Wall clock time and date at job start Wed Apr 1 2020 04:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00021 * 2 1 4 4 H 1.48500 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47110 * 299.99741 * 3 2 1 6 6 H 1.48498 * 109.47515 * 59.99743 * 3 2 1 7 7 C 1.37870 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00114 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47250 * 180.02562 * 9 7 2 11 11 O 1.42895 * 109.47388 * 180.02562 * 10 9 7 12 12 C 1.35896 * 117.00333 * 179.97438 * 11 10 9 13 13 C 1.38807 * 120.01943 * 0.02562 * 12 11 10 14 14 C 1.38175 * 120.09507 * 179.97438 * 13 12 11 15 15 C 1.38149 * 120.12665 * 359.97438 * 14 13 12 16 16 C 1.38932 * 120.03813 * 0.02562 * 15 14 13 17 17 N 1.39670 * 120.04793 * 180.02562 * 16 15 14 18 18 C 1.46497 * 119.99772 * 359.97438 * 17 16 15 19 19 C 1.50708 * 109.47105 * 180.02562 * 18 17 16 20 20 O 1.21280 * 119.99535 * 359.97438 * 19 18 17 21 21 N 1.34771 * 119.99895 * 180.02562 * 19 18 17 22 22 C 1.47272 * 121.35081 * 180.02562 * 21 19 18 23 23 C 1.52987 * 108.18753 * 118.46893 * 22 21 19 24 24 N 1.45640 * 110.77349 * 46.72744 * 23 22 21 25 25 C 1.33383 * 124.59119 * 338.11809 * 24 23 22 26 26 O 1.21279 * 118.48762 * 184.29973 * 25 24 23 27 27 C 1.47049 * 121.35627 * 359.71014 * 21 19 18 28 28 C 1.38575 * 120.01802 * 179.97438 * 12 11 10 29 29 H 0.97004 * 119.99827 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46999 * 59.99660 * 9 7 2 31 31 H 1.09006 * 109.47040 * 299.99842 * 9 7 2 32 32 H 1.09000 * 109.47527 * 59.99824 * 10 9 7 33 33 H 1.09006 * 109.46840 * 299.99805 * 10 9 7 34 34 H 1.08001 * 119.95431 * 359.95965 * 13 12 11 35 35 H 1.08007 * 119.93201 * 180.02562 * 14 13 12 36 36 H 1.08000 * 119.98194 * 180.02562 * 15 14 13 37 37 H 0.96995 * 120.00266 * 179.97438 * 17 16 15 38 38 H 1.08993 * 109.47571 * 299.99875 * 18 17 16 39 39 H 1.09000 * 109.47515 * 60.00293 * 18 17 16 40 40 H 1.08997 * 109.71784 * 238.14229 * 22 21 19 41 41 H 1.09004 * 109.72038 * 358.79459 * 22 21 19 42 42 H 1.09000 * 109.21562 * 167.06097 * 23 22 21 43 43 H 1.08998 * 109.22047 * 286.38793 * 23 22 21 44 44 H 0.97008 * 117.70478 * 158.10049 * 24 23 22 45 45 H 1.09000 * 109.56727 * 342.58900 * 27 21 19 46 46 H 1.08994 * 109.56521 * 102.94500 * 27 21 19 47 47 H 1.08005 * 120.06349 * 359.74928 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0018 11 8 1.5307 -4.8996 0.0012 12 6 2.2708 -6.0393 0.0017 13 6 3.6570 -5.9672 0.0032 14 6 4.4111 -7.1250 0.0042 15 6 3.7882 -8.3581 0.0042 16 6 2.4011 -8.4366 0.0027 17 7 1.7712 -9.6832 0.0032 18 6 2.5732 -10.9091 0.0049 19 6 1.6592 -12.1074 0.0045 20 8 0.4563 -11.9525 0.0035 21 7 2.1785 -13.3510 0.0064 22 6 1.3132 -14.5427 0.0055 23 6 1.5957 -15.3371 -1.2711 24 7 3.0294 -15.4813 -1.4831 25 6 3.9571 -14.6809 -0.9560 26 8 5.1159 -14.8539 -1.2691 27 6 3.6321 -13.5733 0.0024 28 6 1.6421 -7.2742 0.0017 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5570 -0.8896 31 1 0.6239 -2.5567 0.8904 32 1 2.8712 -3.6040 0.8922 33 1 2.8725 -3.6047 -0.8878 34 1 4.1469 -5.0047 0.0034 35 1 5.4895 -7.0658 0.0059 36 1 4.3799 -9.2617 0.0054 37 1 0.8027 -9.7372 0.0025 38 1 3.2028 -10.9327 -0.8845 39 1 3.2014 -10.9312 0.8954 40 1 1.5337 -15.1579 0.8779 41 1 0.2669 -14.2376 0.0249 42 1 1.1444 -16.3256 -1.1858 43 1 1.1577 -14.8159 -2.1223 44 1 3.3307 -16.2107 -2.0471 45 1 4.1401 -12.6605 -0.3091 46 1 3.9613 -13.8530 1.0030 47 1 0.5636 -7.3322 0.0054 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098127983.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:47 Heat of formation + Delta-G solvation = -72.157022 kcal Electronic energy + Delta-G solvation = -28714.681587 eV Core-core repulsion = 24476.872749 eV Total energy + Delta-G solvation = -4237.808838 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.43472 -40.04255 -39.57713 -37.72959 -37.06026 -35.09678 -34.86596 -33.31890 -31.27457 -30.82069 -30.02056 -28.91901 -28.18472 -26.77547 -24.97140 -24.27121 -22.64317 -21.83304 -21.10390 -20.34090 -19.69524 -18.64454 -17.92176 -17.80151 -16.95669 -16.80922 -16.38291 -16.22629 -16.01544 -15.71761 -15.46701 -15.24681 -15.19996 -14.67411 -14.61836 -14.26087 -14.20723 -13.99399 -13.43608 -13.38664 -13.14791 -12.82758 -12.63937 -12.61270 -12.36177 -12.30087 -11.57361 -11.56919 -11.24098 -11.13057 -10.91878 -10.71610 -10.50519 -10.43166 -10.08686 -9.89990 -9.74207 -9.61743 -9.51429 -9.25089 -8.42892 -7.96009 -7.40891 -6.07740 -4.12110 1.68913 1.79486 1.82258 1.86208 1.90367 2.53846 3.13433 3.28544 3.35691 3.39504 3.63582 3.69667 3.95765 4.01247 4.09299 4.28624 4.31554 4.44611 4.53098 4.58605 4.73640 4.80198 4.92029 5.02685 5.05864 5.28794 5.29001 5.37103 5.52840 5.54243 5.76799 5.98922 6.09012 6.10096 6.10160 6.29805 6.40902 6.50895 6.60476 6.66194 6.72065 6.87593 7.27469 7.33666 7.41966 7.54334 7.63043 7.68157 7.85877 8.13072 8.27516 8.93848 9.52142 11.03881 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.030400 B = 0.001492 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.823936 B =18768.127043 C =19475.375760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.066 3.934 11 O -0.315 6.315 12 C 0.189 3.811 13 C -0.261 4.261 14 C -0.036 4.036 15 C -0.247 4.247 16 C 0.247 3.753 17 N -0.739 5.739 18 C 0.110 3.890 19 C 0.521 3.479 20 O -0.521 6.521 21 N -0.620 5.620 22 C 0.095 3.905 23 C 0.095 3.905 24 N -0.717 5.717 25 C 0.513 3.487 26 O -0.542 6.542 27 C 0.093 3.907 28 C -0.232 4.232 29 H 0.262 0.738 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.411 0.589 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.116 0.884 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.403 0.597 45 H 0.124 0.876 46 H 0.113 0.887 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.010 -35.511 -0.029 36.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.008 4.008 11 O -0.228 6.228 12 C 0.140 3.860 13 C -0.281 4.281 14 C -0.055 4.055 15 C -0.269 4.269 16 C 0.145 3.855 17 N -0.374 5.374 18 C -0.018 4.018 19 C 0.309 3.691 20 O -0.396 6.396 21 N -0.357 5.357 22 C -0.027 4.027 23 C -0.031 4.031 24 N -0.370 5.370 25 C 0.298 3.702 26 O -0.418 6.418 27 C -0.033 4.033 28 C -0.256 4.256 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.145 0.855 35 H 0.138 0.862 36 H 0.133 0.867 37 H 0.249 0.751 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.134 0.866 42 H 0.112 0.888 43 H 0.092 0.908 44 H 0.239 0.761 45 H 0.142 0.858 46 H 0.131 0.869 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.628 -35.279 -0.041 35.726 hybrid contribution 0.380 0.556 -0.226 0.710 sum 6.008 -34.723 -0.266 35.240 Atomic orbital electron populations 1.69990 1.06099 1.26807 1.49872 1.24991 0.94898 0.99377 0.94958 0.86434 0.79998 0.83285 0.77681 1.19631 1.20868 1.20871 1.21022 0.93112 0.90219 1.51998 0.92277 1.19139 0.94226 0.89085 0.98869 1.23324 0.97001 0.80690 0.99777 1.86155 1.36740 1.13287 1.86602 1.18813 0.89857 0.86834 0.90450 1.21179 0.92991 0.99710 1.14264 1.20614 0.99062 0.91390 0.94406 1.20365 0.92013 0.97969 1.16556 1.17265 0.91435 0.84019 0.92816 1.44194 1.08787 1.00794 1.83623 1.21019 0.93642 0.83457 1.03726 1.20657 0.89348 0.83881 0.75223 1.90738 1.15199 1.84944 1.48675 1.48113 1.06512 1.06005 1.75055 1.22013 0.97860 0.85574 0.97299 1.21802 0.80716 1.01807 0.98741 1.45389 1.06899 1.32961 1.51715 1.20105 0.85368 0.83190 0.81493 1.90853 1.19146 1.71389 1.60446 1.21929 0.81167 0.99472 1.00689 1.19661 0.99850 0.88752 1.17299 0.92799 0.95398 0.95403 0.93042 0.93058 0.85471 0.86204 0.86749 0.75122 0.89105 0.88891 0.89760 0.86580 0.88785 0.90794 0.76098 0.85779 0.86948 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.64 5.34 -27.88 -0.15 0.49 16 10 C 0.07 1.45 4.68 37.16 0.17 1.62 16 11 O -0.32 -6.67 10.13 -19.41 -0.20 -6.87 16 12 C 0.19 3.39 6.68 -39.25 -0.26 3.13 16 13 C -0.26 -4.17 9.04 -39.39 -0.36 -4.53 16 14 C -0.04 -0.47 10.03 -39.64 -0.40 -0.87 16 15 C -0.25 -2.95 9.31 -39.36 -0.37 -3.31 16 16 C 0.25 3.22 6.65 -83.81 -0.56 2.67 16 17 N -0.74 -7.82 5.70 -59.83 -0.34 -8.16 16 18 C 0.11 0.77 3.84 -5.19 -0.02 0.75 16 19 C 0.52 3.85 7.79 -10.98 -0.09 3.76 16 20 O -0.52 -5.62 15.15 5.56 0.08 -5.53 16 21 N -0.62 -2.88 2.99 -174.38 -0.52 -3.40 16 22 C 0.10 0.28 6.53 -3.63 -0.02 0.25 16 23 C 0.09 0.17 7.34 -4.51 -0.03 0.13 16 24 N -0.72 -2.60 5.42 -61.47 -0.33 -2.93 16 25 C 0.51 3.03 7.83 -11.93 -0.09 2.93 16 26 O -0.54 -5.45 17.80 5.56 0.10 -5.35 16 27 C 0.09 0.34 6.37 -5.22 -0.03 0.30 16 28 C -0.23 -3.68 9.83 -39.24 -0.39 -4.06 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 33 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 34 H 0.13 2.02 6.29 -52.49 -0.33 1.69 16 35 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 36 H 0.11 1.01 6.73 -52.49 -0.35 0.66 16 37 H 0.41 4.63 7.45 -40.82 -0.30 4.33 16 38 H 0.09 0.53 7.36 -51.93 -0.38 0.15 16 39 H 0.09 0.49 7.94 -51.93 -0.41 0.08 16 40 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 41 H 0.12 0.45 7.06 -51.93 -0.37 0.08 16 42 H 0.09 -0.06 8.14 -51.93 -0.42 -0.48 16 43 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 44 H 0.40 1.15 8.80 -40.82 -0.36 0.79 16 45 H 0.12 0.34 6.26 -51.93 -0.33 0.02 16 46 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16 LS Contribution 391.39 15.07 5.90 5.90 Total: -1.00 -36.20 391.39 -9.15 -45.35 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.55 Total: 0.75 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -3.00 Total: -10.22 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: -0.46 Total: -40.42 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.01 Total: -17.75 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.20 -9.15 -45.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098127983.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.805 kcal (2) G-P(sol) polarization free energy of solvation -36.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds