Wall clock time and date at job start Wed Apr 1 2020 04:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46898 * 111.00387 * 2 1 4 4 C 1.53004 * 109.46947 * 66.04765 * 3 2 1 5 5 N 1.46499 * 109.47198 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 3 7 7 O 1.21543 * 120.00296 * 359.72071 * 6 5 4 8 8 C 1.47877 * 119.99819 * 179.72371 * 6 5 4 9 9 C 1.39449 * 121.11218 * 359.71668 * 8 6 5 10 10 C 1.38625 * 119.37595 * 179.73836 * 9 8 6 11 11 N 1.31587 * 121.62919 * 0.57721 * 10 9 8 12 12 C 1.32212 * 121.86894 * 359.69160 * 11 10 9 13 13 N 1.37213 * 134.67004 * 180.02562 * 12 11 10 14 14 H 0.97001 * 125.86998 * 359.97438 * 13 12 11 15 15 N 1.28779 * 108.25561 * 180.02562 * 13 12 11 16 16 N 1.28689 * 111.76178 * 0.02562 * 15 13 12 17 17 C 1.34392 * 109.15148 * 359.97438 * 16 15 13 18 18 C 1.46906 * 111.00013 * 236.04852 * 2 1 3 19 19 C 1.50704 * 109.46950 * 293.95692 * 18 2 1 20 20 O 1.21292 * 120.00070 * 359.97438 * 19 18 2 21 21 N 1.34774 * 119.99609 * 179.97438 * 19 18 2 22 22 C 1.37101 * 119.99744 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00215 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99832 * 179.97438 * 22 21 19 25 25 N 1.31414 * 119.99419 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 120.00201 * 0.02562 * 24 22 21 27 27 H 1.48492 * 109.47280 * 89.99556 * 26 24 22 28 28 H 1.48493 * 109.47044 * 209.99569 * 26 24 22 29 29 H 1.48506 * 109.47101 * 329.99387 * 26 24 22 30 30 H 1.09006 * 109.47151 * 59.99589 * 1 2 3 31 31 H 1.09000 * 109.47496 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47031 * 299.99782 * 1 2 3 33 33 H 1.08995 * 109.47478 * 306.05246 * 3 2 1 34 34 H 1.09006 * 109.47065 * 186.04643 * 3 2 1 35 35 H 1.09009 * 109.46730 * 59.99875 * 4 3 2 36 36 H 1.08998 * 109.46846 * 300.00419 * 4 3 2 37 37 H 0.97001 * 119.99790 * 359.97438 * 5 4 3 38 38 H 1.08001 * 120.31368 * 359.97438 * 9 8 6 39 39 H 1.07992 * 119.18477 * 180.26862 * 10 9 8 40 40 H 1.09007 * 109.46952 * 53.95217 * 18 2 1 41 41 H 1.08995 * 109.47632 * 173.95335 * 18 2 1 42 42 H 0.97000 * 120.00714 * 0.02562 * 21 19 18 43 43 H 0.97008 * 119.99466 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 7 2.1561 3.4252 1.3181 6 6 1.9599 4.2223 2.3871 7 8 1.3435 3.8079 3.3492 8 6 2.4947 5.6010 2.3895 9 6 3.2101 6.0982 1.3006 10 6 3.6905 7.3980 1.3389 11 7 3.4981 8.1743 2.3839 12 6 2.8329 7.7596 3.4485 13 7 2.4844 8.3253 4.6490 14 1 2.6992 9.2266 4.9363 15 7 1.8242 7.4536 5.3292 16 7 1.6975 6.3447 4.6885 17 6 2.3046 6.4536 3.4945 18 6 1.9954 -0.7660 -1.1377 19 6 1.6368 -2.2204 -0.9730 20 8 1.0053 -2.5833 -0.0031 21 7 2.0179 -3.1179 -1.9034 22 6 1.6921 -4.4411 -1.7534 23 1 1.1298 -4.7643 -0.8898 24 6 2.0845 -5.3664 -2.7130 25 7 1.7718 -6.6346 -2.5693 26 14 3.0565 -4.8074 -4.2070 27 1 4.5091 -4.8749 -3.9061 28 1 2.7478 -5.6932 -5.3581 29 1 2.6853 -3.4096 -4.5444 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.5611 1.9274 -0.8308 34 1 3.0798 1.3443 -0.1083 35 1 2.0659 1.5013 2.1492 36 1 0.5473 2.0844 1.4266 37 1 2.6483 3.7558 0.5504 38 1 3.3851 5.4777 0.4341 39 1 4.2404 7.7813 0.4922 40 1 1.5610 -0.3872 -2.0629 41 1 3.0796 -0.6611 -1.1758 42 1 2.5233 -2.8278 -2.6789 43 1 2.0461 -7.2806 -3.2390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690961849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:03 Heat of formation + Delta-G solvation = 49.614257 kcal Electronic energy + Delta-G solvation = -28524.075330 eV Core-core repulsion = 24220.299299 eV Total energy + Delta-G solvation = -4303.776031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.54607 -41.15517 -40.45729 -39.73702 -38.18736 -36.06800 -35.61788 -35.33999 -33.71778 -33.22127 -31.91172 -30.64192 -29.14168 -27.18598 -26.57530 -25.27890 -24.97560 -24.03927 -22.31210 -22.16607 -21.20615 -20.14167 -20.02911 -19.63639 -18.60159 -17.77733 -17.71177 -17.32979 -16.86348 -16.76199 -16.55223 -16.30375 -15.96445 -15.65221 -15.46627 -15.27519 -14.84185 -14.61004 -14.49236 -14.23695 -14.18511 -13.92817 -13.67342 -13.50669 -13.06712 -12.91350 -12.79256 -12.71846 -12.52897 -12.51038 -12.36871 -12.07616 -11.94020 -11.52537 -11.42934 -10.66763 -10.43874 -10.33413 -10.31711 -10.19280 -10.08985 -9.18503 -8.37358 -5.98328 -1.08114 -0.19752 0.96672 1.12165 1.32989 1.39931 1.48505 1.71768 1.75838 2.02240 2.27285 2.53917 2.63786 2.78997 3.14871 3.18911 3.28963 3.32395 3.45445 3.73055 3.88271 4.11688 4.14044 4.18673 4.34683 4.35901 4.41172 4.49652 4.53391 4.66611 4.68396 4.71999 4.91722 5.00070 5.20066 5.25278 5.28472 5.57099 5.63992 5.92017 6.03255 6.20473 6.42314 6.43664 6.64491 6.93671 6.99277 7.11392 7.45233 8.04242 8.80554 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.028854 B = 0.001603 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.178680 B =17461.094158 C =18205.693489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.545 5.545 3 C 0.054 3.946 4 C 0.127 3.873 5 N -0.695 5.695 6 C 0.548 3.452 7 O -0.558 6.558 8 C -0.040 4.040 9 C -0.101 4.101 10 C 0.176 3.824 11 N -0.465 5.465 12 C 0.206 3.794 13 N -0.383 5.383 14 H 0.474 0.526 15 N -0.015 5.015 16 N -0.265 5.265 17 C -0.028 4.028 18 C 0.059 3.941 19 C 0.448 3.552 20 O -0.609 6.609 21 N -0.592 5.592 22 C -0.328 4.328 23 H 0.051 0.949 24 C -0.019 4.019 25 N -0.938 5.938 26 Si 0.968 3.032 27 H -0.257 1.257 28 H -0.279 1.279 29 H -0.226 1.226 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.422 0.578 38 H 0.209 0.791 39 H 0.239 0.761 40 H 0.086 0.914 41 H 0.129 0.871 42 H 0.390 0.610 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.314 38.140 -2.528 39.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.270 5.270 3 C -0.074 4.074 4 C 0.002 3.998 5 N -0.349 5.349 6 C 0.334 3.666 7 O -0.435 6.435 8 C -0.056 4.056 9 C -0.124 4.124 10 C 0.003 3.997 11 N -0.179 5.179 12 C -0.037 4.037 13 N -0.116 5.116 14 H 0.326 0.674 15 N 0.002 4.998 16 N -0.139 5.139 17 C -0.159 4.159 18 C -0.072 4.072 19 C 0.236 3.764 20 O -0.493 6.493 21 N -0.234 5.234 22 C -0.457 4.457 23 H 0.070 0.930 24 C -0.217 4.217 25 N -0.579 5.579 26 Si 0.788 3.212 27 H -0.181 1.181 28 H -0.204 1.204 29 H -0.149 1.149 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.127 0.873 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.262 0.738 38 H 0.226 0.774 39 H 0.255 0.745 40 H 0.104 0.896 41 H 0.147 0.853 42 H 0.226 0.774 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.105 37.655 0.622 38.745 hybrid contribution 0.137 -0.335 -1.689 1.728 sum 9.243 37.319 -1.068 38.462 Atomic orbital electron populations 1.22463 0.87131 1.02160 1.00775 1.61260 1.08732 1.13650 1.43390 1.22273 1.02453 0.87030 0.95624 1.21185 0.98837 0.80865 0.98867 1.45455 1.57209 1.13249 1.19029 1.18264 0.80101 0.85232 0.82975 1.90892 1.41416 1.75502 1.35693 1.19672 0.99922 0.92863 0.93189 1.23046 0.93572 0.98142 0.97636 1.23930 0.92872 0.88669 0.94237 1.66511 1.14005 1.38549 0.98802 1.19978 1.01807 0.90590 0.91348 1.44740 1.40012 1.16609 1.10266 0.67429 1.78186 1.08413 0.94385 1.18789 1.75530 1.19495 1.13763 1.05136 1.20571 1.03480 0.95990 0.95814 1.21838 1.03210 0.88671 0.93498 1.21058 0.82856 0.89173 0.83351 1.90540 1.44232 1.81547 1.32976 1.42013 1.51963 1.06652 1.22795 1.18988 1.34800 0.83315 1.08595 0.93046 1.26174 0.98733 0.94625 1.02143 1.69828 1.47373 1.03138 1.37553 0.85322 0.78917 0.80298 0.76682 1.18110 1.20383 1.14922 0.93990 0.93075 0.91236 0.91034 0.87257 0.92646 0.92471 0.73813 0.77372 0.74528 0.89634 0.85314 0.77380 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 8.96 127.69 1.14 1.81 16 2 N -0.55 -14.63 4.50 -927.03 -4.17 -18.80 16 3 C 0.05 0.81 5.07 86.30 0.44 1.25 16 4 C 0.13 2.43 5.60 86.38 0.48 2.91 16 5 N -0.69 -8.95 5.51 -465.93 -2.57 -11.52 16 6 C 0.55 11.65 7.79 86.80 0.68 12.32 16 7 O -0.56 -18.76 16.27 -3.85 -0.06 -18.82 16 8 C -0.04 -0.63 5.92 -19.79 -0.12 -0.75 16 9 C -0.10 -0.27 9.61 22.65 0.22 -0.05 16 10 C 0.18 0.27 11.14 84.82 0.95 1.22 16 11 N -0.46 -4.57 10.35 -193.10 -2.00 -6.57 16 12 C 0.21 3.26 8.56 134.17 1.15 4.40 16 13 N -0.38 -5.39 7.06 -55.48 -0.39 -5.78 16 14 H 0.47 2.44 8.96 -219.83 -1.97 0.47 16 15 N -0.02 -0.34 13.29 37.02 0.49 0.15 16 16 N -0.26 -7.45 11.92 -51.94 -0.62 -8.07 16 17 C -0.03 -0.61 6.97 40.06 0.28 -0.33 16 18 C 0.06 1.57 5.45 85.56 0.47 2.04 16 19 C 0.45 19.41 7.47 87.66 0.66 20.06 16 20 O -0.61 -33.32 13.91 -3.07 -0.04 -33.36 16 21 N -0.59 -26.90 5.09 -306.98 -1.56 -28.46 16 22 C -0.33 -18.99 10.16 84.04 0.85 -18.14 16 23 H 0.05 3.59 7.39 -2.91 -0.02 3.57 16 24 C -0.02 -1.02 5.50 84.93 0.47 -0.56 16 25 N -0.94 -56.48 13.96 21.66 0.30 -56.18 16 26 Si 0.97 37.52 27.74 68.60 1.90 39.43 16 27 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 28 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 29 H -0.23 -7.11 6.52 99.48 0.65 -6.46 16 30 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.05 1.99 5.82 -2.39 -0.01 1.98 16 32 H 0.07 1.92 6.47 -2.39 -0.02 1.91 16 33 H 0.07 0.69 8.12 -2.39 -0.02 0.67 16 34 H 0.11 1.08 7.93 -2.38 -0.02 1.07 16 35 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.06 1.32 6.55 -2.39 -0.02 1.30 16 37 H 0.42 0.93 6.62 -92.71 -0.61 0.32 16 38 H 0.21 -1.68 6.53 -2.91 -0.02 -1.69 16 39 H 0.24 -2.20 8.06 -2.91 -0.02 -2.23 16 40 H 0.09 1.77 8.12 -2.38 -0.02 1.75 16 41 H 0.13 2.54 7.93 -2.39 -0.02 2.52 16 42 H 0.39 14.26 5.76 -92.71 -0.53 13.72 16 43 H 0.28 15.28 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -101.74 367.41 -3.12 -104.86 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -2.05 Total: 16.94 kcal Atomic # 6 Polarization: 18.52 SS G_CDS: 7.66 Total: 26.18 kcal Atomic # 7 Polarization: -124.71 SS G_CDS: -10.52 Total: -135.23 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -0.11 Total: -52.18 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 1.90 Total: 39.43 kcal Total: -101.74 -3.12 -104.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690961849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.474 kcal (2) G-P(sol) polarization free energy of solvation -101.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds