Wall clock time and date at job start Wed Apr 1 2020 04:13:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86803 * 120.00021 * 2 1
4 4 H 1.48500 * 109.47128 * 179.97438 * 3 2 1
5 5 H 1.48498 * 109.47110 * 299.99741 * 3 2 1
6 6 H 1.48498 * 109.47515 * 59.99743 * 3 2 1
7 7 C 1.37870 * 119.99920 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00411 * 180.02562 * 7 2 1
9 9 C 1.50703 * 120.00114 * 0.02562 * 7 2 1
10 10 C 1.52998 * 109.47250 * 180.02562 * 9 7 2
11 11 O 1.42895 * 109.47388 * 180.02562 * 10 9 7
12 12 C 1.35896 * 117.00333 * 179.97438 * 11 10 9
13 13 C 1.38807 * 120.01943 * 0.02562 * 12 11 10
14 14 C 1.38175 * 120.09507 * 179.97438 * 13 12 11
15 15 C 1.38149 * 120.12665 * 359.97438 * 14 13 12
16 16 C 1.38932 * 120.03813 * 0.02562 * 15 14 13
17 17 N 1.39670 * 120.04793 * 180.02562 * 16 15 14
18 18 C 1.46497 * 119.99772 * 359.97438 * 17 16 15
19 19 C 1.50708 * 109.47105 * 180.02562 * 18 17 16
20 20 O 1.21280 * 119.99535 * 359.97438 * 19 18 17
21 21 N 1.34771 * 119.99895 * 180.02562 * 19 18 17
22 22 C 1.47272 * 121.35081 * 180.02562 * 21 19 18
23 23 C 1.52987 * 108.18753 * 118.46893 * 22 21 19
24 24 N 1.45640 * 110.77349 * 46.72744 * 23 22 21
25 25 C 1.33383 * 124.59119 * 338.11809 * 24 23 22
26 26 O 1.21279 * 118.48762 * 184.29973 * 25 24 23
27 27 C 1.47049 * 121.35627 * 359.71014 * 21 19 18
28 28 C 1.38575 * 120.01802 * 179.97438 * 12 11 10
29 29 H 0.97004 * 119.99827 * 0.02562 * 1 2 3
30 30 H 1.09000 * 109.46999 * 59.99660 * 9 7 2
31 31 H 1.09006 * 109.47040 * 299.99842 * 9 7 2
32 32 H 1.09000 * 109.47527 * 59.99824 * 10 9 7
33 33 H 1.09006 * 109.46840 * 299.99805 * 10 9 7
34 34 H 1.08001 * 119.95431 * 359.95965 * 13 12 11
35 35 H 1.08007 * 119.93201 * 180.02562 * 14 13 12
36 36 H 1.08000 * 119.98194 * 180.02562 * 15 14 13
37 37 H 0.96995 * 120.00266 * 179.97438 * 17 16 15
38 38 H 1.08993 * 109.47571 * 299.99875 * 18 17 16
39 39 H 1.09000 * 109.47515 * 60.00293 * 18 17 16
40 40 H 1.08997 * 109.71784 * 238.14229 * 22 21 19
41 41 H 1.09004 * 109.72038 * 358.79459 * 22 21 19
42 42 H 1.09000 * 109.21562 * 167.06097 * 23 22 21
43 43 H 1.08998 * 109.22047 * 286.38793 * 23 22 21
44 44 H 0.97008 * 117.70478 * 158.10049 * 24 23 22
45 45 H 1.09000 * 109.56727 * 342.58900 * 27 21 19
46 46 H 1.08994 * 109.56521 * 102.94500 * 27 21 19
47 47 H 1.08005 * 120.06349 * 359.74928 * 28 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.7092 1.3464 0.0006
5 1 1.8905 2.3964 -1.2125
6 1 1.8904 2.3965 1.2124
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4991 0.0005
10 6 2.2452 -3.6620 0.0018
11 8 1.5307 -4.8996 0.0012
12 6 2.2708 -6.0393 0.0017
13 6 3.6570 -5.9672 0.0032
14 6 4.4111 -7.1250 0.0042
15 6 3.7882 -8.3581 0.0042
16 6 2.4011 -8.4366 0.0027
17 7 1.7712 -9.6832 0.0032
18 6 2.5732 -10.9091 0.0049
19 6 1.6592 -12.1074 0.0045
20 8 0.4563 -11.9525 0.0035
21 7 2.1785 -13.3510 0.0064
22 6 1.3132 -14.5427 0.0055
23 6 1.5957 -15.3371 -1.2711
24 7 3.0294 -15.4813 -1.4831
25 6 3.9571 -14.6809 -0.9560
26 8 5.1159 -14.8539 -1.2691
27 6 3.6321 -13.5733 0.0024
28 6 1.6421 -7.2742 0.0017
29 1 -0.4850 0.8401 -0.0004
30 1 0.6246 -2.5570 -0.8896
31 1 0.6239 -2.5567 0.8904
32 1 2.8712 -3.6040 0.8922
33 1 2.8725 -3.6047 -0.8878
34 1 4.1469 -5.0047 0.0034
35 1 5.4895 -7.0658 0.0059
36 1 4.3799 -9.2617 0.0054
37 1 0.8027 -9.7372 0.0025
38 1 3.2028 -10.9327 -0.8845
39 1 3.2014 -10.9312 0.8954
40 1 1.5337 -15.1579 0.8779
41 1 0.2669 -14.2376 0.0249
42 1 1.1444 -16.3256 -1.1858
43 1 1.1577 -14.8159 -2.1223
44 1 3.3307 -16.2107 -2.0471
45 1 4.1401 -12.6605 -0.3091
46 1 3.9613 -13.8530 1.0030
47 1 0.5636 -7.3322 0.0054
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000098127983.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:13:47
Heat of formation + Delta-G solvation = -72.157022 kcal
Electronic energy + Delta-G solvation = -28714.681587 eV
Core-core repulsion = 24476.872749 eV
Total energy + Delta-G solvation = -4237.808838 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.43472 -40.04255 -39.57713 -37.72959 -37.06026 -35.09678 -34.86596 -33.31890
-31.27457 -30.82069 -30.02056 -28.91901 -28.18472 -26.77547 -24.97140 -24.27121
-22.64317 -21.83304 -21.10390 -20.34090 -19.69524 -18.64454 -17.92176 -17.80151
-16.95669 -16.80922 -16.38291 -16.22629 -16.01544 -15.71761 -15.46701 -15.24681
-15.19996 -14.67411 -14.61836 -14.26087 -14.20723 -13.99399 -13.43608 -13.38664
-13.14791 -12.82758 -12.63937 -12.61270 -12.36177 -12.30087 -11.57361 -11.56919
-11.24098 -11.13057 -10.91878 -10.71610 -10.50519 -10.43166 -10.08686 -9.89990
-9.74207 -9.61743 -9.51429 -9.25089 -8.42892 -7.96009 -7.40891 -6.07740
-4.12110 1.68913 1.79486 1.82258 1.86208 1.90367 2.53846 3.13433
3.28544 3.35691 3.39504 3.63582 3.69667 3.95765 4.01247 4.09299
4.28624 4.31554 4.44611 4.53098 4.58605 4.73640 4.80198 4.92029
5.02685 5.05864 5.28794 5.29001 5.37103 5.52840 5.54243 5.76799
5.98922 6.09012 6.10096 6.10160 6.29805 6.40902 6.50895 6.60476
6.66194 6.72065 6.87593 7.27469 7.33666 7.41966 7.54334 7.63043
7.68157 7.85877 8.13072 8.27516 8.93848 9.52142 11.03881
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.030400 B = 0.001492 C = 0.001437
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 920.823936 B =18768.127043 C =19475.375760
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.889 5.889
2 C 0.060 3.940
3 Si 0.899 3.101
4 H -0.272 1.272
5 H -0.283 1.283
6 H -0.283 1.283
7 C -0.525 4.525
8 H 0.059 0.941
9 C 0.024 3.976
10 C 0.066 3.934
11 O -0.315 6.315
12 C 0.189 3.811
13 C -0.261 4.261
14 C -0.036 4.036
15 C -0.247 4.247
16 C 0.247 3.753
17 N -0.739 5.739
18 C 0.110 3.890
19 C 0.521 3.479
20 O -0.521 6.521
21 N -0.620 5.620
22 C 0.095 3.905
23 C 0.095 3.905
24 N -0.717 5.717
25 C 0.513 3.487
26 O -0.542 6.542
27 C 0.093 3.907
28 C -0.232 4.232
29 H 0.262 0.738
30 H 0.028 0.972
31 H 0.028 0.972
32 H 0.051 0.949
33 H 0.051 0.949
34 H 0.127 0.873
35 H 0.120 0.880
36 H 0.115 0.885
37 H 0.411 0.589
38 H 0.091 0.909
39 H 0.093 0.907
40 H 0.084 0.916
41 H 0.116 0.884
42 H 0.094 0.906
43 H 0.074 0.926
44 H 0.403 0.597
45 H 0.124 0.876
46 H 0.113 0.887
47 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.010 -35.511 -0.029 36.016
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.528 5.528
2 C -0.142 4.142
3 Si 0.726 3.274
4 H -0.196 1.196
5 H -0.209 1.209
6 H -0.209 1.209
7 C -0.564 4.564
8 H 0.077 0.923
9 C -0.013 4.013
10 C -0.008 4.008
11 O -0.228 6.228
12 C 0.140 3.860
13 C -0.281 4.281
14 C -0.055 4.055
15 C -0.269 4.269
16 C 0.145 3.855
17 N -0.374 5.374
18 C -0.018 4.018
19 C 0.309 3.691
20 O -0.396 6.396
21 N -0.357 5.357
22 C -0.027 4.027
23 C -0.031 4.031
24 N -0.370 5.370
25 C 0.298 3.702
26 O -0.418 6.418
27 C -0.033 4.033
28 C -0.256 4.256
29 H 0.072 0.928
30 H 0.046 0.954
31 H 0.046 0.954
32 H 0.070 0.930
33 H 0.069 0.931
34 H 0.145 0.855
35 H 0.138 0.862
36 H 0.133 0.867
37 H 0.249 0.751
38 H 0.109 0.891
39 H 0.111 0.889
40 H 0.102 0.898
41 H 0.134 0.866
42 H 0.112 0.888
43 H 0.092 0.908
44 H 0.239 0.761
45 H 0.142 0.858
46 H 0.131 0.869
47 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges 5.628 -35.279 -0.041 35.726
hybrid contribution 0.380 0.556 -0.226 0.710
sum 6.008 -34.723 -0.266 35.240
Atomic orbital electron populations
1.69990 1.06099 1.26807 1.49872 1.24991 0.94898 0.99377 0.94958
0.86434 0.79998 0.83285 0.77681 1.19631 1.20868 1.20871 1.21022
0.93112 0.90219 1.51998 0.92277 1.19139 0.94226 0.89085 0.98869
1.23324 0.97001 0.80690 0.99777 1.86155 1.36740 1.13287 1.86602
1.18813 0.89857 0.86834 0.90450 1.21179 0.92991 0.99710 1.14264
1.20614 0.99062 0.91390 0.94406 1.20365 0.92013 0.97969 1.16556
1.17265 0.91435 0.84019 0.92816 1.44194 1.08787 1.00794 1.83623
1.21019 0.93642 0.83457 1.03726 1.20657 0.89348 0.83881 0.75223
1.90738 1.15199 1.84944 1.48675 1.48113 1.06512 1.06005 1.75055
1.22013 0.97860 0.85574 0.97299 1.21802 0.80716 1.01807 0.98741
1.45389 1.06899 1.32961 1.51715 1.20105 0.85368 0.83190 0.81493
1.90853 1.19146 1.71389 1.60446 1.21929 0.81167 0.99472 1.00689
1.19661 0.99850 0.88752 1.17299 0.92799 0.95398 0.95403 0.93042
0.93058 0.85471 0.86204 0.86749 0.75122 0.89105 0.88891 0.89760
0.86580 0.88785 0.90794 0.76098 0.85779 0.86948 0.85547
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16
2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16
3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16
4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16
5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
7 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16
8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16
9 C 0.02 0.64 5.34 -27.88 -0.15 0.49 16
10 C 0.07 1.45 4.68 37.16 0.17 1.62 16
11 O -0.32 -6.67 10.13 -19.41 -0.20 -6.87 16
12 C 0.19 3.39 6.68 -39.25 -0.26 3.13 16
13 C -0.26 -4.17 9.04 -39.39 -0.36 -4.53 16
14 C -0.04 -0.47 10.03 -39.64 -0.40 -0.87 16
15 C -0.25 -2.95 9.31 -39.36 -0.37 -3.31 16
16 C 0.25 3.22 6.65 -83.81 -0.56 2.67 16
17 N -0.74 -7.82 5.70 -59.83 -0.34 -8.16 16
18 C 0.11 0.77 3.84 -5.19 -0.02 0.75 16
19 C 0.52 3.85 7.79 -10.98 -0.09 3.76 16
20 O -0.52 -5.62 15.15 5.56 0.08 -5.53 16
21 N -0.62 -2.88 2.99 -174.38 -0.52 -3.40 16
22 C 0.10 0.28 6.53 -3.63 -0.02 0.25 16
23 C 0.09 0.17 7.34 -4.51 -0.03 0.13 16
24 N -0.72 -2.60 5.42 -61.47 -0.33 -2.93 16
25 C 0.51 3.03 7.83 -11.93 -0.09 2.93 16
26 O -0.54 -5.45 17.80 5.56 0.10 -5.35 16
27 C 0.09 0.34 6.37 -5.22 -0.03 0.30 16
28 C -0.23 -3.68 9.83 -39.24 -0.39 -4.06 16
29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16
30 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16
31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16
32 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16
33 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16
34 H 0.13 2.02 6.29 -52.49 -0.33 1.69 16
35 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16
36 H 0.11 1.01 6.73 -52.49 -0.35 0.66 16
37 H 0.41 4.63 7.45 -40.82 -0.30 4.33 16
38 H 0.09 0.53 7.36 -51.93 -0.38 0.15 16
39 H 0.09 0.49 7.94 -51.93 -0.41 0.08 16
40 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16
41 H 0.12 0.45 7.06 -51.93 -0.37 0.08 16
42 H 0.09 -0.06 8.14 -51.93 -0.42 -0.48 16
43 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16
44 H 0.40 1.15 8.80 -40.82 -0.36 0.79 16
45 H 0.12 0.34 6.26 -51.93 -0.33 0.02 16
46 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16
47 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16
LS Contribution 391.39 15.07 5.90 5.90
Total: -1.00 -36.20 391.39 -9.15 -45.35
By element:
Atomic # 1 Polarization: 7.30 SS G_CDS: -6.55 Total: 0.75 kcal
Atomic # 6 Polarization: -7.22 SS G_CDS: -3.00 Total: -10.22 kcal
Atomic # 7 Polarization: -39.96 SS G_CDS: -0.46 Total: -40.42 kcal
Atomic # 8 Polarization: -17.74 SS G_CDS: -0.01 Total: -17.75 kcal
Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal
Total LS contribution 5.90 Total: 5.90 kcal
Total: -36.20 -9.15 -45.35 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000098127983.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.805 kcal
(2) G-P(sol) polarization free energy of solvation -36.205 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.010 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.352 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.157 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds