Wall clock time and date at job start Wed Apr 1 2020 04:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00237 * 2 1 4 4 H 1.48506 * 109.46823 * 270.00015 * 3 2 1 5 5 H 1.48495 * 109.47148 * 29.99600 * 3 2 1 6 6 H 1.48496 * 109.47204 * 150.00154 * 3 2 1 7 7 C 1.37885 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00084 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99585 * 180.02562 * 7 2 1 10 10 N 1.46509 * 109.46880 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99475 * 269.99609 * 10 9 7 12 12 O 1.21284 * 120.00352 * 3.81644 * 11 10 9 13 13 C 1.50707 * 119.99539 * 183.81572 * 11 10 9 14 14 N 1.46897 * 109.46978 * 184.95421 * 13 11 10 15 15 C 1.47016 * 111.00289 * 63.81937 * 14 13 11 16 16 C 1.53093 * 109.25950 * 182.39347 * 15 14 13 17 17 O 1.43014 * 109.25633 * 303.15247 * 16 15 14 18 18 C 1.43016 * 113.74078 * 58.67313 * 17 16 15 19 19 H 1.08998 * 109.50463 * 61.26387 * 18 17 16 20 20 C 1.50699 * 109.54016 * 181.37364 * 18 17 16 21 21 N 1.34780 * 119.99631 * 184.80369 * 20 18 17 22 22 O 1.21279 * 120.00683 * 4.80055 * 20 18 17 23 23 C 1.47008 * 110.99981 * 187.45632 * 14 13 11 24 24 C 1.39927 * 119.99925 * 89.99695 * 10 9 7 25 25 C 1.38865 * 120.06746 * 108.38687 * 24 10 9 26 26 C 1.38117 * 119.92569 * 180.02562 * 25 24 10 27 27 C 1.38276 * 120.06916 * 0.25409 * 26 25 24 28 28 C 1.38274 * 120.14280 * 359.48866 * 27 26 25 29 29 C 1.38112 * 120.07183 * 0.51463 * 28 27 26 30 30 H 0.97002 * 119.99590 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.47808 * 60.00085 * 9 7 2 32 32 H 1.09004 * 109.47029 * 299.99570 * 9 7 2 33 33 H 1.09002 * 109.46929 * 304.95401 * 13 11 10 34 34 H 1.08998 * 109.46705 * 64.95286 * 13 11 10 35 35 H 1.09000 * 109.50577 * 302.33174 * 15 14 13 36 36 H 1.09001 * 109.50302 * 62.45796 * 15 14 13 37 37 H 1.08997 * 109.50714 * 183.22126 * 16 15 14 38 38 H 1.08996 * 109.54376 * 63.10926 * 16 15 14 39 39 H 0.97000 * 120.00389 * 0.02562 * 21 20 18 40 40 H 0.97006 * 120.00197 * 180.02562 * 21 20 18 41 41 H 1.08997 * 109.50764 * 297.54384 * 23 14 13 42 42 H 1.09000 * 109.50842 * 57.67279 * 23 14 13 43 43 H 1.08005 * 120.04034 * 0.03811 * 25 24 10 44 44 H 1.08000 * 119.96221 * 179.97438 * 26 25 24 45 45 H 1.08008 * 119.92899 * 179.72209 * 27 26 25 46 46 H 1.08005 * 119.96634 * 180.23564 * 28 27 26 47 47 H 1.08000 * 120.03841 * 179.76941 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 4.2240 -3.2109 1.1682 12 8 3.9563 -2.6645 2.2174 13 6 4.8074 -4.6004 1.1696 14 7 4.8435 -5.1150 2.5450 15 6 3.4856 -5.2558 3.0906 16 6 3.5718 -5.7363 4.5416 17 8 4.3045 -6.9636 4.5893 18 6 5.6317 -6.8625 4.0663 19 1 6.2012 -6.1435 4.6553 20 6 6.3030 -8.2102 4.1311 21 7 7.5984 -8.3353 3.7803 22 8 5.6778 -9.1822 4.4989 23 6 5.5664 -6.3933 2.6105 24 6 4.2334 -3.2347 -1.2109 25 6 5.5342 -3.4920 -1.6235 26 6 5.7614 -4.1426 -2.8205 27 6 4.6955 -4.5329 -3.6101 28 6 3.3990 -4.2829 -3.1995 29 6 3.1650 -3.6327 -2.0037 30 1 -0.4849 0.8401 -0.0004 31 1 3.8745 -0.6801 0.8911 32 1 3.8751 -0.6805 -0.8889 33 1 4.1904 -5.2541 0.5531 34 1 5.8196 -4.5698 0.7664 35 1 2.9776 -4.2920 3.0559 36 1 2.9292 -5.9827 2.4989 37 1 2.5669 -5.8970 4.9321 38 1 4.0809 -4.9848 5.1450 39 1 8.0986 -7.5579 3.4866 40 1 8.0304 -9.2028 3.8216 41 1 5.0433 -7.1384 2.0111 42 1 6.5773 -6.2600 2.2254 43 1 6.3672 -3.1839 -1.0090 44 1 6.7728 -4.3426 -3.1421 45 1 4.8759 -5.0375 -4.5479 46 1 2.5685 -4.5924 -3.8167 47 1 2.1522 -3.4344 -1.6853 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051131230.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:54 Heat of formation + Delta-G solvation = -60.592116 kcal Electronic energy + Delta-G solvation = -31220.858520 eV Core-core repulsion = 26983.551174 eV Total energy + Delta-G solvation = -4237.307346 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.60373 -39.97482 -38.75975 -38.03342 -35.70437 -34.86196 -34.05987 -32.68849 -31.37575 -30.81954 -29.89681 -29.34598 -27.66890 -25.68804 -24.44136 -22.57336 -22.42115 -22.32370 -21.23106 -20.44337 -19.13276 -18.07397 -17.46138 -17.05131 -17.00413 -16.34795 -16.09613 -15.85800 -15.58312 -15.49020 -15.15704 -14.92223 -14.79538 -14.30837 -14.13886 -13.90038 -13.78244 -13.62256 -13.24584 -13.13065 -12.75854 -12.56078 -12.43273 -12.13016 -11.85937 -11.83291 -11.60464 -11.32780 -11.01151 -10.99119 -10.82998 -10.63460 -10.20520 -10.07176 -10.03244 -9.92027 -9.62812 -9.29193 -8.79406 -8.74351 -8.65594 -8.37492 -7.88285 -6.16026 -4.15501 1.42354 1.55404 2.28198 2.80409 3.09617 3.21875 3.26178 3.33539 3.34465 3.82820 3.91497 4.00057 4.33303 4.49927 4.59792 4.74772 4.79218 4.95122 5.03838 5.08537 5.12952 5.18099 5.25586 5.29709 5.35317 5.37612 5.42416 5.58165 5.58800 5.74555 5.89141 5.91771 6.01986 6.19936 6.40967 6.46529 6.55188 6.66949 6.70882 6.75854 6.78092 6.83781 6.86812 7.02317 7.08009 7.24737 7.50542 7.94328 8.12276 8.36491 8.77048 8.85484 9.43415 10.96828 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010825 B = 0.003376 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.921289 B = 8292.064898 C = 9990.365411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.872 3.128 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.076 0.924 9 C 0.220 3.780 10 N -0.557 5.557 11 C 0.517 3.483 12 O -0.508 6.508 13 C 0.039 3.961 14 N -0.515 5.515 15 C 0.007 3.993 16 C 0.067 3.933 17 O -0.360 6.360 18 C 0.078 3.922 19 H 0.095 0.905 20 C 0.527 3.473 21 N -0.852 5.852 22 O -0.520 6.520 23 C 0.030 3.970 24 C 0.147 3.853 25 C -0.134 4.134 26 C -0.116 4.116 27 C -0.129 4.129 28 C -0.112 4.112 29 C -0.103 4.103 30 H 0.265 0.735 31 H 0.046 0.954 32 H 0.027 0.973 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.041 0.959 37 H 0.106 0.894 38 H 0.066 0.934 39 H 0.403 0.597 40 H 0.405 0.595 41 H 0.049 0.951 42 H 0.089 0.911 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.123 0.877 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.484 -13.027 -1.206 21.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.568 4.568 8 H 0.094 0.906 9 C 0.101 3.899 10 N -0.287 5.287 11 C 0.304 3.696 12 O -0.382 6.382 13 C -0.091 4.091 14 N -0.240 5.240 15 C -0.120 4.120 16 C -0.009 4.009 17 O -0.278 6.278 18 C 0.016 3.984 19 H 0.113 0.887 20 C 0.310 3.690 21 N -0.419 5.419 22 O -0.394 6.394 23 C -0.099 4.099 24 C 0.056 3.944 25 C -0.153 4.153 26 C -0.135 4.135 27 C -0.147 4.147 28 C -0.131 4.131 29 C -0.122 4.122 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.134 0.866 36 H 0.059 0.941 37 H 0.124 0.876 38 H 0.084 0.916 39 H 0.232 0.768 40 H 0.237 0.763 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.141 0.859 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 15.735 -12.909 0.058 20.353 hybrid contribution 0.392 0.774 -1.040 1.355 sum 16.128 -12.135 -0.982 20.207 Atomic orbital electron populations 1.69882 1.06157 1.27098 1.50069 1.24822 0.94746 0.98882 0.94303 0.86898 0.80646 0.83956 0.78589 1.20075 1.20847 1.18837 1.21240 0.88827 0.94833 1.51859 0.90628 1.19778 0.96113 0.76398 0.97631 1.45592 1.64952 1.15483 1.02637 1.20128 0.78753 0.87100 0.83632 1.90664 1.50170 1.67043 1.30308 1.22043 1.02513 0.94884 0.89699 1.61898 1.17448 1.25006 1.19650 1.23063 0.89353 1.03775 0.95817 1.22780 0.96997 0.85509 0.95653 1.88082 1.23677 1.33439 1.82612 1.21867 0.87040 0.94189 0.95307 0.88732 1.20164 0.82073 0.90194 0.76604 1.43746 1.12099 1.14858 1.71170 1.90776 1.64006 1.39718 1.44884 1.22649 1.00381 0.91324 0.95531 1.17745 0.92494 0.95812 0.88349 1.21340 0.95880 1.00831 0.97272 1.20920 0.98837 0.99316 0.94439 1.21119 0.92830 1.01061 0.99706 1.21110 0.96909 0.98879 0.96217 1.21694 1.00291 0.95846 0.94384 0.92466 0.93638 0.95521 0.91995 0.87952 0.86597 0.94065 0.87603 0.91581 0.76847 0.76338 0.93232 0.89227 0.86103 0.86150 0.86346 0.85919 0.84350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.96 55.43 0.77 -25.93 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 20.97 27.47 -169.99 -4.67 16.30 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.53 -14.47 9.49 -34.44 -0.33 -14.79 16 8 H 0.08 2.25 7.52 -52.49 -0.39 1.85 16 9 C 0.22 5.17 4.16 -5.19 -0.02 5.15 16 10 N -0.56 -10.98 2.49 -114.73 -0.29 -11.27 16 11 C 0.52 9.83 7.19 -10.98 -0.08 9.75 16 12 O -0.51 -11.47 14.01 5.55 0.08 -11.39 16 13 C 0.04 0.56 4.07 -4.97 -0.02 0.54 16 14 N -0.51 -7.03 4.47 -235.76 -1.05 -8.08 16 15 C 0.01 0.11 5.28 -3.71 -0.02 0.09 16 16 C 0.07 0.89 7.01 37.21 0.26 1.15 16 17 O -0.36 -5.14 10.01 -55.04 -0.55 -5.69 16 18 C 0.08 0.87 3.21 -27.83 -0.09 0.78 16 19 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 20 C 0.53 5.81 7.45 -10.98 -0.08 5.73 16 21 N -0.85 -5.03 8.84 31.22 0.28 -4.76 16 22 O -0.52 -8.27 17.35 -14.25 -0.25 -8.52 16 23 C 0.03 0.32 4.89 -3.71 -0.02 0.30 16 24 C 0.15 2.44 4.23 -83.70 -0.35 2.08 16 25 C -0.13 -1.75 8.64 -39.39 -0.34 -2.09 16 26 C -0.12 -1.28 10.04 -39.61 -0.40 -1.68 16 27 C -0.13 -1.44 10.04 -39.55 -0.40 -1.84 16 28 C -0.11 -1.48 10.04 -39.61 -0.40 -1.88 16 29 C -0.10 -1.69 9.77 -39.39 -0.38 -2.07 16 30 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.05 1.14 6.54 -51.93 -0.34 0.80 16 32 H 0.03 0.61 7.48 -51.93 -0.39 0.22 16 33 H 0.06 0.87 7.89 -51.93 -0.41 0.46 16 34 H 0.10 1.18 7.19 -51.93 -0.37 0.81 16 35 H 0.12 2.07 5.83 -51.93 -0.30 1.77 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.40 1.19 8.70 -40.82 -0.35 0.84 16 40 H 0.41 1.91 8.93 -40.82 -0.36 1.54 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.66 7.98 -51.93 -0.41 0.25 16 43 H 0.12 1.41 7.92 -52.48 -0.42 1.00 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 46 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 47 H 0.14 2.63 7.22 -52.49 -0.38 2.25 16 LS Contribution 386.74 15.07 5.83 5.83 Total: -1.00 -36.10 386.74 -9.30 -45.40 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -6.69 Total: 4.87 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -2.77 Total: 3.24 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.29 Total: -50.04 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.72 Total: -25.60 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.10 -9.30 -45.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051131230.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.189 kcal (2) G-P(sol) polarization free energy of solvation -36.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds