 -104.51 -0.62 -0.67 16 9 C -0.14 -0.55 9.61 -38.99 -0.37 -0.93 16 10 C 0.16 0.58 11.14 -17.51 -0.20 0.39 16 11 N -0.46 -3.02 10.35 -12.39 -0.13 -3.14 16 12 C 0.21 1.80 8.56 -156.21 -1.34 0.46 16 13 N -0.40 -2.80 7.06 31.11 0.22 -2.58 16 14 H 0.46 1.22 8.96 -190.25 -1.71 -0.48 16 15 N 0.01 0.06 13.29 60.35 0.80 0.86 16 16 N -0.21 -2.70 11.92 32.23 0.38 -2.31 16 17 C 0.00 0.03 6.97 -84.73 -0.59 -0.56 16 18 C 0.04 0.69 5.45 -4.97 -0.03 0.66 16 19 C 0.45 9.89 7.47 -10.98 -0.08 9.81 16 20 O -0.56 -14.51 13.91 5.55 0.08 -14.43 16 21 N -0.59 -13.65 5.09 -10.96 -0.06 -13.71 16 22 C -0.30 -8.47 10.16 -14.93 -0.15 -8.62 16 23 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 24 C 0.04 1.11 5.50 -17.46 -0.10 1.02 16 25 N -0.88 -25.47 13.96 55.50 0.77 -24.69 16 26 Si 0.88 18.91 27.74 -169.99 -4.71 14.19 16 27 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 28 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 29 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 30 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 1.86 5.82 -51.93 -0.30 1.56 16 32 H 0.07 0.90 6.47 -51.93 -0.34 0.56 16 33 H 0.04 0.31 8.12 -51.93 -0.42 -0.11 16 34 H 0.08 0.66 7.93 -51.93 -0.41 0.25 16 35 H 0.08 1.07 8.14 -51.92 -0.42 0.64 16 36 H 0.08 0.88 6.55 -51.93 -0.34 0.54 16 37 H 0.40 1.56 6.62 -40.82 -0.27 1.29 16 38 H 0.16 0.00 6.53 -52.49 -0.34 -0.35 16 39 H 0.18 -0.10 8.06 -52.49 -0.42 -0.52 16 40 H 0.05 0.67 8.12 -51.92 -0.42 0.25 16 41 H 0.09 1.18 7.93 -51.93 -0.41 0.76 16 42 H 0.37 7.43 5.76 -40.82 -0.24 7.19 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 367.41 15.07 5.54 5.54 Total: -1.00 -39.20 367.41 -7.55 -46.75 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.02 Total: 6.00 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: -3.07 Total: 9.86 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: 0.56 Total: -60.25 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: 0.16 Total: -22.09 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.71 Total: 14.19 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -39.20 -7.55 -46.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690961849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.179 kcal (2) G-P(sol) polarization free energy of solvation -39.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds